BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494048
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17040.2 | Symbols: SHA | SH2 domain protein A | chr1:582484... 2904 0.0
AT1G78540.2 | Symbols: SHB | SH2 domain protein B | chr1:295410... 688 0.0
> AT1G17040.2 | Symbols: SHA | SH2 domain protein A | chr1:5824848-5828233
FORWARD LENGTH=2394
Length=2394
Score = 2904 bits (1572), Expect = 0.0
Identities = 1819/1936 (94%), Gaps = 25/1936 (1%)
Strand=Plus/Plus
Query 412 AGGTTCACTCTGACATGAGCGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 471
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 449 AGGTTCACTCTGACATGAGTGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGA 508
Query 472 TGATGCTTTTGCCATTGACTCTCCTTCACAATGAAGCTCCTGATCCTGTTAACATTTCTT 531
|||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 509 TGATGCTTTTGCCATTGACTCTCCTTCACAGGGAAGCTCCTGATCCTGTTAACACTTCTT 568
Query 532 CTTGGACTGAAGTTCCTAATGTTTCTACAACTGCTGAGTTTCCTCTTCAAAAATGGGTTC 591
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 569 CTTGGACTGAAGTTCCTAATGTTTCTACAACGGCTAAGTTTCCTCTTCAAAAATGGGTTC 628
Query 592 ATGTGGGTTGCGAGGTTTCTAGAAACTACATGCGCCTTTATATTTGTGGAGAGATTGTAG 651
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 629 ATGTGGGTTGTGAGGTTTCTAGAAACTATATGCGCCTTTATATTTGTGGAGAGCTTGTAG 688
Query 652 GAGAGCAAGTCTTAACTTCCTTGATGACCAATAGTACAAATTCAGATTGCGCACGAAAGA 711
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 689 GAGAGCAAGTCTTAACTTCCTTGATGACCAATGGTACAAATTCAGATTGCGCACGAAAGA 748
Query 712 TATCGTTATTCAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACTGTGCTG 771
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 749 TATCGTTATTTAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACAGTGCAG 808
Query 772 AAGTTTTGCCTTCTAATGTCCCGGCAAATTATCACTACACAAAGGACCCACCTTTATGGT 831
||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||||
Sbjct 809 AAGTTTTGCCTTCTAATCTCTCTGCAAGTTATCACTACACAAAGGACCCACCTTTATGGT 868
Query 832 TATCTGTTGATAAGCCATCTACATCTGGAATTGGATTAGATAAAGATGGTGTTTGGATTA 891
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||| |
Sbjct 869 TATCTGTTGATAAGCCATCTACATCTGGAATTGAATTGGATGAAGATGGTGTTTGGAGTG 928
Query 892 TCGTTAGCGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCCTG 951
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TCGTTAGTGGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCCTG 988
Query 952 TGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGATGCCA-GTT 1010
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 989 TGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGACG-CATGTT 1047
Query 1011 GAGAAGATGAGTGACTCGGAGGC-TCCCCTTTTGGTAAGCTATGAAGG-AGTTGAATTCT 1068
||||||| |||||||| ||||| | |||||| |||||||||||||| | ||||||| |
Sbjct 1048 GAGAAGAGGAGTGACTTTGAGGCAT-TCCTTTTAGTAAGCTATGAAGGCA-TTGAATTAT 1105
Query 1069 CTGCTGAAGATAAGCCATGCAACTTATTGAACGGATGTGCTTCTTTCAAGCTCAAATTAT 1128
||||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1106 CTGCTGAAGATAAACCGTGCAACTTATTGAACGGATGTGCTTCTTTCAAGTTCAAATTAT 1165
Query 1129 CTCAGCTTTCTTCCAAGAGTGATAAGAGATTGTTCTGTGTCAAATTCGAAATACCAGAAG 1188
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1166 CTCAGCTTTCTTCCAAGAGTGATAAGAGGTTGTTCTGCATCAAATTCGAAATACCAGAAG 1225
Query 1189 TGAAGGCCTATTATCCTTTCCTTGAAACTGTTACCAACCAAATCCGTTGCATTTCGAGGA 1248
|||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| |
Sbjct 1226 TGAAGGCCAATTATCCTTTCCTCGAAACTGTCACCAACCAAATCCGTTGCATTTCGAGAA 1285
Query 1249 ACCATGATTCTCTTTCCTCTATGAAACGGATCAGATTAGGGGAAGAAAAGGTTTCTGAGA 1308
||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1286 ACCGTGATTCTGTTTCCTCTATGAAACGGATCAGATTAGGAGAAGAAAAGGTTTCTGAGA 1345
Query 1309 GTGAGATTGAGAATGGAAATGGTACGAGTATGGAATGGAGACCTCAGAACCACGAAGAAG 1368
|| |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1346 GTAAGATTGTGAATGGAAATGGTACGAGTATGGAATGGAGGCCTCAGAACCACGAAGAAG 1405
Query 1369 ATAACTCTTCAACTGATTCCGAAAACACTGAAATTAGAGACTCGACTGCTTTCAGGAGAT 1428
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1406 ATAACTCTTCAACTGATTCCGAAAACACTGAAATGAGAGACTCGACTGCTTTCAGGAGAT 1465
Query 1429 ATACAATCTCAGACTCGATTATTTTCAAATACTGCCTTGGAAACTTAACAGAGAGAGCTC 1488
|| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1466 ATTCAATCCCAGACTGGATTATTTTCAAATACTGCCTTGGAAACTTAACAGAGAGAGCTC 1525
Query 1489 TTCTTCTGAAGGAAATCACAAATAATTCATCAGATGAAGAAGTCTCGGAATTTGTAGATC 1548
|||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |||||
Sbjct 1526 TTCTTCTGAAGGAAATCACAAACAATTCATCAGACGAAGAAGTCTCGGAATTTGCAGATC 1585
Query 1549 AAGTTTCTCTCTATTCCGGATGCTTCCACCACAGCTATCAAATCAAAATGGCAAGACAAT 1608
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 1586 AAGTTTCTCTCTATTCCGGATGCTCCCACCACGGCTATCAAATCAAAATGGCAAGAAAAC 1645
Query 1609 TGATAGCAGAAGGAACAAATGCGTGGAATCTGATATCTCGGAACTATCAACATGTTCATT 1668
|||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1646 TGATAGCAGAAGGAACAAATGCGTGGAATCTGATCTCTCGGAACTATCGACATGTTCATT 1705
Query 1669 GGGACAATGTGGTAATTGAGATTGAAGAACATTTCATGAGAATAGCTAAATGCAGCAGTA 1728
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1706 GGGACAATGTGGTAATTGAGATTGAAGAACATTTCATGAGAATAGCTAAATGCAGCAGTA 1765
Query 1729 GATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGAATATGTGGATGCTATGAATACA 1788
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1766 GATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGGATATGTGGATGCTATGAATACA 1825
Query 1789 TAACTCAAGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCTTCGGCTATAT 1848
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1826 TAACTCAAGAGAATTTTGAGACAATGTGGTGTTGGTTGTTCCCTGTTGCTTCGGCTGTAT 1885
Query 1849 CCAGGGGATTGATTAACGGAATGTGGCGCTCAGCTTCGCCTAAATGGATAGAAGGGTTTG 1908
| ||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1886 CAAGGGGGTTGATTAATGGAATGTGGCGCTCTGCTTCGCCTAAATGGATAGAAGGGTTTG 1945
Query 1909 TGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATCAAGTAGCGGGAACTTTCATTCTCA 1968
||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 1946 TGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATCAAGTACCGGGCACTTTCATTCTCA 2005
Query 1969 GGTTCCCTACTTCAAGAAGCTGGCCACATCCTGATGCTGGTTCCTTGGTTGTGACTTATG 2028
|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 2006 GGTTCCCTACTTCAAGAAGCTGGCCACATCCTGACGCTGGTTCCGTGGTTGTGACTTATG 2065
Query 2029 TCGGTCATGATTTAGTTATTCATCATAGATTACTCGCAATCGGTCACATCTGCGATTCTA 2088
|||| |||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 2066 TCGGCCATGATTTAGTTATTCATCATAGATTACTCACAATCAACCACATCTGCGATTCTA 2125
Query 2089 GTGAAAGGTATACAGATGCAAAACCGTTGCAAGATATGCTTTTGGCGGAACCTGAGCTAT 2148
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2126 GTGAAAGGTATACAGATGCAAAACAGTTGCAAGATATGCTTTTGGCGGAACCTGAGCTAT 2185
Query 2149 CCCGGCTTGGAAGGGTTATATGAGGCATTTGAAT--A-TCAACA--C--A-CTCAACAA- 2199
| |||||||||||| ||||| ||||||| ||||| | |||||| | | ||||||||
Sbjct 2186 CTCGGCTTGGAAGGATTATAAGAGGCATCTGAATCTAATCAACAGACTCAACTCAACAAA 2245
Query 2200 GATAGACAAGCATCAACTATTATTGAGGTTTATTATACTTTGATAGATTTGCTAAGTCTC 2259
| |||| ||||||| ||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 2246 G-TAGAGAAGCATCGACTGTTATTGAGGTTTATTGTACA--GATAGATTTGCTAAGTCTA 2302
Query 2260 TCTATTTACTGATGATACTAACTTGTGTAAAGGAAGCTCAGTGATTTAAATTAGGTGGAA 2319
|||| |||||| | ||||||| ||||||| ||||||||||||||||||||||||
Sbjct 2303 AGTATTAACTGAT-A--CTAACTTTTGTAAAG----CTCAGTGATTTAAATTAGGTGGAA 2355
Query 2320 AGGGTTTTTATTTTAA 2335
||| |||||||| |||
Sbjct 2356 AGGATTTTTATTGTAA 2371
Score = 638 bits (345), Expect = 0.0
Identities = 399/424 (94%), Gaps = 7/424 (2%)
Strand=Plus/Plus
Query 1 TATAGACTGAAACCACCGGAAGACGACGGTACCAACCGTTAATTAACAGCCGTCAAAAGA 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 7 TATAGACTGAAACCACCGGAAGACGACGGTACGAACCGTTAATTAACAGCCGTCAAAAGA 66
Query 61 CGTGACGAAACATTCCTCAGCGTTTCCTTTCAGTTTCCTTTAAGCTCTCGATTGTGTTTG 120
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 67 CGTGACGAAAAATTCCTCAGCGTTTCTTTTCAGTTTCCTTTAAGCTCTCGATTGTGTTTG 126
Query 121 TTTAGGCAACGAGAAAAAAGCGAGAGAAA-GATAAAGGttttcac---ttttttcttcat 176
|||||| |||||||||||||||||| ||| || ||||||||| || ||||||||||||
Sbjct 127 TTTAGGTAACGAGAAAAAAGCGAGACAAACGAAAAAGGTTTT-ACTTTTTTTTTCTTCAT 185
Query 177 ctgtctgtattttcattttctgggttttaagggtttcGCTTGCAAAGTCGAGAGCTTTTT 236
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTGTGTGTATTTTCATTTTCTGGGTTTTAAGGGTTTCGCTTGCAAAGTCGAGAGCTTTTT 245
Query 237 CTTTTTGGGTGGGTTACAATGGCGGGTGATTGTGCAATTGACACCGAGAAATACTCTCTG 296
| | ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 246 ATCT--GGGTGTGTTATAATGGCGGGTGATTGTGCGATTGACACCGAGAAATACTCTCTG 303
Query 297 TTGGAGGATTTTAATGTCGATGTTGAAGTCGAAAACAAAGCTTTTGAGACTTTCTCGCTT 356
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 304 CTGGAGGATTTTAATGTCGATGTTGAAGTCGAAAACAAAGCATTTGAGACTTTCTCACTT 363
Query 357 TGTTTTTGGGTTTATCTCTTAGATTCCACCACATACCCTTCTACAATTATCAGACAGGTT 416
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 364 TGTTTTTGGGTTTATCTCTTAGATTCCACCACATACCCTTCTGCAATTATCAGACAGATT 423
Query 417 CACT 420
|||
Sbjct 424 AACT 427
> AT1G78540.2 | Symbols: SHB | SH2 domain protein B | chr1:29541011-29544777
REVERSE LENGTH=2478
Length=2478
Score = 688 bits (372), Expect = 0.0
Identities = 629/751 (84%), Gaps = 26/751 (3%)
Strand=Plus/Plus
Query 1424 GAGATATACAATCTCAGACTCGATTAT-TTTCAAATACTGCCTTGGAAACTTAA-CAGAG 1481
|||||| ||||||||||| || | || ||| || ||||||||||||||||||| | ||
Sbjct 1454 GAGATACACAATCTCAGATTCCACCATCTTT-AAGTACTGCCTTGGAAACTTAATC-GAC 1511
Query 1482 AGAGCTCTTCTTCTGAAGGAAATCACAAATAATTCATCAGATGAAGAAGTCTCGGAATTT 1541
| |||||| ||||| |||||||||||||| || |||||||| || ||||| | |||||||
Sbjct 1512 AAAGCTCTACTTCTAAAGGAAATCACAAACAACTCATCAGACGATGAAGTTTTGGAATTT 1571
Query 1542 GTAGATCAAGTTTCTCTCTATTCCGGATGCTTC-CACCACAGCTATCAAATCAAAATGGC 1600
| | |||| |||||||| || || ||||| ||| ||||| |||||||||||||| |||||
Sbjct 1572 GCAAATCAGGTTTCTCTGTACTCTGGATG-TTCACACCATAGCTATCAAATCAACATGGC 1630
Query 1601 AAGACAATTGATAGCAGAAGGAACAAATGCGTGGA-ATCTGATATCTCGGAACTATCAAC 1659
|||| | | |||||||||||||||||||| |||| || |||||||||||||| ||||||
Sbjct 1631 AAGAGAGCTAATAGCAGAAGGAACAAATGCATGGATAT-TGATATCTCGGAACAATCAAC 1689
Query 1660 ATGTTCATTGGGACAATGTGGTAAT-TGAGATTGAAGAACATTTCATGAGAATAGCTAAA 1718
||||||||||||| |||||||| | |||||||||||||||||||||||| || | |||
Sbjct 1690 ATGTTCATTGGGATAATGTGGT-CTATGAGATTGAAGAACATTTCATGAGGATTTCAAAA 1748
Query 1719 TGCAGCAGTAGATCTCTCACTCACCAGGATTTTGACCTTCTAAGAAGAATATGTGGATGC 1778
|||||||||||||||||||| |||||||||||||| |||||||| ||||||| ||||||
Sbjct 1749 TGCAGCAGTAGATCTCTCACCCACCAGGATTTTGAGCTTCTAAGGAGAATATCAGGATGC 1808
Query 1779 TATGAATACATAACTCAAGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCT 1838
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1809 TACGAGTACATAACTCAGGAGAATTTTGAGAAAATGTGGTGTTGGTTGTTCCCTGTTGCT 1868
Query 1839 T-CGGCTATATCCAGGGGATTGATTAACGGAATGTGGCGCTCAGCTTCGCCTAAATGGAT 1897
| | | |||||| |||| ||||| |||||||||||||| || | ||||||||||||||
Sbjct 1869 TACTCC-ATATCCCGGGGCTTGATAAACGGAATGTGGCGTTCTTCATCGCCTAAATGGAT 1927
Query 1898 AGAAGGGTTTGTGACTAAAGAAGAGGCAGAACGTTCGCTTCAGAATC-AAGTAGCGGGAA 1956
||||| || | || || ||||| || |||| ||||||||| | | ||| | | ||||
Sbjct 1928 TGAAGGATTCATCACCAAGGAAGAAGCTGAACATTCGCTTCA-AGGCCAAGAACCAGGAA 1986
Query 1957 CTTTCATTCTCAGGTT-CCCTACTTCAAGAAGCT-GGCCACATCCTGATGCTGGTTCCTT 2014
| ||||| || | ||| ||||| |||||||| || |||| || |||||||||||| ||
Sbjct 1987 CCTTCATACT-ACGTTTCCCTATTTCAAGAA-CTTGGCCTCACCCTGATGCTGGTAGTTT 2044
Query 2015 GGTTGTGACTTATGTCGGTCATGATTTAGTTATTCATCATAGATTA-CTCGCA-ATCGGT 2072
||||||||||||||||||||||||||| | | ||||||||| | | ||| | |||| |
Sbjct 2045 GGTTGTGACTTATGTCGGTCATGATTTCGCTCTTCATCATA-AGCAACTCA-AGATCGAT 2102
Query 2073 CACATCTGCGATTCTAGTGAAAGGTATACAGATGCAAAACCGTTGCAAGATATGCTT-TT 2131
|||||||||| |||||||||||| | |||||||||||| |||| |||||| || ||
Sbjct 2103 AACATCTGCGAAAGTAGTGAAAGGTACATGGATGCAAAACCGCTGCAGGATATG-TTGTT 2161
Query 2132 GGCGGAACCTGAGCTATCCCGGCTT-GGAAG 2161
||| ||||||||||| || ||| || |||||
Sbjct 2162 GGCTGAACCTGAGCTCTCTCGG-TTAGGAAG 2191
Score = 664 bits (359), Expect = 0.0
Identities = 857/1086 (79%), Gaps = 79/1086 (7%)
Strand=Plus/Plus
Query 192 ttttctgggttt-taagggtttcGCT-TGCAAAGTCGAGAGCTTTTTCTTTTTGGGTG-G 248
|||||| ||||| ||||||||||| | | ||||||| ||| ||| |||| |||||
Sbjct 148 TTTTCTTGGTTTATAAGGGTTTCG-TATACAAAGTC--GAG---TTT-TTTTGGGGTGAA 200
Query 249 GTTACAATGGCGGGTGATTG-TGCAATTGACACCGAGAAATACT-CTCTGTTGGAGGATT 306
| | ||||||| ||| | | ||||||| || |||||||||| || | || || ||||
Sbjct 201 G-T--AATGGCGAGTG-CAGCTACAATTGAGACGGAGAAATACTCCT-TATTAGAAGATT 255
Query 307 TTAATGTCGATGTTGAAGTCGAAAACAAAGCTTTTGAGACTTTCTCGCTTTGTTTTTGGG 366
||||||| ||||||||||| || | ||| | || | |||||| |||||||| ||||
Sbjct 256 TTAATGTTGATGTTGAAGTAGACGATGAAGAATACGAAAGTTTCTCCCTTTGTTTCTGGG 315
Query 367 TTTATC-TCTTAGATTCCACCACATACCCTTCTACAATTATCAGACAGGTTCACTCTGAC 425
|||||| ||||| |||||||||||| ||| ||||| || || |||||||||||||| |||
Sbjct 316 TTTATCTTCTTA-ATTCCACCACATTCCCATCTACCATCATTAGACAGGTTCACTCAGAC 374
Query 426 ATGAGCGTTAGTGCACCTTTCCTTGTTCTAGATGAAAACAAGAAGATGATGCTTTTGCCA 485
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 375 ATGAGTGTTAGTGCACCTTTCCTTGTGCTAGATGAAAACAAGAAGATGATGCTTTTGCCA 434
Query 486 TTGACTCTCCTTCACAATGAAGCTCCTGATCCTGTTA-ACATTTCTTCTTGGACTGAAGT 544
||||||||||||||||| ||||||||||||||||| | ||| |||||| ||||| ||||
Sbjct 435 TTGACTCTCCTTCACAAGGAAGCTCCTGATCCTGT-AGACACTTCTTCCTGGACACAAGT 493
Query 545 TCCTAATGTTTCTACAAC-TGCTGAGTTTCCTCTTCAAAAATGGGTTCATGTGGGTTGCG 603
||||| |||||||||| | | ||||||||||| |||||||||||||||||||||| |
Sbjct 494 TCCTAGCGTTTCTACAAAATCCA-AGTTTCCTCTTGAAAAATGGGTTCATGTGGGTTGTG 552
Query 604 AGGTTTCTAGAAACTACATGCGCCTTTATATTTG-TGGAGAGATTGTAGGAGAGCAAGT- 661
||||||||||||| | ||| | |||| |||| | |||| | || | ||||||||| ||
Sbjct 553 AGGTTTCTAGAAATTTTATGAGGCTTTTTATT-GATGGAAATATGGAAGGAGAGCA-GTT 610
Query 662 CTTAACTTCCTTGATGACCAATAGTACAAAT-TCA-GATTG-CGCACGAAAGATATCGTT 718
| | ||||| ||| |||| || || || | || || || | | |||||||||||| |
Sbjct 611 CGTGACTTCTTTGCTGAC-AA-AGAACGCCTATCCCGAGTGTC-CTCGAAAGATATCGCT 667
Query 719 ATTCAGTGTTGGTGGAGATGGTTATAGTGTTCAGGGTTTCATCCACTGTGCTGAAGTTTT 778
||| |||||||| |||||||||||||| || || ||||||||||| ||||| ||||| ||
Sbjct 668 ATTTAGTGTTGGCGGAGATGGTTATAGCGTACAAGGTTTCATCCAATGTGCAGAAGTCTT 727
Query 779 GCCTTCTAATG-TCCCG-GCAAATTATCACTACACAAAGGACCCACCTTTA-TGGTTATC 835
||| ||| || || || | | |||| || | |||||||||||| || || |||||
Sbjct 728 ACCTGCTAGTGATCACGTGGAGC--ATCATTATATGAAGGACCCACCTCTAATG-TTATC 784
Query 836 TGTTGATAAGCCATC-TACATCTGGAATTGGATTAGATAAA-GATGGTGTTTGG-ATT-A 891
||| |||| |||| | |||| || || ||||||| | | |||||||||| | |
Sbjct 785 TGTCAATAAATCATCCT-CATCGGGGATCAAATTAGATGATTG-TGGTGTTTGGCAGGCA 842
Query 892 TCGTTAGC--GGAACATTTTGTTCCTTGGATGTTGTTTTAACCAATGCTATTGGACAGCC 949
|| || || ||| || || ||||||||||||| ||||| ||||||| ||||| |||||
Sbjct 843 TC-TT-GCAAGGAG-ATGTT-TTCCTTGGATGTTCTTTTATCCAATGCCATTGGCCAGCC 898
Query 950 TGTGCACAAGGATGTGAAGGTTGTGGCTTCTCTACTGTATGCTGATAGTGGGATGCCAGT 1009
|||||||||||||||| ||||||| || || ||||||||||| |||| | || |
Sbjct 899 TGTGCACAAGGATGTGGAGGTTGTTGCATCACTACTGTATGCCGATACACT--T-CCGGA 955
Query 1010 TGAGAAGATGAGTGACTCGGAGGCTCCCCTTTTGGTAAGCTATGAAGGAGTTGAATTCTC 1069
| |||||| |||| | |||||||| |||||| |||| ||||||||||| |||||||
Sbjct 956 GGCCAAGATGGGTGAAGCTGAGGCTCCTCTTTTGATAAGAGATGAAGGAGTTCAATTCTC 1015
Query 1070 -TGCTGAAGATA-AGCC-ATGCAA-CTTATTGAACGGATG-TGCTTC-TTTCAAGCTCAA 1123
| |||| |||| | || || ||| || ||| || ||| | | | || ||| ||||| ||
Sbjct 1016 AT-CTGATGATAGA-CCGAT-CAAACT-ATTAAATGGACGCT-CATCCTTT-AAGCTAAA 1069
Query 1124 -ATTATCTCAGCTTTCTTCCAAGAGTGATAAGAGATTGTTCTGTG-TCAAATTCGAAATA 1181
|| ||||||||||| ||||| |||||| | ||||||||||| | | ||||| | ||||
Sbjct 1070 GATC-TCTCAGCTTTCCTCCAATAGTGATGACAGATTGTTCTG-GATTAAATTTGGAATA 1127
Query 1182 CCAGAA-G-TGAAGGCCTATTATCCTTTCCTTGAAACTGTTACCAA-CCAAATCCGTTGC 1238
| | || | | ||| |||||||||||||| || ||||| |||| |||| ||||||||
Sbjct 1128 CGA-AATGCTAAAG----ATTATCCTTTCCTTCAAGCTGTTTCCAATCCAA-TCCGTTGC 1181
Query 1239 ATTTCG 1244
||||||
Sbjct 1182 ATTTCG 1187
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116013459495
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5