BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494041
Length=1969
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39450.1 | Symbols: | F-box family protein | chr5:15785717-... 2848 0.0
AT5G39460.1 | Symbols: | F-box family protein | chr5:15788289-... 776 0.0
AT5G39480.1 | Symbols: | F-box family protein | chr5:15801635-... 632 3e-180
AT5G39490.1 | Symbols: | F-box family protein | chr5:15805808-... 590 2e-167
> AT5G39450.1 | Symbols: | F-box family protein | chr5:15785717-15787946
FORWARD LENGTH=2137
Length=2137
Score = 2848 bits (1542), Expect = 0.0
Identities = 1851/1997 (93%), Gaps = 33/1997 (2%)
Strand=Plus/Plus
Query 1 TCTCTCTCACATCGTCTTCTTAGTTAGTGATTTCCTCATTTTTCTTCCACAATTTAATTC 60
|||||||| |||||||||||||||||| |||||||||||||||||| ||||| | ||||
Sbjct 143 TCTCTCTCGCATCGTCTTCTTAGTTAGCGATTTCCTCATTTTTCTTATACAATCTGATTC 202
Query 61 GGATCGAGTTCTACTTTGATGGGTAATTGAAAAGTTTGATTCTTGTTCACGT-TAAAGCG 119
|||||||||||| |||||||||||||||||||||||||| ||||||| |||| ||||||
Sbjct 203 GGATCGAGTTCTTCTTTGATGGGTAATTGAAAAGTTTGAATCTTGTTTACGTAAAAAGCG 262
Query 120 ATCTGATTCAAA-C----C------------C----CCCAAAGCTGCG-TTTTTGATCTT 157
|||||||||||| | | | |||||||||||| |||||||||||
Sbjct 263 ATCTGATTCAAACCAAAACTGATATTTTTGACGAATCCCAAAGCTGCGTTTTTTGATCTT 322
Query 158 CATAGTATGAATCAGATGAGGAAGAACGACGATTTAGGTTCGGAATCATTTGGTGCTTGC 217
|| |||||||||||||||| | ||||| ||||||||| || |||||||||||| |||||
Sbjct 323 CAAAGTATGAATCAGATGA-G--GAACGGCGATTTAGGGTCAGAATCATTTGGTACTTGC 379
Query 218 TTGCTTCTGTCTCTTCCAGAAGATGTAATTGCTGTTATAGCTCGTTTTGTATCTCCAAGA 277
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 380 TTGCTTCTGTCTCTTCCAGAAGATGTTATTGCTGTTATAGCACGTTTTGTATCTCCAAGA 439
Query 278 GACATTTGCAATCTAAGCTTATGCTGCAAAAGTCTCTGTGAGGTTTTTGATTCAGAAAGG 337
|||||||||||||| |||||||||||||||||||| ||||| ||| | ||||||||||||
Sbjct 440 GACATTTGCAATCTGAGCTTATGCTGCAAAAGTCTATGTGACGTTGTGGATTCAGAAAGG 499
Query 338 ATCTGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTTTCTTTATCTGAAATGATCCAATGG 397
|||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 500 ATCTGGCTTGTGCAGTGTGAAGTAGTAAAGGTTCTTCCTTTATCTGAAATAATCCAATGG 559
Query 398 CGAATCGGAATCTCTTCTTATAAGGCGTTTTGTCGGTTTCTTGGAGAGGTAATGAAGCCT 457
||||| || || ||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 560 CGAATTGGGATTTCTTCTTATAAGGCGCTTTGTTGGTTTCTTGGAGAGGTAATGAAGCCT 619
Query 458 CTTGTTGGGGTTTGGGTTCACCAAAACCCTGAACTTGGGAATGTTGTTTATGTAATGCCT 517
|||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 620 CTTGTTGGTGTTTGGGTTCATCAAAACCCTGAACTTGGGAATGTTGTTTATGTCATGCCT 679
Query 518 GGTTTTTTATCCGTTGTTGGGTGTCGGATAATTCCACAAGAGGTTGGTCCTTTAGGGATT 577
||||| || || ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 680 GGTTTCTTGTCTGTTGTTGGGTGTCGGATAATTCCACAAGAGGTTGGTCCTTTGGGGATT 739
Query 578 GAGGAGGCTCGAGTTATGTGGTCACCTGTGTTTGAGATAATCTGCGGTTTTGATGGCTCT 637
|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 740 GAGGAGGCTCGAGTTATGTGGTCACCTGTGTTTGAGATTATCTGTGGTTTTGATGGCTCC 799
Query 638 GCCAAGTTTTTCCTCCATGGAAGAGACGGAAAACTGCATTGCTGCCTGCATCCTGGTTTT 697
|||||||||||||||||||| ||||| |||||| |||| ||||| ||||| ||||||||
Sbjct 800 GCCAAGTTTTTCCTCCATGGGAGAGATGGAAAAGTGCAATGCTGTCTGCACCCTGGTTTC 859
Query 698 GTTATGGGCATTGAGAAGAGTTGTAATGTGCTTTTACTCGAGGTTGAGACGAGGCGAGAG 757
|||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 860 GTTAGGGGCATTGAGAAGAGTTGTAATGTGCTTCTACTTGAGGTTGAGACGAGGCGAGAG 919
Query 758 AAGGAGTTGTGCAGTGAGA-T--TGAGACTGTGTTGTTGGGAGAGACAGGGGTTCAGTTA 814
||| ||||||||| ||||| | ||||||||||||||||| |||||| ||||||||||||
Sbjct 920 AAGAAGTTGTGCAATGAGATTGATGAGACTGTGTTGTTGGTAGAGACGGGGGTTCAGTTA 979
Query 815 CCATTTCGCAAACTACCCTTTAGTTATAGAAGGAATTTACTTCACATAGTGACAAGCACT 874
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CCATTTCGCAAACTACCATTTAGTTATAGAAGGAATTTACTTCACATAGTGACAAGCACT 1039
Query 875 GTTGGTATACCTGTACCTGATCTATCAAGTGAAAGGTTATTTCCCACTTCGAAAGATGAT 934
|||||||||||||||||||||||||||||||||| ||||||||| || || |||||||||
Sbjct 1040 GTTGGTATACCTGTACCTGATCTATCAAGTGAAAAGTTATTTCCTACGTCAAAAGATGAT 1099
Query 935 GAAGCGGTGTTGTCT-GAACGCAGAACCATGCTCCTTAAAATGCATAAGTTTGGTGTTGA 993
||||||||||||| | ||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 1100 GAAGCGGTGTTGT-TGGAACGCAGAACCATGCTTCTTAAAATGCACAAGTTTGGTGGTGA 1158
Query 994 TTGGAATCACATGAACCTGGAGGATGAGTGTATAAATATTCCAAATCAGGTAGACATAAA 1053
|||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 1159 TTGGAATCACATGAACCTGGAGGATGAGTGCACAAATATTCCAAATCAGGTAGACATAAA 1218
Query 1054 CGAATCGTGGAAGCATCTTGGATTTGAAGTCGATAATCGGAACATGGACGCTGGGAATCA 1113
| |||||||||||||||| || ||||||| ||||| ||| ||||||||||||| ||||||
Sbjct 1219 CAAATCGTGGAAGCATCTAGGTTTTGAAGGCGATATTCGCAACATGGACGCTGAGAATCA 1278
Query 1114 GACACAAAGGAAGAGCTTTAGTAGGTATTTCAGAAGTGGCATAAAGCATATTCTTGGGAG 1173
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1279 GACACAAAGGAAGAGCTTTAGTAGGTATTTCAGAAGTGGCATAAAGCATATTCTCGGGAG 1338
Query 1174 GTCTAGTTCTTTAAAGAACACGTCTTCTTCAAGAAGTGAGACTAGACCTTGGAATCTCCA 1233
||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1339 GTCTAGTTCTTCAAAGAACATGTCTTCTTCAAGAAGTGAGACTAGACCTTTGAATCTCCA 1398
Query 1234 AAAATTTCTTAATTTTGGTGATTCCATAGGTCTTAGTCTCAAAGCTTCCAAGATTAAGCT 1293
||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 1399 AAAGTTTCTTAATTTTGGTGATTCAATAGGTCTTAGTCTCAAAGCTTCCAATATTAAGTT 1458
Query 1294 GTCTTCTTATCAAGGTTGGCCAAACATGGACGAAACCCGTTATGCCCTTTATAAGCTACC 1353
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1459 GTCTTCTTACCAAGGTTGGCCAAACATGGACGAAACCCGTTATGCCCTTTATAAGCTACC 1518
Query 1354 GATTAAGAATCCCATCGCTAACGAAGAGTATGCCGGCTTGTGGGGAGGAACTTTTGGCTG 1413
||||||| |||||||||||||||| ||||||||||| || ||||||||||||||||||||
Sbjct 1519 GATTAAGGATCCCATCGCTAACGATGAGTATGCCGGGTTATGGGGAGGAACTTTTGGCTG 1578
Query 1414 GCCACCAGGAAAATGTACAGAAGATAAACCCGGGAAGGCTCtttttt-tACTGATGCTCT 1472
|||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 1579 GCCACCAGGAAAATGTACAGAAGATAAACCAGGGAAGGCT-TTTTTTCTACTGATGCTCT 1637
Query 1473 CTTATGAAGAATCTCAAGATGGTACTGAAAGACTTCTTATAGGGACGAAAATACTCGAAG 1532
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 1638 CTTATGAAGAATCTCAAGATGGTACTGAGAGACTTCTTATAGGGACAAAAATACTCGAAG 1697
Query 1533 GAACTCACTACGGGATGCATCCTAATGGATCTGCAATGTTTGTTATAAAGATTGATTCAC 1592
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1698 GAACTCACTACGGGATGCATCCTAATGGATCTGCAATGTTTGTTATAAAAATTGATTCGC 1757
Query 1593 CTTCCTTTGAGCTTTTTCCTTTCGATACAAATGGAGAAGATTTTGAGCATTCTTACGCAG 1652
| ||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1758 CATCCTTTGAGGGTTTTCCTTTCGACACAAATGGAGAAGATTTTGAGCATTCTTACGCAG 1817
Query 1653 GAGAAGGTACTGCAAAGGGTTATGGTTTCCGGTATCCTGGTTACAAACCGGGTACACTTT 1712
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1818 GAGAAGGTACTGCAAAGGGTTATGGTTTCCGGTATCCTGGTTACAAACCTGGTACACTTT 1877
Query 1713 TCGTAACATCTAAAGGTCTTCTCATGTTTGTTTGGAAAGCAACTAAAGTTGTGTTGACAT 1772
|||| ||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct 1878 TCGTGACATCTAAAGGTCTTCTCATGTTCATTTGGAAAGCAACTAAAGCTGTGTTGACAT 1937
Query 1773 TACAAAGACTTGACCTTGGAGAGCTCTTAAGGAAAGGCGTGTGTGTATCGCCTTTACCTC 1832
| ||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1938 TGCAAAGACTTAACCTTGGAGAGCTCTTAAGGAAAGGTGTATGTGTATCGCCTTTACCTC 1997
Query 1833 CATGTTTGAATTTTGCTTATTTGACAAAATCTCACACCAATGTGTTTGCCCCTGAACGAA 1892
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1998 CATGTTTGAATTTTGCTTATTTGATAAAATGTCACACCAATGTGTTTGCCCCTGAACGAA 2057
Query 1893 GAAGATCGTAGGAGATTCCTGCAACAGATTCGAAGCTCACAAGTCCTCTCTGTTTCCAAT 1952
||||||| ||||||||| |||||||| ||| ||| |||||||||| ||||| ||||||||
Sbjct 2058 GAAGATCATAGGAGATTGCTGCAACAAATTTGAAACTCACAAGTCTTCTCTATTTCCAAT 2117
Query 1953 ATAATAATCTCATTATC 1969
|||||| |||||||||
Sbjct 2118 ATAATAGGCTCATTATC 2134
> AT5G39460.1 | Symbols: | F-box family protein | chr5:15788289-15790004
REVERSE LENGTH=1716
Length=1716
Score = 776 bits (420), Expect = 0.0
Identities = 1278/1670 (77%), Gaps = 147/1670 (9%)
Strand=Plus/Plus
Query 199 GGAATCATTTGGTGCTTGCTTGCTTCTGT-CTCTTCCAGAAGATGTAATTGCTGTTATAG 257
|||||| ||||| |||||||||||||| | | ||||| |||||||| ||||||||||
Sbjct 12 GGAATCGTTTGGAGCTTGCTTGCTTCT-TACGCTTCCCGAAGATGTGTTTGCTGTTATCT 70
Query 258 CTCGTTTTGTATCTCCAAGAGACATTTGCAATCTAAGCTTATGCTGCAAAAGTCTCTGTG 317
|||||||| | |||||||| |||||||||||||||| ||| ||| |||||||||| ||||
Sbjct 71 CTCGTTTTCTTTCTCCAAGCGACATTTGCAATCTAATCTTGTGCGGCAAAAGTCTTTGTG 130
Query 318 AGGTTTTTGATTCAGA-AAGGATC-TGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTTTC 375
|| | ||||| || || || | ||||||||||||||||||| |||||| |||||| |
Sbjct 131 CCCTTGTCGATTCCGAGAA-GA-CGTGGCTTGTGCAATGTGAAGAAGTAAAAGTTCTTCC 188
Query 376 TTT-ATCTGAAATGA-TCCAATGGCGAATCGGAATCTCTTCTTATAAGGCGTTTTGTCGG 433
||| || |||| | | |||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 189 TTTGAT-TGAACT-AGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGTAGG 246
Query 434 TTTCTTG-GAGAGGTAATGAAGCCTCTTGTTGGGGTTTGGGTTCACCAAAACCCTGAACT 492
||||||| | ||||| ||||||| ||| ||||| ||||||| || |||||||||||||
Sbjct 247 TTTCTTGTG-GAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAAGAAAACCCTGAACT 305
Query 493 TGGGAATGTTGTTTATGTAATGCCTGGTTTTTTATCCGTTGTTGGGTGTCGGATAATTCC 552
|||||||||||||||||| ||||||||||| || || ||||||||||| |||||||||||
Sbjct 306 TGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATTCC 365
Query 553 ACAAGAGGTTGGTCCTTTAG-GGATTGAGGAGG-CTCGAGTTATGTGGTCACCTGTGTTT 610
|||| |||||| |||||| | ||||| | |||| | | ||| | ||||||||| ||||||
Sbjct 366 ACAAAAGGTTGCTCCTTT-GTGGATTCAAGAGGGC-CAAGTCAAGTGGTCACCGGTGTTT 423
Query 611 GAGATAATCTGCGGTTTTGATGGCTCTGCCAAG--TTTTT-CCTCCATGGAAGAGACGGA 667
|||||||| ||||| |||||||||||| ||| ||||| |||||||||||||||| |
Sbjct 424 GAGATAATTTGCGGCTTTGATGGCTCT---AAGGGTTTTTTCCTCCATGGAAGAGACA-A 479
Query 668 A-AACTGCA-TTGCTGCCTGCATCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGTAATG 725
| || | | || || | | |||||||| ||||||| ||| ||||||||||| ||||
Sbjct 480 ACAAG-GTAGTTTCTTA-TAC--CCTGGTTTCGTTATGGACATCGAGAAGAGTTGCAATG 535
Query 726 TGCTTTTACTCGAGGTTGAGACGAGG-CGAGAGAAGGAGTT-GTGCAGTGAGATTGAGAC 783
||||| ||||||| |||||| ||||| | ||||||| |||| ||||| |||||||||||
Sbjct 536 TGCTTCTACTCGAAGTTGAGCCGAGGTC-AGAGAAG-AGTTCGTGCAATGAGATTGAGA- 592
Query 784 TGTGTTGTTGGGAGAGACAGGGGTTCAGTTACCATTTCGCAAA-CTACCCTTTAGTTATA 842
| | | || ||||| | | |||||| | | | ||| ||| ||| |||
Sbjct 593 -GAG--------A-AGT-AGGGG---A-T--CCATTTGG-AGATCTAGACTTCAGTGATA 634
Query 843 GAAGGAATTTACTTCACATAGTGACAAG-CACTGTTGGTATACCTGTACC-TGATCTATC 900
||| ||| ||||| | |||||||||| || ||| || ||| || | ||| | ||
Sbjct 635 GAATGAACTTACTAGATATAGTGACAAAACA-TGTAAGTCTACGAGT-CGATGAACCATT 692
Query 901 AAGTG-AAAGGTTATTTCCCACT---TCGAAAGATGATGAAGCGGTGTTGTCTG-AACGC 955
|| | ||| ||||||||||| || ||| |||| |||||| || ||| || |||||
Sbjct 693 AACAGGAAAT-TTATTTCCCACCAGGTCAAAATATGACGAAGCGATGATGT-TGGAACGC 750
Query 956 AGAACCATGCTCCTTAAAATGCAT-AAGTTTGGTGTTGATTGGAATCACATGAACCTGGA 1014
|||| ||||||||||||||||| | || ||||||| | ||||| ||||| ||| ||||
Sbjct 751 AGAAACATGCTCCTTAAAATGC-TCAAATTTGGTGGAAACTGGAAGCACATAAACTTGGA 809
Query 1015 GGATGA-GTGTA-TAAATATTCCAA--ATC-AG-G-TAGACATAAACGAATCGT-GGAAG 1066
||| || | | | | | || ||| || || | |||||||||| ||| || ||||
Sbjct 810 GGAGGATGAGCAGTTG-TGTTACAATCATATAGAGATAGACATAAAAAAATTGTTGGAAA 868
Query 1067 CATCTTGGATT-TGA-AGTCGATAA--TCGGA--ACATGGACGCTGGGA-ATCAG---AC 1116
||||||| | ||| | | || || | ||| | || || | | || | || ||
Sbjct 869 -ATCTTGG-TGATGACATT-GACAACAT-GGAGGATATAGAGGATCAGATAG-AGGTTAC 923
Query 1117 ACAAAGGAAGA-G--CTTTAGTAGGTATTTCAGAAGTGGCAT-AAAGCATATTCTTGGGA 1172
|| |||||||| | |||| | ||| ||| ||||||||||| ||| |||||||||||||
Sbjct 924 ACCAAGGAAGAAGAGCTTTCGCCGGTTTTTAAGAAGTGGCATTAAA-CATATTCTTGGGA 982
Query 1173 GGT-CTAGTTCTTTAAAGAACACGTCTTCTTCAAGAAGTGAGACTAGACCTTGGAATCTC 1231
|| | ||||||| ||||| || || |||| || |||||||| |||| || ||||| |
Sbjct 983 AGTTC-AGTTCTTCAAAGATCAATTCGCCTTCGAGCAGTGAGACAAGACGTTCGAATCGC 1041
Query 1232 CAAAAATTTCTTAATTTTGGTGATTCCATAG-GTCTTAGTCTCAAAGCTTCCAAG-A-TT 1288
|||| ||||| | | |||| || | || | |||||||| |||||||| | | | ||
Sbjct 1042 CAAAGCTTTCTCAGCTCTGGTAATAC-ATTTTGCCTTAGTCTTAAAGCTTC-ATGCACTT 1099
Query 1289 AAGCTGTCTTCTTATCAAGGTTGGCCAAACATG-GACGAA-ACC-CGTTATGCCCTTTAT 1345
| ||||||| ||| |||| ||||||| |||| | || | || | || | ||||| ||
Sbjct 1100 T-GATGTCTTCATATGAAGGGTGGCCAATCATGAG-CGCAGACAACTTT-T-CCCTTCAT 1155
Query 1346 AAGCTACCGATTAAGAATCC-CATCGCTAACGAAGAGTATGCCGGCTTGTGGGGAGGAAC 1404
|| ||||| || ||||| || | ||| | |||| | |||||| || ||||||||||||||
Sbjct 1156 AAACTACCAATGAAGAAACCTC-TCGATCACGACGTGTATGCGGGTTTGTGGGGAGGAAC 1214
Query 1405 TTTTGGCTGGCCACCAGGAAAATG-TACAGAAGATAAACCCGGGAAGGCTCtttttttAC 1463
||||||||||| || || ||| | || |||||| | | | | ||| | |||
Sbjct 1215 GTTTGGCTGGCCCCCTGGGAAA-GATATTGAAGAT------G--A-GTCCCTTCTCTTAT 1264
Query 1464 TGATGCTCTCTTATGAAGAATCTCAAGATGGTACTGAAAGACTTCTTATAGGGACGAAAA 1523
| |||||| |||||| ||||||| |||| |||| ||| ||| ||||| | ||||||||||
Sbjct 1265 TAATGCTCACTTATGGAGAATCTGAAGAGGGTAGTGAGAGAATTCTTTTCGGGACGAAAA 1324
Query 1524 TACTCGAAGGAACTCACTACGGGATGCATCCTAATGGATC-TGCAATGTTTGTTATAAAG 1582
||||| | | | | | | | | ||||||||||||||| | ||||||||||| ||||
Sbjct 1325 TACTC-A-GTTATTT--TGCTG-A-GCATCCTAATGGATCCT-CAATGTTTGTTGTAAAT 1377
Query 1583 ATTGATTCACCTTCCTTTGAGCTTTTTCC-TTTCGATACAAATGGA-GAAGATTTTGAGC 1640
||||| | |||||| |||||| ||||| ||| |||||| ||||| || ||||| ||||
Sbjct 1378 ATTGACACGCCTTCCCTTGAGCCGTTTCCATTT-GATACAGATGGAAGA-GATTTCGAGC 1435
Query 1641 ATTCTTACGCAGGAGAAGGTA-CTGCAAAGGGTTATGGTTTCCGGTATCCTGGTTACAAA 1699
|||||||| | ||||| |||| | || | |||||||| ||||| || || |||| ||||
Sbjct 1436 ATTCTTACACGGGAGAGGGTATC-GCTGACGGTTATGGATTCCGATACCCCGGTT-CAAA 1493
Query 1700 -CCGGGTACACTTTTCGTAA-CATCTAAAGGTCTTCT--CATGTTTGTTTGGAAAGCAAC 1755
|| ||| | |||||||||| | ||||| | |||||| ||| | |||||| ||| |||
Sbjct 1494 ACCTGGTTCCCTTTTCGTAAGC-TCTAATGATCTTCTTGCAT-TC-GTTTGGCAAGGAAC 1550
Query 1756 TAAAGTTGTG-TTGACATTACAAAGACTTGACCTTGGAGAGCTCTT-AAG 1803
| ||| |||| || ||||| |||||| | ||||||||||| |||| |||
Sbjct 1551 TGAAGATGTGATT-ACATTGCAAAGAATAAACCTTGGAGAGATCTTGAAG 1599
> AT5G39480.1 | Symbols: | F-box family protein | chr5:15801635-15803341
REVERSE LENGTH=1707
Length=1707
Score = 632 bits (342), Expect = 3e-180
Identities = 682/840 (81%), Gaps = 48/840 (6%)
Strand=Plus/Plus
Query 199 GGAATCATTTGGTGCTTGCTTGCTTCTGT-CTCTTCCAGAAGATGTAATTGCTGTTATAG 257
|||||| ||||| |||||||||||||| | | |||||||||||||| ||||||||||
Sbjct 12 GGAATCGTTTGGAGCTTGCTTGCTTCT-TACGCTTCCAGAAGATGTGTTTGCTGTTATTT 70
Query 258 CTCGTTTTGTATCTCCAAGAGACATTTGCAATCTAAGCTTATGCTGCAAAAGTCT-CTGT 316
|||||||| | |||||||| || ||||||||||||| ||| ||| |||||||||| | |
Sbjct 71 CTCGTTTTCTTTCTCCAAGCGATATTTGCAATCTAATCTTGTGCGGCAAAAGTCTGC-CT 129
Query 317 GAGGTTTTTGATTCAGA-AAGGATCTGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTTTC 375
| || | ||| | || || ||| ||||||||||||||||||| ||||||||||||| |
Sbjct 130 GCCCTTGTCGATACCGAGAA-GATGTGGCTTGTGCAATGTGAAGAAGTAAAGGTTCTTCC 188
Query 376 TTTATCT-GAAATGA-TCCAATGGCGAATCGGAATCTCTTCTTATAAGGCGTTTTGTCGG 433
||| | | ||||| | |||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 189 TTTGT-TGGAAAT-AGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGTAGG 246
Query 434 TTTCTTGGAGAGGTAATGAAGCCTCTTGTTGGGGTTTGGGTTCACCAAAACCCTGAACTT 493
||||||| |||||| ||||||| ||| ||||| ||||||| || |||||||||||||||
Sbjct 247 TTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCTGAACTT 306
Query 494 GGGAATGTTGTTTATGTAATGCCTGGTTTTTTATCCGTTGTTGGGTGTCGGATAATTCCA 553
||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||||
Sbjct 307 GGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATTCCA 366
Query 554 CAAGAGGTTGGTCCTTTAG-GGATTGAGGAGG-CTCGAGTTATGTGGTCACCTGTGTTTG 611
||| |||||| ||||| | ||||| | |||| | ||||||| ||||||||| |||||||
Sbjct 367 CAAAAGGTTGCTCCTTC-GTGGATTCAAGAGGAC-CGAGTTAAGTGGTCACCGGTGTTTG 424
Query 612 AGATAATCTGCGGTTTTGATGGCTCTGCCAAGTTTTTCCTCCATGGAAGAGACGGAA-AA 670
||||||||||||| |||||||||||| | |||||||||||||||||||||| || ||
Sbjct 425 AGATAATCTGCGGGTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGACA-AAGAA 483
Query 671 CTGCA-TTGCTGCCTGCATCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGTAATGTGCT 729
||| ||||| || | |||||||||||||||||||||||||||||||| ||||| ||
Sbjct 484 G-GCAGTTGCT---TGTACCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGCAATGTACT 539
Query 730 TTTA-CTCGAGGTTGAGACGAGGCGAGAGAAGGAGTT-GTGCAGTGAGATTGAGACTGTG 787
| | ||||| |||| | |||||| ||||||| |||| ||||| ||||||||||| | |
Sbjct 540 TC-AGCTCGATGTTGTGCCGAGGCAAGAGAAG-AGTTCGTGCAATGAGATTGAGAGAG-G 596
Query 788 TTGT-TGG-GAGAGACAGGG-GTTCAGTTACCATTTCGCAAACTACCCTTT-AGTTATAG 843
| | ||||| |||| | | || |||||| | | || | |||| ||| ||||
Sbjct 597 A-GCCTCAAGAGAGG-AGGGAGAG-A-TT-CCATTTTGGATGCT-CGCTTTTAGTGATAG 650
Query 844 AAGGAATTTACTTCACATA--GTGACAAGC-ACTGTTGGTATACCTGTACCTG-ATCTAT 899
|| ||||| || || ||| ||||||||| | ||| || ||| ||| || | | ||
Sbjct 651 AAAAAATTTGCT-CA-ATATTGTGACAAGCCA-TGTAAGTCTACATGTGG-TGGAACCAT 706
Query 900 CAAGTGAAAGGTTATTTCCCAC-TTCGAAAGATGATGAAGCGGTGTTG-TCTGAACGCAG 957
|| ||||| |||||||||||| || |||| |||||||||| || || | |||||||||
Sbjct 707 TAAATGAAATGTTATTTCCCACATT-GAAATATGATGAAGCAATGCTGGT-TGAACGCAG 764
Query 958 AACCATGCTCCTTAAAATGCATAAGTTTGGTGTTGATTGGAATCACATGAACCTGGAGGA 1017
|||||| |||||||||||||| |||||||||| ||||||| ||||||| |||||||
Sbjct 765 AACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATTGGAAGAACATGAATTTGGAGGA 824
> AT5G39490.1 | Symbols: | F-box family protein | chr5:15805808-15807508
REVERSE LENGTH=1701
Length=1701
Score = 590 bits (319), Expect = 2e-167
Identities = 676/842 (80%), Gaps = 50/842 (6%)
Strand=Plus/Plus
Query 198 CGGAATCATTTGGTGCTTGCTTGCTTCTGTCT-CTTCCAGAAGATGTAATTGCTGTTATA 256
|||||| ||||||||||||||||||||| | | |||||||||||| | ||| ||||||
Sbjct 8 CGGAATTATTTGGTGCTTGCTTGCTTCT-TATGCTTCCAGAAGATATCTTTGTTGTTATC 66
Query 257 GCTCGTTTTGTATCTCCAAGAGACATTTGCAATCTAAGCTTATGCTGCAAAAGTC-TCTG 315
|||||||| | |||||||| || |||||||| |||| ||| ||| ||||||||| || |
Sbjct 67 TCTCGTTTTCTTTCTCCAAGCGATATTTGCAACCTAATCTTGTGCGGCAAAAGTCTTC-G 125
Query 316 TGAGGTTTTTGATTCAGA-AAGGATC-TGGCTTGTGCAATGTGAAGTAGTAAAGGTTCTT 373
|| || | ||||| || || || | ||||||||||||||||||| |||||||||||||
Sbjct 126 TGCCCTTGTCGATTCCGAGAA-GA-CATGGCTTGTGCAATGTGAAGAAGTAAAGGTTCTT 183
Query 374 TCTTTATCT-GAAATGA-TCCAATGGCGAATCGGAATCTCTTCTTATAAGGCGTTTTGTC 431
|||| | | ||||| | |||||||||||||||| ||||||||||| ||||| |||||
Sbjct 184 CCTTTGT-TGGAAAT-AGTCCAATGGCGAATCGGGATCTCTTCTTACAAGGCCCTTTGTA 241
Query 432 GGTTTCTTGGAGAGGTAATGAAGCCTCTTGTTGGGGTTTGGGTTCACCAAAACCCTGAAC 491
||||||||| |||||| ||||||| ||| ||||| ||||||| || |||||||||||||
Sbjct 242 GGTTTCTTGTAGAGGTGGTGAAGCCGCTTCTTGGGATTTGGGTGCAACAAAACCCTGAAC 301
Query 492 TTGGGAATGTTGTTTATGTAATGCCTGGTTTTTTATCCGTTGTTGGGTGTCGGATAATTC 551
||||||||||||||||||| ||||||||||| || || ||||||||||| ||||||||||
Sbjct 302 TTGGGAATGTTGTTTATGTGATGCCTGGTTTCTTGTCTGTTGTTGGGTGCCGGATAATTC 361
Query 552 CACAAGAGGTTGGTCCTTTAG-GGATTGAGGAGG-CTCGAGTTATGTGGTCACCTGTGTT 609
||||| |||||| ||||| | ||||| | |||| | ||||||| ||||||||| |||||
Sbjct 362 CACAAAAGGTTGCTCCTTC-GTGGATTCAAGAGGAC-CGAGTTAAGTGGTCACCGGTGTT 419
Query 610 TGAGATAATCTGCGGTTTTGATGGCTCTGCCAAGTTTTTCCTCCATGGAAGAGACGGAA- 668
||||||||||||||| |||||||||||| | |||||||||||||||||||||| ||
Sbjct 420 TGAGATAATCTGCGGGTTTGATGGCTCTAACGGGTTTTTCCTCCATGGAAGAGACA-AAG 478
Query 669 AACTGCA-TTGCTGCCTGCATCCTGGTTTTGTTATGGGCATTGAGAAGAGTTGTAATGTG 727
|| ||| ||||| || | |||||||||||||||||||||||||||| ||| ||||
Sbjct 479 AAG-GCAGTTGCT---TGTACCCTGGTTTTGTTATGGGCATTGAGAAGAATTGCGATGTA 534
Query 728 CTTTTA-CTCGAGGTTGAGACGAGGCGAGAGAAGGAGTT-GTGCAGTGAGATTGAGACTG 785
||| | ||||| |||| | |||||| ||||||| |||| ||||| ||||||||||| |
Sbjct 535 CTTC-AGCTCGAAGTTGTGCCGAGGCAAGAGAAG-AGTTCGTGCAATGAGATTGAGAGAG 592
Query 786 TGTTGT-TGGGAGAGACAGG-GGTTCAG-TTACCATTTCGCAAACTACCCTTT-AGTTAT 841
| | | ||| | ||| || || || |||||| | | || | |||| || ||
Sbjct 593 -GA-GCCTCA-AGA-A-AGGAGGGAGAGATT-CCATTTTGGATGCT-CGCTTTTAGCGAT 645
Query 842 AGAAGGA-ATTTACTTCACATAGTG--ACAAGC-ACTGTTGGTATACCTGTACCTG-ATC 896
|||| | | || || || ||| || |||| | | ||| ||| ||| ||| || | |
Sbjct 646 AGAAA-ACACTTGCT-CA-ATATTGTCACAAACCA-TGTAGGTCTACATGTGG-TGGAAC 700
Query 897 TATCAAGTGAAAGGTTATTTCCCAC-TTCGAAAGATGATGAAGCGGTGTTGTCTGAACGC 955
|| || ||||| |||||||||||| || |||||||||||||| | || |||||||
Sbjct 701 CATTAAATGAAATGTTATTTCCCACATT-GAAAGATGATGAAGTAAAGCTGAATGAACGC 759
Query 956 AGAACCATGCTCCTTAAAATGCATAAGTTTGGTGTTGATTGGAATCACATGAACCTGGAG 1015
|||||||| |||||||||||||| |||||||||| ||||||| ||||||| |||||
Sbjct 760 AGAACCATTCTCCTTAAAATGCACAAGTTTGGTGGAAATTGGAAGAACATGAATTTGGAG 819
Query 1016 GA 1017
||
Sbjct 820 GA 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97539658935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5