BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494050
Length=1791
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17060.1 | Symbols: CYP72C1, SOB7 | cytochrome p450 72c1 | c... 2852 0.0
> AT1G17060.1 | Symbols: CYP72C1, SOB7 | cytochrome p450 72c1 |
chr1:5832097-5835456 REVERSE LENGTH=1817
Length=1817
Score = 2852 bits (1544), Expect = 0.0
Identities = 1717/1799 (95%), Gaps = 18/1799 (1%)
Strand=Plus/Plus
Query 1 TTTTATCACATTTCTTTTCTACAGTAtttttttttttttttCTATTCACGCATATATATA 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 19 TTTTATCACATTTCTTTTCTACAGTA---------TTTTCTCTATTCACGCATATATATA 69
Query 61 GATATACAGCTGCCTCCAACATATATAGTCAACTGATGAAATTATAAGCATCATCATTAT 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GATATCCAGCTGCCTCCAACATATATAGTCAACTGATGAAATTATAAGCATCATCATTAT 129
Query 121 AGTTTTGTCTCCtttttttCTT-TTC----C-TTTACTTTCTAGCTCCTCCCTTCTTCAT 174
|||||||||||||||||||||| ||| | ||| |||||||||| ||| |||||||||
Sbjct 130 AGTTTTGTCTCCTTTTTTTCTTCTTCTTTTCTTTTTCTTTCTAGCTACTCTCTTCTTCAT 189
Query 175 AGATAGATCAAGATGATGGAGATTAATATAGTAAGAAAAGTGTTCTTGATCGGATTCTTG 234
|| |||||||||||| | ||||| | || ||||||||||||||||||||||||||||||
Sbjct 190 AGCTAGATCAAGATGTTAGAGATCATTACGGTAAGAAAAGTGTTCTTGATCGGATTCTTG 249
Query 235 ATCTTGATTCTGAATTGGGTATGGAGAGCTGTGAATTGGGTTTGGTTAAGGCCAAAGAGA 294
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 ATCTTGATACTGAATTGGGTATGGAGAGCTGTGAATTGGGTTTGGTTAAGGCCAAAGAGA 309
Query 295 CTAGAGAAATATCTGAAGAAACAAGGATTTTCTGGGAATTCTTATAGGATTTTGATGGGA 354
|| |||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||
Sbjct 310 CTGGAGAAATATCTGAAGAAACAAGGATTCTCTGGGAATTCTTATAGAATTTTAATGGGA 369
Query 355 GATATGAGAGAGAGTAATCAGATGGATCAAGTTGCTCACTCTCTTCCTCTTCCTCTCGAC 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 GATATGAGAGAGAGTAATCAGATGGATCAAGTTGCTCACTCTCTTCCTCTTCCTCTCGAC 429
Query 415 GCCGATTTTCTCCCTCGCATGATGCCTTTTCTCCACCACACTGTTCTAAAACATGGGAAG 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 GCCGATTTTCTCCCTCGCATGATGCCTTTTCTCCACCACACTGTTCTAAAACATGGGAAG 489
Query 475 AAGTGTTTCACATGGTACGGACCGTACCCGAACGTGATAGTAATGGATCCAGAGACACTA 534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 490 AAGTGTTTCACATGGTACGGACCGTACCCGAACGTGATAGTAATGGATCCAGAGACACTC 549
Query 535 CGAGAGATTATGTCAAAACACGAACTCTTTCCGAAACCAAAGATTGGGTCACATAATCAT 594
|||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 550 CGAGAGATTATGTCAAAACACGAACTCTTTCCAAAACCAAAGATCGGGTCACATAATCAT 609
Query 595 GTTTTTCTCAGTGGTCTTCTCAATCACGAAGGTCCTAAATGGTCCAAGCATCGAAGCATT 654
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 GTTTTCCTAAGTGGTCTTCTCAATCACGAAGGTCCTAAATGGTCCAAGCATCGAAGCATT 669
Query 655 CTTAATCCTGCTTTTCGTATCGATAATTTGAAGAGCATACTACCAGCATTCAACTCGAGT 714
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 670 CTTAATCCTGCTTTTCGTATTGATAATTTGAAGAGCATACTACCAGCATTTAACTCGAGT 729
Query 715 TGCAAAGAGATGTTAGAAGAATGGGAGAAATTAGCTTCAGCAAAAGGAACAGTGGAACTT 774
|||||||| ||||||||||||||||||| |||||| ||||||||||||||| ||||||||
Sbjct 730 TGCAAAGAAATGTTAGAAGAATGGGAGAGATTAGCCTCAGCAAAAGGAACAATGGAACTT 789
Query 775 GATTCATGGACTCACTGTCATGACTTAACCAGAAACATGCTTGCTCGTGCTTCTTTTGGT 834
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 GATTCATGGACTCACTGTCATGACTTAACCAGAAACATGCTTGCTCGTGCTTCTTTTGGT 849
Query 835 GATTCCTACAAAGATGGTATCAAGATCTTCGAAATCCAACAAGAGCAGATCGATCTTGGT 894
|||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 850 GATTCCTACAAAGATGGTATCAAGATCTTCGAAATCCAACAAGAACAGATTGATCTTGGT 909
Query 895 CTCCTTGCTATTCGAGCCGTCTACATTCCTGGATCAAAATTTTTGCCAACAAAGTTCAAC 954
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 910 CTCCTTGCTATTCGAGCCGTCTACATTCCTGGCTCAAAGTTTTTGCCAACAAAGTTCAAC 969
Query 955 AGGAGGTTGAGAGAAACCGAAAGGGACATGAGGGCTATGTTTAAAGCTATGATTGAGACT 1014
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 970 AGGAGGTTGAGAGAAACCGAAAGGGACATGAGGGCTATGTTTAAAGCGATGATTGAGACA 1029
Query 1015 AAAGAGGAGGAGATAAAAAGAGGAAGAGCTGGTCAAAATGTCACTTCTTCATTGTTTGTT 1074
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1030 AAAGAGGAGGAGATAAAAAGAGGAAGAGCTGGTCAAAATGTGACTTCTTCATTGTTTGTT 1089
Query 1075 TGGACACTTGTTGCTCTAAGCCAACATCAAGATTGGCAAAACAAAGCAAGAGACGAGGTT 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1090 TGGACACTTGTTGCTCTAAGCCAACATCAAGATTGGCAAAACAAAGCAAGAGACGAGATT 1149
Query 1135 TCTCAGGCCTTCGGTAACAACGAGCCAGATTTCGAAGGGTTAAGCCACCTGAAAGTTGTA 1194
||||||||||||||||||||||| || |||||||||||| |||||||||||||||| |||
Sbjct 1150 TCTCAGGCCTTCGGTAACAACGAACCCGATTTCGAAGGGCTAAGCCACCTGAAAGTCGTA 1209
Query 1195 ACAATGATCCTCCATGAAGTTCTAAGGCTCTATTCACCAGCTTACTTCACATGTCGGATA 1254
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 1210 ACAATGATCCTCCATGAAGTTCTACGACTCTATTCACCAGCTTACTTCACATGTCGGATA 1269
Query 1255 ACTAAACAAGAAGTGAAGTTAGAGAGATTCTCTTTACCCGAAGGAGTTGTGGTCACAATA 1314
|||||||||||||||||| ||||||||||||||||||| ||||||||||| || ||||||
Sbjct 1270 ACTAAACAAGAAGTGAAGCTAGAGAGATTCTCTTTACCTGAAGGAGTTGTAGTAACAATA 1329
Query 1315 CCAATGCTCTTGGTGCACCATGATCCTGACCTTTGGGGAGACGATGTGAAACAGTTTAAG 1374
|||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||
Sbjct 1330 CCAATGCTCTTGGTGCACCATGATTCTGATCTTTGGGGAGACGATGTGAAAGAGTTTAAG 1389
Query 1375 CCCGAGAGATTCGTTAATGGCGTGGCGGGTGCAACCAAAGGAAGACTCTCCTTCTTGCCA 1434
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1390 CCCGAGAGATTCGCCAATGGCGTGGCGGGTGCAACCAAAGGAAGACTCTCCTTCTTGCCA 1449
Query 1435 TTTAGCTCGGGCCCTCGGACTTGTATCGGTCAAAACTTTTCCATGTTGCAAGCTAAACTC 1494
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1450 TTTAGCTCGGGCCCTCGGACTTGTATCGGTCAGAACTTTTCGATGTTGCAAGCTAAACTC 1509
Query 1495 TTCTTGGCAATGGTACTTCAAAGGTTCAGTGTAGAGCTCTCTCCATCGTATACTCATGCT 1554
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1510 TTCTTGGCAATGGTACTTCAAAGGTTCAGTGTTGAACTCTCTCCATCGTATACTCATGCT 1569
Query 1555 CCTTTCCCAGCTGCAACTACATTTCCACAACATGGAGCTCATTTGATCATCCGAAAAGTT 1614
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1570 CCTTTCCCAGCTGCAACTACATTTCCACAACATGGAGCTCATTTGATCATCCGAAAACTG 1629
Query 1615 TAGGAGGTAGAAGAA-GAAGAAAAAA-TGTAAAGGTGCTTCCTTTCTTTTTTGTTCATCA 1672
||||||||||||||| || ||||||| |||||||||||||||||| ||||||||||||||
Sbjct 1630 TAGGAGGTAGAAGAATGAGGAAAAAAATGTAAAGGTGCTTCCTTT-TTTTTTGTTCATCA 1688
Query 1673 ACAAAACAGAACCTTGAAGGTGTCTAGTGGTAAATGCAGTTTGAATCCTGTCAAGAAATC 1732
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1689 ACAAAACAGAACCTTGAAGGTGTGTAGTGGTAAATGCAGTTTGAATCCGGTCAAGAAATC 1748
Query 1733 TTATTTGGGTGTTTTTGTATATAAGAAACAGATTCAAATCTATAAATTTCATAAGATTT 1791
||||||||||||||||||||||| |||||| ||| ||||||| ||||||||||||||||
Sbjct 1749 TTATTTGGGTGTTTTTGTATATATGAAACAAATTAAAATCTAGAAATTTCATAAGATTT 1807
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88603961925
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5