BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494031
Length=1202
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39580.1 | Symbols: | Peroxidase superfamily protein | chr5... 1616 0.0
> AT5G39580.1 | Symbols: | Peroxidase superfamily protein | chr5:15847081-15849108
REVERSE LENGTH=1241
Length=1241
Score = 1616 bits (875), Expect = 0.0
Identities = 1005/1068 (94%), Gaps = 7/1068 (1%)
Strand=Plus/Plus
Query 1 ATGCATCTAAAACAAACTCTATCTACTTACTCAAAACACACTTGCGATCTTATCTAAAAC 60
||||||||||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 1 ATGCATCTAAAACAAACTCTATCTACTAACTCGAAACACACTTGCGGTCTTATCTAAAAC 60
Query 61 ACAAACCAACAAAAGGAAAAAATGGGTTTGGTCCGATTCTTTTG-TTCGTTCCTAGTCTT 119
|||||||||||||| ||||||||||| ||||||||| || |||| || | || |||||||
Sbjct 61 ACAAACCAACAAAAAGAAAAAATGGGCTTGGTCCGA-TCATTTGCTTTGGTCATAGTCTT 119
Query 120 CCTTAGTTGTCTCATCGCGGTTTATGGTCAAGGTACAAGGATCGGGTTCTACTCGACCAC 179
|||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| ||
Sbjct 120 CCTTAGTTGTCTCATCGCCGTTTATGGCCAAGGTACGAGGATCGGGTTCTACTCGACTAC 179
Query 180 ATGCCCCAATGCCGAGACGATTGTTCAGACCACTGTGGCATCTCACTTTGGTTCAGATCC 239
||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 180 GTGCCCTAATGCCGAGACAATTGTTCGGACCACTGTGGCATCTCACTTTGGTTCAGATCC 239
Query 240 AAAGGTTGCACCGGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGA 299
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 AAAGGTTGCACCCGGGTTACTGAGAATGCACAACCATGATTGCTTTGTCCAAGGTTGTGA 299
Query 300 TGGTTCAGTGCTTTTATCAGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCT 359
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 300 TGGTTCGGTGCTTTTATCGGGACCTAACTCTGAAAGAACCGCTGGCGCAAACGTTAACCT 359
Query 360 TCGTGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCGGCATGTCCTGGTGT 419
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 CCATGGTTTTGAGGTCATTGACGATGCCAAGAGGCAGCTCGAGGCAGCATGTCCTGGTGT 419
Query 420 TGTCTCTTGTGCTGATATCTTAGCCTTGGCGGCTCGTGATTCCGTTGCTCTCACGAACGG 479
||||||||||||||||||||| ||||| |||||||||||||| ||| ||||||| |||||
Sbjct 420 TGTCTCTTGTGCTGATATCTTGGCCTTAGCGGCTCGTGATTCGGTTTCTCTCACAAACGG 479
Query 480 ACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGACGAGTGTCCTTGGCATCGAACGT 539
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct 480 ACAAAGTTGGCAAGTTCCAACAGGACGTAGAGATGGAAGAGTTTCCTTGGCATCGAACGT 539
Query 540 TAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCGGCGCTTT 599
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 540 TAACAATCTTCCTTCTCCAAGTGACTCTCTAGCCATTCAACAAAGGAAATTCTCCGCTTT 599
Query 600 TCGCCTCAACACTCGCGATCTCGTCGCTCTTGTT---GGAGGACACACGATCGGAACAGC 656
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 600 TCGCCTCAACACTCGCGATCTCGTCACTCTTGTTGGAGGAGGACACACGATCGGAACAGC 659
Query 657 TGCATGTGGATTTATCACGAACAGGATATTCAACTCGACCGGAAACACAGCCGATCCAAC 716
||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct 660 TGCATGTGGGTTTATCACGAACAGGATATTCAACTCGAGCGGAAACACAGCAGATCCAAC 719
Query 717 AATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATC 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 AATGGACCAAACATTTGTACCACAACTTCAAAGACTTTGTCCCCAAAACGGCGACGGATC 779
Query 777 AGCGCGT-TTGGATCTTGATACGGGAAGTGGAAACACTTTTGACACATCTTATTTCAACA 835
||| ||| ||| ||||||| || |||||||||||||||||||||||||||||||||| ||
Sbjct 780 AGCACGTGTTG-ATCTTGACACCGGAAGTGGAAACACTTTTGACACATCTTATTTCATCA 838
Query 836 ATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCTACCA 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 839 ATCTCAGCCGTAACAGAGGAATTCTTCAATCCGATCACGTTCTTTGGACTAGTCCGGCCA 898
Query 896 CGAGACCCATAGTGCAAGAGTTCATGACTTCTACAAGCAACTTTAATGTCCAGTTCGCAA 955
| ||| |||||||||||||||| ||| | ||| | ||||||| ||||||||||||||||
Sbjct 899 CAAGATCCATAGTGCAAGAGTTTATGGCACCTAGAGGCAACTTCAATGTCCAGTTCGCAA 958
Query 956 GTTCAATGGTTAAGATGAGTAATATTGGTGTGAAGACTGGGACAAATGGAGAAATTCGTA 1015
| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 959 GGTCAATGGTTAAAATGAGTAATATTGGTGTGAAGACGGGGACAAATGGAGAAATTCGTA 1018
Query 1016 GGGTTTGCTCTGCTGTTAATTAATCAGTGATTAAGGTTTTATGGCTAA 1063
||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 1019 GGGTTTGCTCTGCGGTTAATTAATCAGTGATTAAGTTTTTATGGCTAA 1066
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59035840920
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5