BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494049
Length=1561
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase 2 ... 2388 0.0
AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase 1 ... 955 0.0
> AT1G17050.1 | Symbols: SPS2 | solanesyl diphosphate synthase
2 | chr1:5829080-5831343 FORWARD LENGTH=1591
Length=1591
Score = 2388 bits (1293), Expect = 0.0
Identities = 1479/1565 (95%), Gaps = 28/1565 (2%)
Strand=Plus/Plus
Query 1 ttttttattttttATATTTCCGAAAATTTTCCATACACACATCCAA--TCTCGCTCGTCA 58
||||||||||||||| |||| |||||||| ||||||||||| |||| |||| |||||||
Sbjct 1 TTTTTTATTTTTTATTTTTCTGAAAATTTGCCATACACACACCCAATCTCTCTCTCGTCA 60
Query 59 G-C--------ACAAA-TTAACATTGGACTCTCAGTTTCCGAAGATTCTTCCCTTTGGAC 108
| | | ||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 GCCAAAAAGAAAAAAACTTAACATTGGACTCTCAGTTTCCGAAGATTCTTCTCTTTGGAC 120
Query 109 TCTTAGTTTCCGAAACTTATTA--A-CCGTCttttttttggtttttGGGTTTGCATAAAA 165
||| |||||| ||||||||||| | ||||| ||||||||| ||||||||||| |||||
Sbjct 121 TCTCAGTTTCTGAAACTTATTATTAGCCGTC-TTTTTTTGG--TTTGGGTTTGCCTAAAA 177
Query 166 GTTGTCGTCACTTGTGGATTTT-GTCTGAGAAATGATGATGTCATGTCGGAATATAGACT 224
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 GTTGTCGTCACTTGTGGATTTTGGTCTGAGAAATGATGATGTCATGTCGGAATATAGACT 237
Query 225 TGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGT 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGGGTACGAGTGTTCTTGATCATTCTTGTAGCTCTTCTTCAACAAGTCGTCGATTCTTGT 297
Query 285 TTGGGAATTGTTCCAAGAATGTTTGTATGATTGGTGGCAGAAGCTGTGCTGGAAATTTGG 344
|||| |||| ||| |||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 298 TTGGCAATTCTTCGAAGACCGTTTGTATGATTGGTGGCAGAAGCTGTGTTGGAAATTTGG 357
Query 345 TCTTTCTCCGGCGAGATTTTGG-TACTTGTAGAGCGGTTCCGGCTAAATCCAAGGAGAAT 403
| |||||||||||||| ||||| |||||| ||||| ||||||||||||||||||||||||
Sbjct 358 TATTTCTCCGGCGAGA-TTTGGCTACTTGCAGAGCTGTTCCGGCTAAATCCAAGGAGAAT 416
Query 404 TCTCTGGTCAATGGTATTGGTCAAGATAAAACAGTGATGCTCAATCTGAGGCAAGAGTCA 463
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 417 TCTCTGGTCAACGGTATTGGTCAAGATCAAACAGTGATGCTCAATCTGAGGCAAGAGTCA 476
Query 464 CCAAAGCCGATATCTTTGGAAAATCTGTTTGAGGTAGTAGCTGATGATTTGCAGAGGTTG 523
| |||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 477 CGAAAGCCAATATCTTTGGAAACTCTGTTTGAGGTCGTAGCTGATGATTTGCAGAGGTTG 536
Query 524 AACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAG 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 AACGACAATCTTTTATCGATTGTTGGTGCAGAAAATCCGGTTTTGATATCTGCTGCTGAG 596
Query 584 CAAATCTTCAGTGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA 643
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CAAATCTTCAGCGCTGGTGGCAAGAGGATGAGACCGGGTTTGGTATTCCTTGTATCACGA 656
Query 644 GCCACTGCGGAATTAGCTGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAG 703
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 GCCACTGCGGAATTAGCAGGCTTAAAGGAACTTACAGTAGAACATCGGCGTTTAGGTGAG 716
Query 704 ATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATCATTGAGATGATTCACACCGCAAGTTTGATACACGATGATGTGTTAGACGAAAGTGAT 776
Query 764 ATGCGAAGAGGAAAAGAAACGGTTCACGAGCTTTTCGGAACAAGAGTAGCTGTATTAGCT 823
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 777 ATGCGAAGAGGAAGGGAAACGGTTCACGAGCTATTCGGAACAAGAGTAGCTGTATTAGCT 836
Query 824 GGAGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTCCAAGTC 883
|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 837 GGGGATTTCATGTTTGCTCAAGCATCATGGTACTTAGCAAATCTCGAAAACCTTGAAGTC 896
Query 884 ATTAAGCTCATAAGTCAGGTAATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCA 943
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 ATTAAGCTCATAAGTCAGGTGATCAAAGATTTTGCAAGCGGTGAGATAAAGCAAGCATCG 956
Query 944 AGTTTATTCGATTGTGATGTCGAGCTTGATGACTACTTGCTAAAGAGTTACTACAAGACA 1003
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 957 AGTTTATTCGATTGTGATGTCAAGCTTGATGACTACATGCTAAAGAGTTACTACAAGACA 1016
Query 1004 GCTTCATTAGTAGCTGCAAGCACCAAAGGAGCTGCAATTTTCAGTAAAGTCGAAAGCGAG 1063
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1017 GCTTCATTAGTAGCTGCAAGCACCAAAGGAGCAGCAATTTTCAGTAAAGTCGAAAGCAAG 1076
Query 1064 GTCGCAGAGCAAATGTATCAGTTCGGAAAGAATCTCGGTTTATCTTTTCAAGTAGTTGAT 1123
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1077 GTCGCAGAGCAAATGTATCAGTTCGGGAAGAATCTCGGTTTATCTTTTCAAGTAGTTGAT 1136
Query 1124 GACATTCTGGACTTCACTCAATCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTA 1183
|||||||||||||||||||| ||||||||||||||||| || ||||||||||||||| ||
Sbjct 1137 GACATTCTGGACTTCACTCAGTCCACAGAGCAGTTAGGTAAGCCTGCAGCTAATGACCTA 1196
Query 1184 GCCAAAGGTAACATAACAGCGCCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGA 1243
||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1197 GCCAAAGGTAACATAACGGCGCCAGTGATCTTCGCGCTAGAGAATGAGCCAAGGCTAAGA 1256
Query 1244 GAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTT 1303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1257 GAGATCATTGAGTCTGAGTTTTGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTT 1316
Query 1304 AGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTGGCTAAGGAGAAAGGTGAGCTTGCG 1363
||||||||||||||||||||||||||||||||||| || |||||||||| ||| ||||||
Sbjct 1317 AGAAATCGCGGTGGGATCAAGAAAGCTCAAGAATTAGCAAAGGAGAAAGCTGAACTTGCG 1376
Query 1364 TTAAAGAATCTGAATTGTCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTG 1423
||||||||| ||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1377 TTAAAGAATTTGAATTGTCTTCCTAGGAGTGGTTTCAGATCGGCTCTTGAGGATATGGTA 1436
Query 1424 ATGTTTAATCTTGAAAGGATTGATTAGCTTCAAAGGGTATTTGGCAGAGGAAACTGTAAC 1483
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1437 ATGTTTAATCTTGAAAGGATTGATTAGTTTCAAAGGGTATTTGGCAGAGGAAACTGTAAC 1496
Query 1484 A-C--TCTTTACTTGTTTCAAA-CTTCAAACACAGAttttttttt--ACTGTATGTCACA 1537
| | |||||||||||| |||| |||||||||||||||||||||| ||||||||||| |
Sbjct 1497 AACACTCTTTACTTGTT-CAAAACTTCAAACACAGATTTTTTTTTTTACTGTATGTCATA 1555
Query 1538 AAGGA 1542
| |||
Sbjct 1556 ATGGA 1560
> AT1G78510.1 | Symbols: SPS1 | solanesyl diphosphate synthase
1 | chr1:29535285-29537417 REVERSE LENGTH=1600
Length=1600
Score = 955 bits (517), Expect = 0.0
Identities = 906/1093 (83%), Gaps = 30/1093 (3%)
Strand=Plus/Plus
Query 376 AGCGGTTCCGGCTAAATCCAAGGAGAAT-TCTCTGGTCAATGGTATTGGTCAAGATAAAA 434
|||||| || | ||||| |||||| || ||| || ||||||||||||||||| | |||
Sbjct 401 AGCGGTGCCAACGAAATCAAAGGAG-ATCTCTTTGCTCAATGGTATTGGTCAATCTCAAA 459
Query 435 CAGTGATG-CTCAATCTGAGGCAAGAGTCACCAA-AGCCGATATCTTTGGAAAATCTGTT 492
|||||| | | || ||| ||||||||| || |||| || || |||| | ||||||
Sbjct 460 CAGTGA-GTTTTGATTTGAAACAAGAGTCA-AAACAGCCTATTTCGTTGGTGACTCTGTT 517
Query 493 TGAGGTAGTAGCTGATGATTTGCAGAGGTTGAACGACAATCTTTTATCGATTGTTGGTGC 552
|||| ||||||||| |||| |||||| ||||| ||||||||||||||||||||||||||
Sbjct 518 TGAGCTAGTAGCTGTTGATCTGCAGACTTTGAATGACAATCTTTTATCGATTGTTGGTGC 577
Query 553 AGAAAATCCGGTTTTGATATCTGCTGCTGAGCAAATCTTCAGTGCTGGTGGCAAGAGGAT 612
||||||||||||||||||||||| |||||||| || ||| | |||||||| || || ||
Sbjct 578 GGAAAATCCGGTTTTGATATCTGCGGCTGAGCAGATTTTCGGAGCTGGTGGTAAAAGAAT 637
Query 613 GAGACCGGGTTTGGTATTCCTTGTATCACGA-GCCACTGCGGAATTAGCTGGCTTAAAGG 671
||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||
Sbjct 638 GAGACCGGGTTTGGTATTCCTTGTATCAC-ATGCCACGGCGGAATTAGCAGGCCTAAAGG 696
Query 672 AACTTACAGTAGAACATCGGCGTTTAGG-TGAGATCATTGAGATGATTCACACCGCAAGT 730
|||| ||| |||||| |||||||| || ||||||||| |||||||| ||||| |||||
Sbjct 697 AACTAACAACAGAACACCGGCGTTT-GGCTGAGATCATCGAGATGATACACACTGCAAGC 755
Query 731 TTGATACACGATGATGTGTTAGACGAAAGTGATATGCGAAGAGGAAAAGAAACGGTTCAC 790
||||||||||| |||||||||||||| ||||| |||||||||||||| ||||| |||||
Sbjct 756 TTGATACACGACGATGTGTTAGACGAGAGTGACATGCGAAGAGGAAAGGAAACAGTTCAT 815
Query 791 GAGCTTTTCGGAACAAGAGTAGCTGTATTAGCTGGAGATTTCATGTTTGCTCAAGCATCA 850
||||||||||| ||||||||||| || |||||||||||||||||||||||||||| |||
Sbjct 816 GAGCTTTTCGGCACAAGAGTAGCGGTGCTAGCTGGAGATTTCATGTTTGCTCAAGCGTCA 875
Query 851 TGGTACTTAGCAAATCTCGAAAACCTCCAAGTCATTAAGCTCATAAGTCAGGTAATCAAA 910
|||||||||||||||||||| || || |||| ||||||||||| |||||||| ||||||
Sbjct 876 TGGTACTTAGCAAATCTCGAGAATCTTGAAGTTATTAAGCTCATCAGTCAGGTGATCAAA 935
Query 911 GATTTTGCAAGCGGTGAGATAAAGCAAGCATCAAGTTTATTCGATTGTGATGTCGAGCTT 970
|| ||||||||||| ||||||||||| || || || ||||| || || || | ||||
Sbjct 936 GACTTTGCAAGCGGAGAGATAAAGCAGGCGTCCAGCTTATTTGACTGCGACACCAAGCTC 995
Query 971 GATGACTACTTGCT-AAAGAGTTACTACAAGACAGCTTCATTAGTAGCTGCAAGCACCAA 1029
|| || ||||| || ||| |||| |||||||||||| || ||||| ||||| ||||||||
Sbjct 996 GACGAGTACTTACTCAAA-AGTTTCTACAAGACAGCCTCTTTAGTGGCTGCGAGCACCAA 1054
Query 1030 AGGAGCTGCAATTTTCAGTAAAGTCGAAAGC--GAGGTCG-CAGAGCAAATGTATC-AGT 1085
||||||||| |||||||| | ||| || || || || | |||| |||||||| | |||
Sbjct 1055 AGGAGCTGCCATTTTCAGCAGAGTTGA--GCCTGATGT-GACAGAACAAATGTA-CGAGT 1110
Query 1086 TCGGAAAGAATCTCGGTTTATCTTTTCA-AGTAGTTGATGACATTCTGGACTTCACTCAA 1144
| || |||||||||||| | ||||| || | |||||||||| ||| |||| ||||||||
Sbjct 1111 TTGGGAAGAATCTCGGTCTCTCTTTCCAGA-TAGTTGATGATATTTTGGATTTCACTCAG 1169
Query 1145 TCCACAGAGCAGTTAGGGAAACCTGCAGCTAATGACTTAGCCAAAGGTAACATAACAGCG 1204
|| ||||||||| | ||||| || |||| | ||| || || ||||||||| |||||||
Sbjct 1170 TCGACAGAGCAGCTCGGGAAGCCAGCAGGGAGTGATTTGGCTAAAGGTAACTTAACAGCA 1229
Query 1205 CCAGTGATCTTCGCACTAGAGAATGAGCCGAGGCTAAGAGAGATCATTGAGTCTGAGTTT 1264
|| ||||| ||||| || |||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 1230 CCTGTGATTTTCGCTCTGGAGAGGGAGCCAAGGCTAAGAGAGATCATTGAGTCAGAGTTT 1289
Query 1265 TGTGAGCCTGGATCGCTTGAAGAAGCGATTGAAATAGTTAGAAATCGCGGTGGGATCAAG 1324
|||||| | || || || ||||||||||||||| || | ||| | || ||||| |||
Sbjct 1290 TGTGAGGCGGGTTCTCTGGAAGAAGCGATTGAAGCGGTGACAAAAGGTGGGGGGATTAAG 1349
Query 1325 AAAGCTCAAGAATTGGCTAAGGAGAAAGGTGA-G-CTTGCGT-TAAAGAATCTGA-ATTG 1380
| ||| ||||||||||||| |||||||| ||| | | || | |||||||||| | | ||
Sbjct 1350 AGAGCACAAGAATTGGCTAGGGAGAAAGCTGATGAC--GC-TATAAAGAATCT-ACAGTG 1405
Query 1381 TCTTCCGAGAAGTGGTTTCAGATCGGCTCTTGAGGATATGGTGATGTTTAATCTTGAAAG 1440
||| || ||||||| ||||| |||||||| || ||||||||| ||| ||| || |||||
Sbjct 1406 TCTACCTCGAAGTGGCTTCAGGTCGGCTCTAGAAGATATGGTGTTGTATAACCTCGAAAG 1465
Query 1441 GATTGATTAGCTT 1453
||||||||||||
Sbjct 1466 AATTGATTAGCTT 1478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77057836575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5