BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494051
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39360.1 | Symbols: EDL2 | EID1-like 2 | chr5:15752992-15754... 2039 0.0
> AT5G39360.1 | Symbols: EDL2 | EID1-like 2 | chr5:15752992-15754677
REVERSE LENGTH=1322
Length=1322
Score = 2039 bits (1104), Expect = 0.0
Identities = 1254/1325 (95%), Gaps = 15/1325 (1%)
Strand=Plus/Plus
Query 1 AAGCAGATTTGCTTCTTCTCGATTCTTTGCAATTTGCATGCATTGCTCATC--AAAAATT 58
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 AAGCAGATTTGCTTCTTCTCGATTCTTTGCAATTTGCATGCATTGCTCATCAAAAAAATT 60
Query 59 CCTTTCTGGGTTTTGTTGGAAATTAGCTGTTTTACTTGAAATGTTGAAACTTTACTTTAT 118
||||||||| |||||||||||| ||||||| | |||| ||||||||||||||| |||| |
Sbjct 61 CCTTTCTGGCTTTTGTTGGAAAATAGCTGTATAACTTCAAATGTTGAAACTTTGCTTT-T 119
Query 119 -TTCTTCttttttttttGGTCAAATTTTGTGTTCTCTCTAGATCAAAACCCTAA-T-TCT 175
|||||| || | ||||||||||||||||||||||||||||| ||||||||||| | |||
Sbjct 120 CTTCTTC-TTCTCTTTTGGTCAAATTTTGTGTTCTCTCTAGAGCAAAACCCTAATTCTCT 178
Query 176 CAATTCTACTCAAAGTTCCTATTTTTATAG-TTCTTTGAGGAAGAGAAAGA-TTGTGTTT 233
|||||||||||||| || ||| | | | | ||| ||||| |||| ||||| ||||| ||
Sbjct 179 CAATTCTACTCAAAATTAATATCTCT-T-GCTTCCTTGAGAAAGATAAAGATTTGTG-TT 235
Query 234 TAC-AAGGTTGAGGAAATGATAATAGCAAAGCAATACCGTTGCATTCACTCGGCGACTTG 292
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 236 TACTAAGGTTGAGGAAATGATAATAGCAAAGCAATATCGTTGCATTCACTCGGCGACTTG 295
Query 293 TCATTGCACGAAAGGACATCTTAGCGAAGAAGTATTGTTTCTTATGGTTCAGCATCTAAA 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TCATTGCACGAAAGGACATCTTAGCGAAGAAGTATTGTTTCTTATGGTTCAGCATCTAAA 355
Query 353 CTGGAACCCTAATGTGATTGCGACTCTATCTTGTGTTTGTAAATGGTTTGATGATCTCGC 412
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 356 CTGGAACCCTAATGTGATTGCCACTCTATCTTGTGTTTGTAAATGGTTTGATGATCTCGC 415
Query 413 TAAGCGGTTATTGTGGAAAGAATTCTGCAGAGCTAGAGCACCTAAGATGATGAGTGACCT 472
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 416 TAAGCGGTTATTGTGGAAAGAATTCTGTAGAGCTAGAGCGCCTAAGATGATGAGTGACCT 475
Query 473 TCAATCTAGTGGTAGCCATAGTGTTGATGGGAGTTGGAGAGCACTTGGGAAACTTTTGAT 532
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 476 TCAATCTAGTGGTAGCCATAGTGTTGATGGGAGTTGGAGAGCACTAGGGAAACTTTTGAT 535
Query 533 TTACTGCTCTGGTTCAAGCAAAGGTGGACTCTTTAATGATGTTCAAATCTCTGGTCATTT 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 TTACTGCTCTGGTTCAAGCAAAGGTGGACTCTTTAATGATGTTCAAATCTCTGGTCATTT 595
Query 593 TGTTCACAGAACCCGATTCTCTAGAACATCAGGAAGGAGCTTTCTTCCTCCACAATGTCG 652
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 596 TGTTCACAGAACCCGCTTCTCTAGAACATCGGGAAGGAGCTTTCTTCCTCCACAATGTCG 655
Query 653 AACTGATGATATTCTCTATGTTTCTGATCCTTGTGAACATCTGGATCAAGGAGAAGATGG 712
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 656 AACTGATGATATTCTCTATGTTTCTGATCCTTGTGAACATTTGGATCAAGGAGAAGATGG 715
Query 713 TGATTTGGGATTCTTCCGTGGGATTTTTAAATCGTTTTCAATGTCAAAGGTGAGGAAGTT 772
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 716 TGATTTGGGATTCTTCCGTGGGATTTTCAAATCGTTTTCTATGTCAAAGGTGAGGAAGTT 775
Query 773 GCTTATCAAGAAAGGGACACCATTTCATCCCACAGAAGTTTGTCCGTATTGCAAAGCAAA 832
|||||| ||||||||||||||||||||||| || ||||||||||||||||||||||| ||
Sbjct 776 GCTTATTAAGAAAGGGACACCATTTCATCCTACGGAAGTTTGTCCGTATTGCAAAGCGAA 835
Query 833 GCTGTGGAGTATGCTTCAGGCGAAAATGATACCACAGAGTGCTAGCTGTAGATTGGGGGC 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 836 GCTGTGGAGTATGCTTCAGGCGAAAATGATACCACAGAGTGCTAGCTGTAGATTGGGGGC 895
Query 893 TTATGAAGATAGCATTGAGTATTATGTTTGCCTCAATGGGCATATGCTAGGAGTTTGTAC 952
|||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 896 TTATGAAGATAGCATTGAGTATTATGTTTGTCTCAATGGGCATATGCTTGGAGTTTGTAC 955
Query 953 ACTCTTACCCTTGTCTGATTCTGAAGGGGC-TACCGAGTTTCAGTGACTATAAATTCCCG 1011
||||||||| |||||||||||||||||||| | ||||||||||||||||||||||| |||
Sbjct 956 ACTCTTACCTTTGTCTGATTCTGAAGGGGCCT-CCGAGTTTCAGTGACTATAAATTGCCG 1014
Query 1012 ACCTTGCGTTTTCCTTTGCAGAAAATGCTTGAAGCTTGGTTATAAGTTATGATGTCGTCT 1071
|||||||||||||| ||||||||||||||||||||||||| | | |||||||||||||||
Sbjct 1015 ACCTTGCGTTTTCCGTTGCAGAAAATGCTTGAAGCTTGGTCAGAGGTTATGATGTCGTCT 1074
Query 1072 CTCTGTTTCTAATGTACCAGTGAATTGTTGTTGCTAGACTTTGGGAATCATCACTTTGCA 1131
|||||||||| |||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1075 CTCTGTTTCTTATGTACTGGTGAATTGTTGCTGCTAAACTTTGGGAATCATCACTTTGCA 1134
Query 1132 AAGAGTTGATGTGAAGTGTATCATAAGCTGAAGTTGTGCAAGGTTCAACGATTTCAGATT 1191
|||||||||||| |||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1135 AAGAGTTGATGTTAAGTGTATCATAAGCTCAAGTTGTGCAAGGTTTGACGATTTCAGATT 1194
Query 1192 CTCAATCTACCATTGGTTTGCATCGACATACCATTTGTTGATTCTGTGCATGTATATGTA 1251
|||||| |||||||||| |||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1195 CTCAATTTACCATTGGTGTGCATCTACAAACCATTTGTTGATTCTGTGCATGTATATGTA 1254
Query 1252 TGAACAACACTTGCAAATTGTAATAGACGCATTTATTTCTGCTACATTTATAATCATTTG 1311
| |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1255 TTAACAACACTTGCAAATTGTAATAGACGCATATATTTCTGCTACATTTATGATCATTTG 1314
Query 1312 ACCCC 1316
| |||
Sbjct 1315 AACCC 1319
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5