BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494036
Length=1026
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39510.1 | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1... 1434 0.0
AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-sna... 521 4e-147
AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)... 158 1e-37
> AT5G39510.1 | Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A,
ZIG1 | Vesicle transport v-SNARE family protein | chr5:15821442-15823840
FORWARD LENGTH=1058
Length=1058
Score = 1434 bits (776), Expect = 0.0
Identities = 955/1039 (92%), Gaps = 21/1039 (2%)
Strand=Plus/Plus
Query 1 ATCAAATCAATTCATCGTCGTCTTCCACAACTT-TCTTCACCGATCGATTTACCTTCTCC 59
|||||||||||||||||||||||||||||| || || |||||||||||||| || ||||
Sbjct 26 ATCAAATCAATTCATCGTCGTCTTCCACAA-TTGTCATCACCGATCGATTTTCCGACTCC 84
Query 60 GACGTACCT-CTCCTTCCCCGTT-CGTTTATCAG-GTCTTAACCTACCTCAT-GTTTGAA 115
||||||||| || |||||||||| | || |||| || || | || || | |||| |
Sbjct 85 GACGTACCTCCT-CTTCCCCGTTAC-CTTCTCAGAGTTTTTA-GTA-GTCTTCCTTTGGA 140
Query 116 ACAATGAGTGAAGCATTTGATGGATATGAGCGGCAATACTGTGAGCTCTCTGCGAGTCTT 175
||||||||||| | ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 141 ACAATGAGTGACGTGTTTGATGGATATGAGCGACAATACTGTGAGCTCTCGGCGAGTCTT 200
Query 176 TCAAAGAAGTGTTCCTCTGCTGTTGCGCTTGATGGAGAACAAAAGAAGCAGAAGTTGTCT 235
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 201 TCAAAGAAGTGTTCCTCTGCTATTTCGCTTGATGGAGAACAAAAGAAGCAGAAGTTGTCT 260
Query 236 GAAATCAAATCTGGCCTGGATAATGCAGAAGTATTGATTAGGAAAATGGATCTTGAGGCA 295
||||| ||||| || ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 261 GAAATAAAATCCGGGCTGGAAAATGCAGAAGTATTGATTAGGAAAATGGATCTCGAGGCA 320
Query 296 AGGAGCCTTCCACCAAATCTTAAGTCCAGTCTCCTTATCAAATTAAGAGAATTCAAGTCT 355
|||| ||||||||| |||||||||||||| |||||| |||||||||||||||||||||||
Sbjct 321 AGGACCCTTCCACCTAATCTTAAGTCCAGCCTCCTTGTCAAATTAAGAGAATTCAAGTCT 380
Query 356 GATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCACATCTGGACAGTTGAACGCTGCT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCACATCTGGACAGTTGAACGCTGCT 440
Query 416 GCTCGAGATGAGTTGCTAGAAGCTGGTATGGCTGACACAAAGACGGCTTCAGCTGATCAA 475
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 441 GCTCGTGATGAGTTGCTAGAAGCTGGTATGGCTGACACAAAGACGGCTTCAGCTGATCAG 500
Query 476 AGATCAAGATTGATGATGTCAACTGAGCGTCTCGGCCGAACCACTGACAGAGTCAAGGAC 535
||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 501 AGAGCAAGATTGATGATGTCAACTGAGCGTCTGGGCCGAACCACTGACAGAGTCAAGGAC 560
Query 536 AGCCGTAGAACAATGATGGAGACTGAAGAGATCGGTGTTTCAATCCTCCAAGACTTGCAC 595
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 561 AGTCGTAGAACAATGATGGAGACTGAAGAAATCGGTGTTTCAATCCTCCAAGACTTGCAC 620
Query 596 AGTCAGAGACAGTCTCTCCTACGCGCCCACGAAACG-TTGCATGGAGTAGACGATAACGT 654
||||||||||||||||| |||| |||||||||||| || |||||||||||||||||| |
Sbjct 621 GGTCAGAGACAGTCTCTCTTACGTGCCCACGAAACGCTT-CATGGAGTAGACGATAACAT 679
Query 655 TGGAAAAAGCAAGAAGATATTGACAGGCATGACGAGGAGGATGAACAAGAACAAATGGAC 714
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 680 TGGAAAGAGCAAGAAGATCTTGACAGACATGACGAGGAGGATGAACAAGAACAAATGGAC 739
Query 715 AATTGGAGCTATTATCA-CTGCTTTGATTGCCGCTATTATCGTCATCTTGTACTTCAAAC 773
|||||||| || |||| | || ||||||||||| ||| || ||||||||||||||||||
Sbjct 740 CATTGGAGCCATCATCATC-GCATTGATTGCCGCCATTTTCATCATCTTGTACTTCAAAC 798
Query 774 TCACCAAGTAAGCCTCTGTAACTAAGTCCGACCAAATCAAAGAACT--G-TTGTGTTCGT 830
||||||||||||||||||||||||| ||||||||||||||||||| | |||| |||||
Sbjct 799 TCACCAAGTAAGCCTCTGTAACTAAATCCGACCAAATCAAAGAACAACGGTTGTTTTCGT 858
Query 831 TT-GTGAATCTTTGATTTATCTTCTTTCTTCTTTCTGTGTGAAAATTTGTGTTTGCCACC 889
|| |||| ||||||||||||| | |||||||||| |||||||||| |||| |||||||||
Sbjct 859 TTTGTGAGTCTTTGATTTATCCTGTTTCTTCTTTTTGTGTGAAAAGTTGT-TTTGCCACC 917
Query 890 TTTGTATTCTAAATTTGACTATACATACATTAAGCAAGTAAAGCTTCGGCCT--GTGTCA 947
||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||
Sbjct 918 TTTGTATTCTAAATTTGACCATACATACTTTAAGCAAGTAAAGCTTCGGCCTAAGTGTCA 977
Query 948 CGTATATTGTGTATATTGTTCATATCGAATTCAGAACGATACATGGTTAAACATTGAGAT 1007
|||||||||| ||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 978 CGTATATTGTTTATATTGTTCATATCAAATCCAGAACTATACATGGTTAAACATTGAGAT 1037
Query 1008 TAAAAGCCTCAATTATTTC 1026
|||||||||||||||||||
Sbjct 1038 TAAAAGCCTCAATTATTTC 1056
> AT3G29100.1 | Symbols: VTI13, ATVTI13 | vesicle transport V-snare
13 | chr3:11075836-11077540 REVERSE LENGTH=1351
Length=1351
Score = 521 bits (282), Expect = 4e-147
Identities = 445/523 (85%), Gaps = 13/523 (2%)
Strand=Plus/Plus
Query 273 TTAGGAAAATGGATCTTGAGGCAAGGAGCCTTCCACCAAATCTTAAGTCCAGTCTCCTTA 332
||| ||||||||| || |||||||| | ||||||||| ||| |||| ||||||||||||
Sbjct 760 TTAAGAAAATGGACCTCGAGGCAAGAAACCTTCCACCCAATGTTAAATCCAGTCTCCTTG 819
Query 333 TCAAATTAAGAGAATTCAAGTCTGATCTGAACAATTTCAAAACTGAAGTGAAGAGAATCA 392
|||||||||| |||| ||| |||||||| ||||||||||| || ||||||||||||||||
Sbjct 820 TCAAATTAAGGGAATACAAATCTGATCTTAACAATTTCAAGACGGAAGTGAAGAGAATCA 879
Query 393 CATCTGGACAGTTGAACGCTGCTGCTCGAGATGAGTTGCTAGAAGCTGGTATGGCTGACA 452
|||||||| | || |||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 880 CATCTGGAAACTTAAACGCTACTGCTCGAGATGAGTTACTAGAAGCTGGTATGGCTGACA 939
Query 453 CAAAGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACTGAGCGTCTCGGCC 512
|| |||||||||||||||||||||||||||||||||||||||||| || | | | ||||
Sbjct 940 CATTGACGGCTTCAGCTGATCAAAGATCAAGATTGATGATGTCAACAGACCATTTAGGCC 999
Query 513 GAACCACTGACAGAGTCAAGGACAGCCGTAGAACAATGA-TGGAGACTGAAGAGATCGGT 571
||||||| |||||| |||||||||| | ||||| || | ||||||| |||||| | |||
Sbjct 1000 GAACCACAGACAGAATCAAGGACAGTAGGAGAACGAT-ACTGGAGACAGAAGAGCTTGGT 1058
Query 572 GTTTCAATCCTCCAAGACTTGCACAGTCAGAGACAGTCTCTCCTACGCGCCCACGAAACG 631
||||||||||| || || |||||| | ||||||||||||||| |||| ||||| ||||||
Sbjct 1059 GTTTCAATCCTTCAGGATTTGCACGGGCAGAGACAGTCTCTCTTACGGGCCCATGAAACG 1118
Query 632 -TTGCATGGAGTAGACGATAACGTTGGAAAAAGCAAGAAGATATTGACAGGCA-TGACGA 689
|| |||||||| || |||||||| ||||| |||||||| ||||||||| || |||| |
Sbjct 1119 CTT-CATGGAGTCGATGATAACGTCGGAAAGAGCAAGAAAATATTGACAA-CAATGACTA 1176
Query 690 GGAGGATGAACAAGAA-CAAATGGACAATTGGAGCTATTATCACTG-CTTTGATTGC-CG 746
|||| ||||| | ||| ||||||||| || || || || ||||| | | ||| | | ||
Sbjct 1177 GGAGAATGAATA-GAAACAAATGGACCATCGGTGCGATAATCACAGTCCTTG-TC-CTCG 1233
Query 747 CTATTATCGTCATCTTGTACTTCAAACTCACCAAGT-AAGCCT 788
| |||||| | |||||||||||||||||||||| || ||||||
Sbjct 1234 CCATTATCTTTATCTTGTACTTCAAACTCACCAGGTGAAGCCT 1276
> AT5G39520.1 | Symbols: | Protein of unknown function (DUF1997)
| chr5:15823735-15825492 REVERSE LENGTH=954
Length=954
Score = 158 bits (85), Expect = 1e-37
Identities = 98/104 (94%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 925 AAGTAAAGCTTCGGCCT--GTGTCACGTATATTGTGTATATTGTTCATATCGAATTCAGA 982
||||||||||||||||| |||||||||||||||| ||||||||||||||| ||| ||||
Sbjct 954 AAGTAAAGCTTCGGCCTAAGTGTCACGTATATTGTTTATATTGTTCATATCAAATCCAGA 895
Query 983 ACGATACATGGTTAAACATTGAGATTAAAAGCCTCAATTATTTC 1026
|| |||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ACTATACATGGTTAAACATTGAGATTAAAAGCCTCAATTATTTC 851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50284381147
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5