BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494053
Length=791
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39340.1 | Symbols: AHP3, ATHP2 | histidine-containing phosp... 1232 0.0
AT3G29350.1 | Symbols: AHP2 | histidine-containing phosphotrans... 505 3e-142
AT4G04402.1 | Symbols: | two-component phosphorelay mediator, ... 135 5e-31
> AT5G39340.1 | Symbols: AHP3, ATHP2 | histidine-containing phosphotransmitter
3 | chr5:15748851-15750507 FORWARD LENGTH=817
Length=817
Score = 1232 bits (667), Expect = 0.0
Identities = 757/799 (95%), Gaps = 11/799 (1%)
Strand=Plus/Plus
Query 1 TCTCTTTATTGGGATTGCAATTTCAAACAAACTTTACATCTTCTTCTTCTCTCTGCTTTT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 6 TCTCTTTATTGGGATTGCAATTTCAAACAAACTTTACATCTTCTTCTTCTCTCTGCTTTT 65
Query 61 GCCTT--C-ACGAGTAGAGAGAGCCATGGACACACTCATTGCTCAGTTACAGAGACAATT 117
||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 66 GCCTTCACGACGAGTAGAGAGAGCCATGGACACACTCATTGCTCAGTTACAGAGACGATT 125
Query 118 TCGTGATTACACCATTTCTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACTGAATT 177
| |||||| ||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 126 TTGTGATTTCACCATTAGTCTCTATCACCAGGGGTTTTTGGATGATCAATTCACAGAATT 185
Query 178 GAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTT 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GAAAAAGCTGCAAGATGAATGTAGTCCTGATTTTGTGGCTGAGGTTGTTACTCTCTTCTT 245
Query 238 TGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCGTTAGATCAGACAGGAAATGT 297
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 246 TGAAGACTGTGAGAAGCTTATCAGTAATATGGCTAGAGCTTTAGATCAGACAGGAAATGT 305
Query 298 AGATTTCAAGCTGGTAGGTTCCAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGG 357
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 306 AGATTTCAAACTGGTAGGTTCTAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGG 365
Query 358 TGCCAAGAGAGTCAAAGGTCTTTGTGTTACACTCAAGGAGTGTTGCGACTCTCAGAACTA 417
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 366 TGCCAAGAGAGTCAAAGGTCTTTGTGTTACCCTCAAGGAGTGTTGCGACTCTCAGAACTA 425
Query 418 TGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAA 477
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 426 TGAAGGGTGTGTGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACATTAAAAGCAAA 485
Query 478 GCTTCAAGATTTGTTTAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCA 537
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 GCTTCAAGATCTGTTCAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCA 545
Query 538 GGTGGATATATAAACAATAGACCTATCGCCAACAGAATAGCAAGATGATGATGATCCAGT 597
||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 546 AGTGGATATATAAACAATAGACCTATCGACAACAGAACAGCAAGATGATGATCATCCAGT 605
Query 598 TGCATTCTTCA-AGCGAGTAATACTTGGATTTGAA-CTTAGaaaaaaaaaaaaaaaaCTC 655
||||||||||| | |||||| |||| | ||||| ||| |||||| |||||||| |||
Sbjct 606 TGCATTCTTCAGA-CGAGTACTACTCGAATTTGTTGCTTCGAAAAAGAAAAAAAA--CTC 662
Query 656 TTTAGAATGTGTGGAAAAGAGAGGTGATTGTTGTTCATAGATCAGTACTATGTATCTTTT 715
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 663 TTGAGAATGTGTGGAAAAGAGAGGTGATTGTTGTTCATAGATCAATACTATGTATCTTTT 722
Query 716 GTATCATC-TCT-TGGA-TCTTGATACTGACCTTATCTGAATAGTATGAATTTGCATCTC 772
|||||||| ||| | || ||||| |||||| |||||||||||||||||||||||||||||
Sbjct 723 GTATCATCATCTCTTGAATCTTGGTACTGATCTTATCTGAATAGTATGAATTTGCATCTC 782
Query 773 ATAAGACCATATGAAGAAG 791
||||||||||||||| |||
Sbjct 783 ATAAGACCATATGAACAAG 801
> AT3G29350.1 | Symbols: AHP2 | histidine-containing phosphotransmitter
2 | chr3:11264147-11265532 REVERSE LENGTH=827
Length=827
Score = 505 bits (273), Expect = 3e-142
Identities = 411/476 (86%), Gaps = 15/476 (3%)
Strand=Plus/Plus
Query 82 CATGGACACACTCATTGCTCAG-TTACAGAGACAATTTCGTGATTACACCATTTCTCTCT 140
||||||| | |||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 124 CATGGACGCTCTCATTGCTCAGCTT-CAGAGACAATTTCGTGATTACACCATTTCTCTCT 182
Query 141 ATCACCAGGGGTTTTTGGATGATCAATTCACTGAATTGAAAAAGCTGCAAGATGAAT-GT 199
| || ||||||||||||||||||||||| ||||| ||||||||||| ||||||| || |
Sbjct 183 ACCAACAGGGGTTTTTGGATGATCAATTTACTGAGTTGAAAAAGCTACAAGATG-ATGGA 241
Query 200 AGTCCTGATTTTGTGGCTGAGGTTG-TTACTCTCTTCTTTGAAGACTGTGAGAAGCTTAT 258
||||||||||||||| |||| | || || | || ||||||||||| |||| |||||||||
Sbjct 242 AGTCCTGATTTTGTGTCTGAAG-TGCTTTCACTTTTCTTTGAAGATTGTGTGAAGCTTAT 300
Query 259 CAGTAATATGGCTAGAGCGTTAGATCA-GACAGGAAATGTAGATTTCAAG-CTGGTAGGT 316
|||||| ||||||||||| || || || |||||||| ||||||||| || | |||||||
Sbjct 301 CAGTAACATGGCTAGAGCTTTGGA-CACGACAGGAACTGTAGATTT-TAGTCAGGTAGGT 358
Query 317 TCCAGTGTTCATCAACTCAAAGGTAGTAGCTCAAGTGTTGGTGCCAAGAGAGTCAAAGGT 376
| ||||| |||||| | || ||||||||||||||||||||||||||||| |||||| |
Sbjct 359 GCTAGTGTGCATCAATTGAAGGGTAGTAGCTCAAGTGTTGGTGCCAAGAGGGTCAAAACT 418
Query 377 CTT-TGTGTTACAC-TCAAGGAGTGTTGCGACTCTCAGAACTATGAAGGGTGTGTGAGAT 434
|| ||||||| | ||||||| ||||| || || ||||||| ||||||||||||||||
Sbjct 419 -TTGTGTGTTA-GCTTCAAGGAATGTTGTGAAGCTAAGAACTACGAAGGGTGTGTGAGAT 476
Query 435 GTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAAGCTTCAAGATTTGTTTA 494
||||||||||||||||||||||||||||| | |||||| |||||||||||||| |||| |
Sbjct 477 GTTTGCAGCAAGTGGATATTGAGTACAAGGCGTTAAAGACAAAGCTTCAAGATATGTTCA 536
Query 495 ATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCAGGTGGATATATAA 550
|||||||| ||||||| | ||||||||||||| | | ||||| |||||||| |||
Sbjct 537 ATCTTGAGAAACAGATCATTCAAGCTGGTGGTATAGTTCCTCAAGTGGATAT-TAA 591
> AT4G04402.1 | Symbols: | two-component phosphorelay mediator,
putative | chr4:2164007-2165404 FORWARD LENGTH=504
Length=504
Score = 135 bits (73), Expect = 5e-31
Identities = 106/122 (87%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 429 TGAGATGTTTGCAGCAAGTGGATATTGAGTACAAGACTTTAAAGGCAAAGCTTCAAGATT 488
||||||||||||||||||||||||||||||| ||||| || | | ||||||||||||||
Sbjct 380 TGAGATGTTTGCAGCAAGTGGATATTGAGTATAAGACCTTGACGACAAAGCTTCAAGATA 439
Query 489 TGTTTAATCTTGAGCAACAGATTGTCCAAGCTGGTGGTAGAATCCCTCAGGTGGATATAT 548
|||| ||||||||| |||| || | ||||||||||||||| | ||||| |||||||| |
Sbjct 440 TGTTCAATCTTGAGAAACAAATCATTCAAGCTGGTGGTAGAGTTCCTCAAGTGGATAT-T 498
Query 549 AA 550
||
Sbjct 499 AA 500
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38479356602
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5