BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494053 Length=791 Score E Sequences producing significant alignments: (Bits) Value AT5G39340.1 | Symbols: AHP3, ATHP2 | histidine-containing phosp... 1232 0.0 AT3G29350.1 | Symbols: AHP2 | histidine-containing phosphotrans... 505 3e-142 AT4G04402.1 | Symbols: | two-component phosphorelay mediator, ... 135 5e-31 > AT5G39340.1 | Symbols: AHP3, ATHP2 | histidine-containing phosphotransmitter 3 | chr5:15748851-15750507 FORWARD LENGTH=817 Length=817 Score = 1232 bits (667), Expect = 0.0 Identities = 757/799 (95%), Gaps = 11/799 (1%) Strand=Plus/Plus Query 1 TCTCTTTATTGGGATTGCAATTTCAAACAAACTTTACATCTTCTTCTTCTCTCTGCTTTT 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6 TCTCTTTATTGGGATTGCAATTTCAAACAAACTTTACATCTTCTTCTTCTCTCTGCTTTT 65 Query 61 GCCTT--C-ACGAGTAGAGAGAGCCATGGACACACTCATTGCTCAGTTACAGAGACAATT 117 ||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 66 GCCTTCACGACGAGTAGAGAGAGCCATGGACACACTCATTGCTCAGTTACAGAGACGATT 125 Query 118 TCGTGATTACACCATTTCTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACTGAATT 177 | |||||| ||||||| |||||||||||||||||||||||||||||||||||| ||||| Sbjct 126 TTGTGATTTCACCATTAGTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACAGAATT 185 Query 178 GAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTT 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 186 GAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTT 245 Query 238 TGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCGTTAGATCAGACAGGAAATGT 297 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 246 TGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCTTTAGATCAGACAGGAAATGT 305 Query 298 AGATTTCAAGCTGGTAGGTTCCAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGG 357 ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 306 AGATTTCAAACTGGTAGGTTCTAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGG 365 Query 358 TGCCAAGAGAGTCAAAGGTCTTTGTGTTACACTCAAGGAGTGTTGCGACTCTCAGAACTA 417 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 366 TGCCAAGAGAGTCAAAGGTCTTTGTGTTACCCTCAAGGAGTGTTGCGACTCTCAGAACTA 425 Query 418 TGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAA 477 |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 426 TGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACATTAAAAGCAAA 485 Query 478 GCTTCAAGATTTGTTTAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCA 537 |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 486 GCTTCAAGATCTGTTCAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCA 545 Query 538 GGTGGATATATAAACAATAGACCTATCGCCAACAGAATAGCAAGATGATGATGATCCAGT 597 ||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 546 AGTGGATATATAAACAATAGACCTATCGACAACAGAACAGCAAGATGATGATCATCCAGT 605 Query 598 TGCATTCTTCA-AGCGAGTAATACTTGGATTTGAA-CTTAGaaaaaaaaaaaaaaaaCTC 655 ||||||||||| | |||||| |||| | ||||| ||| |||||| |||||||| ||| Sbjct 606 TGCATTCTTCAGA-CGAGTACTACTCGAATTTGTTGCTTCGAAAAAGAAAAAAAA--CTC 662 Query 656 TTTAGAATGTGTGGAAAAGAGAGGTGATTGTTGTTCATAGATCAGTACTATGTATCTTTT 715 || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 663 TTGAGAATGTGTGGAAAAGAGAGGTGATTGTTGTTCATAGATCAATACTATGTATCTTTT 722 Query 716 GTATCATC-TCT-TGGA-TCTTGATACTGACCTTATCTGAATAGTATGAATTTGCATCTC 772 |||||||| ||| | || ||||| |||||| ||||||||||||||||||||||||||||| Sbjct 723 GTATCATCATCTCTTGAATCTTGGTACTGATCTTATCTGAATAGTATGAATTTGCATCTC 782 Query 773 ATAAGACCATATGAAGAAG 791 ||||||||||||||| ||| Sbjct 783 ATAAGACCATATGAACAAG 801 > AT3G29350.1 | Symbols: AHP2 | histidine-containing phosphotransmitter 2 | chr3:11264147-11265532 REVERSE LENGTH=827 Length=827 Score = 505 bits (273), Expect = 3e-142 Identities = 411/476 (86%), Gaps = 15/476 (3%) Strand=Plus/Plus Query 82 CATGGACACACTCATTGCTCAG-TTACAGAGACAATTTCGTGATTACACCATTTCTCTCT 140 ||||||| | |||||||||||| || |||||||||||||||||||||||||||||||||| Sbjct 124 CATGGACGCTCTCATTGCTCAGCTT-CAGAGACAATTTCGTGATTACACCATTTCTCTCT 182 Query 141 ATCACCAGGGGTTTTTGGATGATCAATTCACTGAATTGAAAAAGCTGCAAGATGAAT-GT 199 | || ||||||||||||||||||||||| ||||| ||||||||||| ||||||| || | Sbjct 183 ACCAACAGGGGTTTTTGGATGATCAATTTACTGAGTTGAAAAAGCTACAAGATG-ATGGA 241 Query 200 AGTCCTGATTTTGTGGCTGAGGTTG-TTACTCTCTTCTTTGAAGACTGTGAGAAGCTTAT 258 ||||||||||||||| |||| | || || | || ||||||||||| |||| ||||||||| Sbjct 242 AGTCCTGATTTTGTGTCTGAAG-TGCTTTCACTTTTCTTTGAAGATTGTGTGAAGCTTAT 300 Query 259 CAGTAATATGGCTAGAGCGTTAGATCA-GACAGGAAATGTAGATTTCAAG-CTGGTAGGT 316 |||||| ||||||||||| || || || |||||||| ||||||||| || | ||||||| Sbjct 301 CAGTAACATGGCTAGAGCTTTGGA-CACGACAGGAACTGTAGATTT-TAGTCAGGTAGGT 358 Query 317 TCCAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGGTGCCAAGAGAGTCAAAGGT 376 | ||||| |||||| | || ||||||||||||||||||||||||||||| |||||| | Sbjct 359 GCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGGTGCCAAGAGGGTCAAAACT 418 Query 377 CTT-TGTGTTACAC-TCAAGGAGTGTTGCGACTCTCAGAACTATGAAGGGTGTGTGAGAT 434 || ||||||| | ||||||| ||||| || || ||||||| |||||||||||||||| Sbjct 419 -TTGTGTGTTA-GCTTCAAGGAATGTTGTGAAGCTAAGAACTACGAAGGGTGTGTGAGAT 476 Query 435 GTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAAGCTTCAAGATTTGTTTA 494 ||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||| | Sbjct 477 GTTTGCAGCAAGTGGATATTGAGTACAAGGCGTTAAAGACAAAGCTTCAAGATATGTTCA 536 Query 495 ATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCAGGTGGATATATAA 550 |||||||| ||||||| | ||||||||||||| | | ||||| |||||||| ||| Sbjct 537 ATCTTGAGAAACAGATCATTCAAGCTGGTGGTATAGTTCCTCAAGTGGATAT-TAA 591 > AT4G04402.1 | Symbols: | two-component phosphorelay mediator, putative | chr4:2164007-2165404 FORWARD LENGTH=504 Length=504 Score = 135 bits (73), Expect = 5e-31 Identities = 106/122 (87%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 429 TGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAAGCTTCAAGATT 488 ||||||||||||||||||||||||||||||| ||||| || | | |||||||||||||| Sbjct 380 TGAGATGTTTGCAGCAAGTGGATATTGAGTATAAGACCTTGACGACAAAGCTTCAAGATA 439 Query 489 TGTTTAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCAGGTGGATATAT 548 |||| ||||||||| |||| || | ||||||||||||||| | ||||| |||||||| | Sbjct 440 TGTTCAATCTTGAGAAACAAATCATTCAAGCTGGTGGTAGAGTTCCTCAAGTGGATAT-T 498 Query 549 AA 550 || Sbjct 499 AA 500 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38479356602 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5