BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494047
Length=1872
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39380.1 | Symbols: | Plant calmodulin-binding protein-rela... 2174 0.0
> AT5G39380.1 | Symbols: | Plant calmodulin-binding protein-related
| chr5:15758717-15760686 REVERSE LENGTH=1970
Length=1970
Score = 2174 bits (1177), Expect = 0.0
Identities = 1388/1489 (93%), Gaps = 18/1489 (1%)
Strand=Plus/Plus
Query 1 ATGATGAATAAGGAAGATGGTTCT-AGCCCGGGAGGTGATTCTACAGGGAAGGCAATGGC 59
|||||||||||||||||||||| | | |||||||||||||||||||||||||||||| |
Sbjct 43 ATGATGAATAAGGAAGATGGTT-TGAATCCGGGAGGTGATTCTACAGGGAAGGCAATGAC 101
Query 60 TTCAAAGTCTAAAGAGAAAAAGATCCCTCATTACCTCAGAGCATCCACTGGTTCGTGTCA 119
||||||| |||||||||||||||| |||||||| ||||||||||| ||||||||||||||
Sbjct 102 TTCAAAGCCTAAAGAGAAAAAGATTCCTCATTATCTCAGAGCATCAACTGGTTCGTGTCA 161
Query 120 TGATTTGTGCAAGTATGGGAAGAGACAGATACCTGTGGAGAAACCATGGCGTTCGACTAC 179
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 162 TGATTTGTGTAAGTATGGGAAGAGACAGATACCTGTGGAGAAACCATGGCGTTCGAGTAC 221
Query 180 TAAAAAGATCTTCAAGAAATCTCTTGATGATGATTTGAATGAAACTTTGAAGCCGGGTTC 239
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 222 TAAAAAGATCTTCAAGAAATCTCTTGATGATAATTTGAATGAGACTTTGAAGCCGGGTTC 281
Query 240 TTCT-AAA-G-TGAAGAAGGTAATGGATGTCAAGaaaaa-aaTGGTTAGTGATGATTCTT 295
|||| ||| | ||||||||| | ||| ||| ||||||| | || || |||||||||||
Sbjct 282 TTCTAAAATGAAGAAGAAGGTGAGGGAAGTCGAGAAAAACGA-GGGTACTGATGATTCTT 340
Query 296 CGGAGGTGATAAAAAGAGAGGTTGTGAAGCATCAAGTGAGTGGTGTCTCTAGTGGGGTGA 355
|||||||| |||||||||||||||||| |||||| ||||||||||||||||||| |||
Sbjct 341 TTGAGGTGATTAAAAGAGAGGTTGTGAAGTATCAAGCGAGTGGTGTCTCTAGTGGGATGA 400
Query 356 AGAAGCCAGAGGTATTGATAATATCATCTGGTGATGAAACTCCTGTGAAGCAGATGAAGA 415
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 401 GGAAGCCAGAGGTATTGATAATATCATCTTGTGATGAAACTCCTGTGAAGCAGATAAAGA 460
Query 416 AGAAGACAACATTAAGTTCCAAACTTAAACCTTCACCAGATTTGGGATCTCGTTCATCAG 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 461 AGAAGACAACATTAAGTTCCAAACTTAAACCTTCACCAGATTTGGGATCTCGTTCATCAG 520
Query 476 GAAATGTTGATGCCCTGAAGCCGAAAGT-TTTAACGAAATCGTATTCAGCACTAG-CAAC 533
||||||||||||||||||||| ||||| || || |||||| ||||||||||| | ||||
Sbjct 521 AAAATGTTGATGCCCTGAAGCCAAAAGTCTTGAA-GAAATCTTATTCAGCACT-GACAAC 578
Query 534 ATCGAAATCTAAGGTAAACCATG----AGCCTGTTGCTTCACCAGTTTTGAAACCTAAAA 589
|||||| | || |||||||||| || |||||| ||||||||||||||||||||||
Sbjct 579 GTCGAAACCAAAAGTAAACCATGAAAAAG-TTGTTGCGTCACCAGTTTTGAAACCTAAAA 637
Query 590 TGGGTAAAAGAAGTGAAGGAAAAGAAGATGATGCAAAGATAAAGAAGGTTACAGTTTCCT 649
|||||||||||| ||| |||||||| || |||| |||| | ||||||| |||||||||||
Sbjct 638 TGGGTAAAAGAAATGATGGAAAAGACGAAGATGGAAAGGTCAAGAAGGGTACAGTTTCCT 697
Query 650 CAAGAGTTGCTTCTAAGAAGGTTCCGGTGACTCCTAGAGCGTCGCTTTCTCCAAGATTAT 709
||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||
Sbjct 698 CAAGAGTAGCTTCTAAGAAGGCTCCGGTGACTCCAAGAGCGTCGCTTTCTCCAAGATTAT 757
Query 710 CACTAAGAGTAGCTGGAAATTCAAGTTTGAGAAAGAGTCAGAGCTTAAAGGCCGGC-TCT 768
|| ||||| ||||||||| |||||||||||||||||||||||||||||||| | || |||
Sbjct 758 CAGTAAGACTAGCTGGAAGTTCAAGTTTGAGAAAGAGTCAGAGCTTAAAGG-CTGCATCT 816
Query 769 TCCTCTTCTCGGCAAAATCAGAAACCAAAACGTGTGAATCACACTGATGAATCTAATAAG 828
||||||||||| |||||||||||||| | || ||||||| ||||||||||| ||||||
Sbjct 817 TCCTCTTCTCGACAAAATCAGAAACCGAGACCCGTGAATCGCACTGATGAATTTAATAAA 876
Query 829 CAGTTGGATGATTATCCAGTCGAGGAGAAAACATTGCACGTTGTTGAAATGGAAACAACT 888
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 877 CAGTTGGATGATTATCCAGTCGAGGAGAAAACATTGCACGTTGTTGAAATGGAAACAACT 936
Query 889 AACAATGTCGTCTCTGAAAATGATCAGAATCAGCAAGGTTTTGTTGAACCTTTTCTTCCT 948
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 937 AACAATGTCGTCTCTGAGAATGATCAGAATCAGCAAGGATTTGTTGAACCTTTTCTTCCT 996
Query 949 CCTCTTCCACCGACCCACTCAACTCCAAAAGATGATGAGTGTACTGTTTCAGAAACAGAG 1008
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 997 CCTCTTCCACCGACCCAATCAACTCCAAAAGATGATGAGTGTACTGTTTCAGAAACAGAG 1056
Query 1009 GAGTATGAGTACACTTCAGGAAGCAACGAAGCTGAGAGCGAAGAAGAAGAGATTGGATTG 1068
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1057 GAGTACGAATACACTTCAGGAAGCAACGAAGCTGAGAGCGAAGAAGAAGAGATTGGATTG 1116
Query 1069 TCCAATGGAGAGaaaaaaaCAAGAGCGGCGAGAAAGGAGGGTGATTCTGCAGATGAAGCT 1128
|||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1117 TCCAATGGAGAGAAGAAACCAAGAGCGGCGAGAAAGGAGGGTGATTCTGCAGATGAAGCT 1176
Query 1129 GCTCGGAAGTTACGTTTCAGAAGAGGAAAAATTGTGGATGCTGATACTGTGGGTGAGAGT 1188
|| ||||||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 1177 GCACGGAAGTTACGTTTCAGAAGAGGAACAATTGTGGATCCTGATACTGTAGGTGAGAAA 1236
Query 1189 GCAAGGAAGCTCAAGTTTAGACGAGGAAGGGATCTAGGGGAAGACAAAGCGCAAGATGCT 1248
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1237 GCAAGGAAGCTCAAGTTTAGACGAGGAAGGGGTCTAGGGGAAGACAAAGCGCAAGATGCA 1296
Query 1249 CAAGTTAGGAGAAGCTTTAAGAAGAGGGAAGATATCAGAGGAGAAGAAGTCGATGAGGAT 1308
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 1297 CAAGTTAGGAGAAGCTTTAAGAAGAGGGAAGATATCAGAGAAGAAGAAGTCAATGAGGAT 1356
Query 1309 GGTGAAAAAGTTGTGCTGAGGCATCAAGATGTACAGGAGAAAGATGCACAGGGACTGTTC 1368
||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1357 GGTGAAAAAGTTGTGTTGAGGCATCAAGATGTTCAGGAGAAAGATGCACAGGGACTGTTC 1416
Query 1369 AACAATGTCATTGAAGAAACAGCGAGTAAACTCGTTGAAGCTCGAAAAAGCAAAGTTAAA 1428
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1417 AACAATGTCATTGAAGAAACAGCGAGTAAACTCGTCGAAGCTCGAAAAAGCAAAGTTAAG 1476
Query 1429 GCTTTGGTTGGTGCTTTCGAAACCGTCATTTCTCTTCAAGAATCTTAAA 1477
|||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1477 GCTTTGGTTGGTGCTTTCGAAACCGTTATTTCTCTTCAAGAATCTTAAA 1525
Score = 492 bits (266), Expect = 6e-138
Identities = 366/408 (90%), Gaps = 31/408 (8%)
Strand=Plus/Plus
Query 1477 AGCTAACATTGAATCT-T-TGA-TTTTC---TAGTAGTAGTTTATTTGGTTTTGGTTTCT 1530
|||||||||||| ||| | ||| ||||| |||||||||||||||||||||||||||||
Sbjct 1569 AGCTAACATTGAGTCTCTATGATTTTTCTAGTAGTAGTAGTTTATTTGGTTTTGGTTTCT 1628
Query 1531 AGATTGAGCCGGTTTGAATCGTTTCGGTTTGTTGAACCTGAAGAAGATTTGATGCTTCAT 1590
||||||||||||| |||||||||| | ||||||| ||||||||||| ||| ||||||
Sbjct 1629 AGATTGAGCCGGTGTGAATCGTTT---T--GTTGAAC-TGAAGAAGATT-GATACTTCAT 1681
Query 1591 ACAAAGTTAAAGGATATGTCTCTGCCAAACATTAATAGTGGTGCTTTGTGAATAATACTT 1650
| ||||||||||| | |||||||||||||| | | | |||||||||||||||||||
Sbjct 1682 AGAAAGTTAAAGG-T----CTCTGCCAAACATT--T-G-G-TGCTTTGTGAATAATACTT 1731
Query 1651 -GATGGAttggggtttgtgtttggttttggttcttctagaccggtttgttggttttcatt 1709
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1732 TGATGGATTGGGGTTTGTGTTTGGTTTCGGTTCTTCTAGACCGGTTTGTTGGTTTTCATT 1791
Query 1710 ggattgtttgggtttatggttcAGTTTGTATAGAAAAATTCTGCTCT-GTTTTCTTACAT 1768
|||||||||||||||||| |||| ||||||||||||||||||| ||| |||| |||||||
Sbjct 1792 GGATTGTTTGGGTTTATGATTCAATTTGTATAGAAAAATTCTGGTCTAGTTT-CTTACAT 1850
Query 1769 TTGTTGTTGGTTTTTGTCTT---GTA-AAACGAAGCACTTTCAATAGGTTTTCTTTCTGC 1824
|||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||
Sbjct 1851 TTGTTGTTGGTTTTTGTCTTCTTGTAGAAA-GAAGCACTTTCAATAGGTTTTCTTTCTGC 1909
Query 1825 TTAAACCGGATCCTAAACCGTATTTTCTGGTTTTGCATAACACCGATC 1872
|||||||||||| ||||||||| |||||||||||||| ||||||||||
Sbjct 1910 TTAAACCGGATCGTAAACCGTAATTTCTGGTTTTGCAGAACACCGATC 1957
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92670206070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5