BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494045
Length=1615
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39410.1 | Symbols: | Saccharopine dehydrogenase | chr5:15... 2625 0.0
> AT5G39410.1 | Symbols: | Saccharopine dehydrogenase | chr5:15768193-15770410
REVERSE LENGTH=1723
Length=1723
Score = 2625 bits (1421), Expect = 0.0
Identities = 1559/1625 (96%), Gaps = 11/1625 (1%)
Strand=Plus/Plus
Query 1 AACCCAAAAAGTTTCTCCGTCTTCGATTCCGATCACAATGAACCCAACCCAAAAACCCGA 60
||||||||||| ||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 100 AACCCAAAAAGATTCTCCGTCTTAGATTCCGATCACGATGAACCCAACCCAAAAACCCGA 159
Query 61 CCCGGTTTACGATATCGTCATACTCGGAGCATCCGGATTTACCGGCAAATACGTCGTCAG 120
|||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct 160 ACCGGTTTACGATATGGTCATACTCGGAGCATCCGGATTTACCGGTAAGTACGTCGTCAG 219
Query 121 AGAAGCTCTCAAGTTCCTTCAAACA-C--CATCTTCTCCGTTAAAGTCTCTAGCTTTAGC 177
||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||
Sbjct 220 AGAAGCTCTCAAGTTCCTTCAAACACCGTCTTCTTCTCCGTTAAAGTCTCTAGCTTTAGC 279
Query 178 GGGTCGTAACCCGACCCGTTTAACCCAATCTCTCGAATGGGCCGCCCGCCCGAACCCACC 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 GGGTCGTAACCCGACCCGTTTAACCCAATCTCTCGAATGGGCCGCCCGCCCGAACCCACC 339
Query 238 TCCTTCCTCTGTCGCTATCCTCACTGCTGATACATCTGACCCTGATTCACTTCGTCGTCT 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 ACCTTCCTCTGTCGCTATCCTCACTGCTGATACATCTGACCCTGATTCACTTCGTCGTCT 399
Query 298 CTGTACTCAAACCAAACTCATCCTCAATTGTGTTGGACCGTTTCGTATCCATGGTGATCC 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 CTGTACTCAAACCAAACTCATCCTCAATTGTGTTGGACCGTTTCGTATCCATGGTGATCC 459
Query 358 TGTTGTCTCTGCTTGTGCTGATTCAGGGTGTGATTATTTGGATATAAGTGGTGAACCTGA 417
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 TGTCGTCTCTGCTTGTGCTGATTCAGGGTGTGATTATTTGGATATAAGTGGTGAACCTGA 519
Query 418 GTTCATGGAGAGAATGGAAGCTAACTACCATGAAAGAGCAGAAGAGACTGGCTCTTTAAT 477
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 520 GTTTATGGAGAGAATGGAAGCTAACTACCATGATAGAGCAGAAGAGACTGGCTCTTTAAT 579
Query 478 TGTTTCTGCTTGTGGTTTTGATTCGATTCCTGCTGAATTGGGTCTTCTCTTCAATGCTAA 537
||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 580 CGTTTCTGCTTGTGGTTTTGATTCAATTCCTGCTGAATTGGGTCTTCTCTTTAATGCTAA 639
Query 538 ACAATGGGTACCTCCATCGGTTCCTAACCAGATCGAAGCGTACCTTAGCTTGGAGTCTGA 597
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 640 ACAATGGGTATCTCCATCGGTTCCTAACCAGATTGAAGCGTACCTTAGCTTGGAGTCTGA 699
Query 598 CAAAAAGATTGCTGGAAACTTTGGGACTTATGAGTCTGCGGTTTTAGGTGTTGCTAATGC 657
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 700 CAAAAAAATTGCTGGGAACTTTGGGACTTATGAGTCTGCGGTTTTAGGTGTTGCTAATGC 759
Query 658 GGAAAAGCTTAAAGAACTGAGACGTTCAAGACCAAGAAGGCCAAGACCATCGATTTGTGG 717
||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 760 AGAAAAGCTTAAAGAATTAAGACGTTCAAGACCAAGAAGGCCAAGACCAACGATTTGTGG 819
Query 718 TCCTCCTGCTAAAGGACCAACACTAGAAAACCAGAAGACGATAGGTCTTTGGGCTTTAAA 777
|||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 820 TCCTCCTGCTAAAGGACCAACATTAGAAAACCAGAAGACGATTGGTCTTTGGGCTTTAAA 879
Query 778 GCTACCTTCTGCTGATGCAGTAGTTGTTCGTAGAACTCTCACAACTCTAACAGAGAAACC 837
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GCTACCTTCAGCTGATGCAGTAGTTGTTCGTAGAACTCTCACAACTCTAACAGAGAAACC 939
Query 838 ACATGGGCTTCCTGGGCTTAATGAAAGTCCTGAGCAGATACAAAAGAGAGAAGCATTTTG 897
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct 940 ACATGGGCTTCCTGGGATTAATGAAAGTCCTGAGCAGATACAAAAGAGAGAAGCATTCTG 999
Query 898 GTCATCGATCAAGCCAGCTCATTTCGGTGTAAAGATAACATCCAAATCTCTCTTTGGGAT 957
||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1000 GTCATCGATCAAGCCTGCTCATTTTGGTGTAAAGATAACGTCCAAATCTCTCTTTGGGAT 1059
Query 958 ATTCCGATATGTTACACTTGGAGTGTCCCTTGGTTTACTTTCCAAGTTCTCCTTCGGAAG 1017
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1060 ATTCCGATATGTTACACTTGGAGTGTCACTTGGTTTACTTTCCAAGTTCTCCTTCGGAAG 1119
Query 1018 ATGGCTTCTTTTGAAATTCCCTTCGGTTTTCAGCCTTGGTTGGTTCCAGAAGAAAGGTCC 1077
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1120 ATGGCTTCTTTTGAAATTCCCTTCAGTTTTCAGCCTTGGTTGGTTCCAGAAGAAAGGTCC 1179
Query 1078 AAGTGAAGAAGAGGTAGAAAGCGCTACGTTTAAGATGTGGTTCATAGGTCGTGGGTACAG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1180 AAGTGAAGAAGAGGTAGAAAGCGCTACGTTTAAGATGTGGTTCATAGGTCGTGGGTACAG 1239
Query 1138 CGAAGAGAGTCTAGCTTCACAAGGAGAAACAAAGCCTGACCTGGAAATTATTACAAGAAT 1197
|||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 1240 CGAAGAGAGTCTAGCTTCACAAGGAGAAACAAAGCCTGACTTGGAAATCATTACAAGAAT 1299
Query 1198 TTCAGGACCTGAGATTGGGTATATAACCACCCCGATAACACTTGTTCAATGCGGTCTGAT 1257
|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct 1300 TTCAGGACCTGAGATTGGATATATAACCACCCCGATAACACTTGTTCAATGCGGTTTGAT 1359
Query 1258 AGTCTTGGGCGAGCGCGAAAGCCTAGTTAAAGGAGGAGTCTACACACCCGGCATTGTGTT 1317
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1360 AGTCTTGGGCCAGCGCGAAAGCCTAGTTAAAGGAGGAGTCTACACACCCGGCATTGTGTT 1419
Query 1318 TGGTTCAACCAATATCCAGCAGCGACTTGAAGAGAATGGTATATCCTTTGAGGTGATTTC 1377
|||||||||| ||||||||||||||||||| || ||||||||||| |||||| |||||||
Sbjct 1420 TGGTTCAACCGATATCCAGCAGCGACTTGAGGATAATGGTATATCTTTTGAGCTGATTTC 1479
Query 1378 AAAGATCAAGACTCAAGGATAAAAAGAGATCTCTTCTCCTGCTTTTCTATTCTGTTTTTA 1437
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1480 AAAGATCAAGACTCAAGGATAAAAAGAGATCTCTTATCCTGCTTTTCTATTCTGTTTTTA 1539
Query 1438 GTTGTTATGTT-TAGCTTTTCAGTCACAGTGAAGACAGTTTGATGGTAAGTTGTATTCCA 1496
||||||||||| | |||| |||| ||| |||||||||||||||||||||||||||||||
Sbjct 1540 GTTGTTATGTTAT-GCTTCACAGTGACATTGAAGACAGTTTGATGGTAAGTTGTATTCCA 1598
Query 1497 ATAATGA-AAAACCGTTTCCTTTACTTTTACTATGGA--T-T-TATGTACTCAAAACAGA 1551
||||| | ||||| ||||||||||| ||| ||||||| | | |||||||||||||||||
Sbjct 1599 ATAATAATAAAACTGTTTCCTTTACGTTTGCTATGGAGATATGTATGTACTCAAAACAGA 1658
Query 1552 GAATCTGGTTCTTAAAACTGGAAACAGACCATCCTAGTGAAAAAA-TGGATGGTAAGAGA 1610
|||| |||||||||||||||||||||||||||| || |||||||| ||||||||||||||
Sbjct 1659 GAATGTGGTTCTTAAAACTGGAAACAGACCATCTTAATGAAAAAAATGGATGGTAAGAGA 1718
Query 1611 ATCCC 1615
|||||
Sbjct 1719 ATCCC 1723
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79768666005
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5