BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494054
Length=677
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39330.1 | Symbols: | Protein of unknown function (DUF1163)... 712 0.0
> AT5G39330.1 | Symbols: | Protein of unknown function (DUF1163)
| chr5:15746234-15747119 FORWARD LENGTH=780
Length=780
Score = 712 bits (385), Expect = 0.0
Identities = 614/717 (86%), Gaps = 46/717 (6%)
Strand=Plus/Plus
Query 1 AAATGGAAATAGAAGCATTAGTTCCCAAACTCAC--CT-ATTTGCGTCCGTTGACACTAA 57
||||| ||| |||||||||||||||||||||||| || | |||| |||||| |||||||
Sbjct 34 AAATGAAAAAAGAAGCATTAGTTCCCAAACTCACATCTGAATTGCCTCCGTTTACACTAA 93
Query 58 AAGATTATTATGTGCCGTTTTTTCTCGTAATAGTGGTCTTATTGTT-T-T-TCGGttt-t 113
||| | | | ||| ||| |||| |||||||| | ||||| | | ||| ||| |
Sbjct 94 AAG---ACCA--T-CCGAAGTTTGTCGTCTTAGTGGTCATCTTGTTCTGTATCGCTTTCT 147
Query 114 t--ttAC-GT-A-C-GTT--GTGTATGAACAACACAAAGAAGAACAAAATTATGTCCCAA 165
| || | | | | || | |||||||||| | |||||| || |||| ||||||||||
Sbjct 148 TCATTGCTATGACCTTTTGCGGGTATGAACAAGATAAAGAAAAAGAAAACTATGTCCCAA 207
Query 166 ATATTACAATACCTTCTATCGATTTCACGGTCCTTAATATAACCGAGACTCGTCTTAGTG 225
||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 208 ATATTACAATACCTTCTATGGATTTCACGGTCCTTAATATAACCGAGACTCATCTTAGTG 267
Query 226 TAAAATGGGATTTATTGTTAAGGATCCCTAGTGATCTTCCTGGTTTGTATATGTGTCTCA 285
||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 268 TAAAATGGGATTTATTGTTAAGGATCCCTAGAGATCTTCCTGGTTGGTATATGTGTCTCA 327
Query 286 AAGGAAACTTTCAGTTTTCCATAATATACAAAGGTGTTACCATTGCTACTTCATTCATAG 345
||||| | |||||| ||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 328 AAGGAGATTTTCAGCTTTCCATAATATACAGAGGTGTTACCATTGCTACTTCATCCATAG 387
Query 346 AGAG---C--T-T-AT-------T----T---CTGATTAGGGTTTCATCGATTGCTTCTG 384
|||| | | | || | | ||||||||||||||||||||||||||||
Sbjct 388 AGAGTTACAGTCTGATACCACGGTGGGCTCAGCTGATTAGGGTTTCATCGATTGCTTCTG 447
Query 385 AAGGAGATATGGACGGTGTGATTCTGAAAGATATTATGAAGGATATCAAGGAAATAGGTG 444
||||||| ||||| ||||||||| | |||||||||||||||||||||||||||| |||||
Sbjct 448 AAGGAGACATGGAGGGTGTGATTATAAAAGATATTATGAAGGATATCAAGGAAAAAGGTG 507
Query 445 AAATAAGGTTCGGATCGCGATTGCTTCTTCCGGATTGTAGATATGGGACAACTGGAAAGA 504
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 508 AAATAAGGTTCCGATCGCGATTGCTTCTTCCGGATTGTAGATATGGGACAAGTGGAAAGA 567
Query 505 TGAACTATGCATGTGATGTAGCCATGTTACGGTTCGAGCCTGGCTCTCAGAGGAATGCAA 564
|||||||||| ||||||| |||||||||| ||||||||||||||||||| ||||||||||
Sbjct 568 TGAACTATGCGTGTGATGAAGCCATGTTAAGGTTCGAGCCTGGCTCTCAAAGGAATGCAA 627
Query 565 CTTTGTTTGGAAACCACCCTATTTGCCGCTATCTTCGCTAAGTACTTTTCATCAAGAttt 624
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 628 CTTTGTTTGGAGACCACCCTATTTGCCGCTATCTTCGCTAAGTACTTTTCATCAATAGTT 687
Query 625 ttttGTTTAATTTACCAAATGTTGGACATT-T---TTCTTTTGCGCTGTGATATGGA 677
| || |||| ||| |||||| ||||| || | |||||||||| | |||||||||
Sbjct 688 TGTTCTTTAGTTTGTCAAATGATGGACTTTCTAAATTCTTTTGCGTTTTGATATGGA 744
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32752663844
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5