BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494062
Length=935
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39260.1 | Symbols: ATEXPA21, EXP21, ATEXP21, ATHEXP ALPHA 1... 1330 0.0
AT5G39310.1 | Symbols: ATEXPA24, EXP24, ATEXP24, ATHEXP ALPHA 1... 337 1e-91
> AT5G39260.1 | Symbols: ATEXPA21, EXP21, ATEXP21, ATHEXP ALPHA
1.20, EXPA21 | expansin A21 | chr5:15726378-15727458 REVERSE
LENGTH=932
Length=932
Score = 1330 bits (720), Expect = 0.0
Identities = 869/940 (92%), Gaps = 13/940 (1%)
Strand=Plus/Plus
Query 1 AAGCT-AAAGTAAAAACAATATCATTAAAGAGGTATAATAATCATGAAATTGCTAGAAAA 59
||||| ||||| ||||||| ||||| ||||||| ||||||||||||||||||||||||||
Sbjct 1 AAGCTAAAAGT-AAAACAAAATCATCAAAGAGGGATAATAATCATGAAATTGCTAGAAAA 59
Query 60 AATGACATATGTAGAATGTTTTATGATAATAATGGCGACTTGGTTCATGTTCATAAGTTA 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 60 AATGACATATGTAGAATGTTTTATGATAATAATGGCGACATGGTTCATGTTCATAAGTTA 119
Query 120 TGGTCATGGAGCCGATGTAGCCGAACCATCACCTGGAACCAACGGACTCGATACTGCTTG 179
||||||||||| ||||||| | | | ||||||||||||||||||| |||||||||||
Sbjct 120 CAGTCATGGAGCCAATGTAGCTG--C-AGCACCTGGAACCAACGGACTTGATACTGCTTG 176
Query 180 GTATGATGCACGAGCCACATATTATGGTGATATCCATGGTATAGGCACTGAACTAGAGGG 239
||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 177 GTATGATGCGCGAGCCGCATATTATGGTGATATCCATGGTGGAGGCACTGAACTAGAAGG 236
Query 240 AGCTTGTGGATACGGTGATCCAAACAAACATGGATATGGTCTAGCCACAGCGGCATTGAG 299
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct 237 AGCTTGTGGATACGGTGATCTAAACAAACATGGATATGGTCTAGCCACAGCAGCATTGAG 296
Query 300 CACGGCGCTATTCAACAACGGGGCCACATGTGGGGCTTGTTACGAGATCATGTGCGCTCC 359
||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 297 CACGGCGCTCTTCAACAGCGGGGCCTCATGTGGGGCTTGTTACGAGATCATGTGCTCTCC 356
Query 360 TAATCCACAAGGGTGTTTGTCTGGATCCATCAAGATCACAGCAACAAATTTATGTCCACC 419
|||||||||||| |||||||| ||||| |||||||||||||||||| |||||||||||||
Sbjct 357 TAATCCACAAGGATGTTTGTCCGGATCTATCAAGATCACAGCAACAGATTTATGTCCACC 416
Query 420 AG-ATTCCACTTGGTGCAACCTACCAAATAAACACTTTGATCTCTCCTTACCAATGTTCA 478
|| || || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 417 AGGAT-CCGCTTGGTGCTACCTACCAAATAAACACTTTGATCTCTCCTTACCAATGTTCA 475
Query 479 TCAAGATCGCCCAGGTCAAAGCCGGGATCGTCCCGATTAGATATAGACGTGTTCCTTGTG 538
|||||||||| |||||||||||| ||| |||||| ||||||| ||||||||||| ||||
Sbjct 476 TCAAGATCGCTCAGGTCAAAGCCAAGATGGTCCCGGTTAGATACAGACGTGTTCCCTGTG 535
Query 539 CAAAAACCGGTGGTGTCAAGTTTGAAGTTAAAGGAAACCCTAGTTTCCTAACGATCTTAC 598
| |||||||||||||||||||||||||||||||||||||||| | || |||||||||| |
Sbjct 536 CGAAAACCGGTGGTGTCAAGTTTGAAGTTAAAGGAAACCCTAATATCTTAACGATCTTGC 595
Query 599 CGTACAATGTAGGAGGAGCCGGAGATATTAAAGCCGTGTATGTTAAGGGAAGCAAAACCG 658
||||||||||||||||||| |||||||||| |||||||| || |||||||||||||||||
Sbjct 596 CGTACAATGTAGGAGGAGCAGGAGATATTATAGCCGTGTCTGCTAAGGGAAGCAAAACCG 655
Query 659 GGTGGATAGCAATGAGCAGAAACTGGGGACAAAACTGGACCACTAATGTTAATCTAGCCG 718
|||| ||| |||||||||| | ||||||||||| ||||| ||||||||||||||| |||
Sbjct 656 CGTGGGTAGTAATGAGCAGATATTGGGGACAAAATTGGACTACTAATGTTAATCTAACCG 715
Query 719 GTCAGAGTGTATCATTGAGGGTTACAACGAGTGATGAGG-TTACAAAAGATTTTACTGAT 777
|||| ||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||
Sbjct 716 GTCAAAGTGTATCATTAAGGGTTACAACGAGTGATG-GGATTACAAAGGATTTTACTGAT 774
Query 778 GTGATGCCA-CAAAGTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTAAGA 836
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GTGATGCCAGCAA-GTTGGGGATTTGGGCAGACTTTTGATGGAAAGACTAACTTTTAAGA 833
Query 837 AAAATGAAATGAAttttttt-AGTTTTGGCCTACAAGTTATTACTAAAGAGAGATGTATT 895
||||||| |||||||||||| ||||||||| ||||||||| ||||| ||||||||||||
Sbjct 834 AAAATGATATGAATTTTTTTTAGTTTTGGCTTACAAGTTACAACTAA-GAGAGATGTATT 892
Query 896 GGTTGCAATAATTAAAAATAAATGAAATATTGTTTATGAT 935
||||||||||||||||||||||||||||||||||||||||
Sbjct 893 GGTTGCAATAATTAAAAATAAATGAAATATTGTTTATGAT 932
> AT5G39310.1 | Symbols: ATEXPA24, EXP24, ATEXP24, ATHEXP ALPHA
1.19, EXPA24 | expansin A24 | chr5:15739280-15740514 REVERSE
LENGTH=891
Length=891
Score = 337 bits (182), Expect = 1e-91
Identities = 476/613 (78%), Gaps = 40/613 (7%)
Strand=Plus/Plus
Query 193 GCCACATAT-TATGGTGATATCCATGGTATAGGCACTGAACTAGAGGGAGCTTGTGGATA 251
||||||| | || ||||| ||| ||||| || ||| ||| ||||||||||||||||
Sbjct 235 GCCACAT-TCTACGGTGACATCAATGGTGGAGAAACTCAAC---AGGGAGCTTGTGGATA 290
Query 252 CGGTGATCCAAACAAACATGGATATGGTCTAGCCACAGCGGCATTGAGCACGGCGCTATT 311
||||||| | ||||||| ||||||||||||| || || ||| | ||||| || |||||
Sbjct 291 TGGTGATCTACACAAACAAGGATATGGTCTAGAGACCGCAGCACTAAGCACCGCACTATT 350
Query 312 CAACAACGGGGCCACATGTGGGGCTTGTTACGAGATCATGTGCGCTC-CTAATCCACAAG 370
|||||||| | | |||||||||||||||||||||||||||| | | |||||||
Sbjct 351 TAACAACGGCTCAAGGTGTGGGGCTTGTTACGAGATCATGTGCGAACACGC-TCCACAAT 409
Query 371 GGTGTTTGTCTGGATCCATCAAGATCACAGCAACAAATTTATGTCCACCAGATT---CCA 427
|||||||| | || ||||||||||||||||| ||||| || ||||||||||||| |||
Sbjct 410 GGTGTTTGCCAGGTTCCATCAAGATCACAGCTACAAACTTCTGTCCACCAGATTTTACCA 469
Query 428 --C----T-----T-GGTGCAACCTACCA-AATAAACACTTTGATCTCTC-CTTACCAAT 473
| | | ||||||||| ||| || ||||||||||||||||| | ||||||
Sbjct 470 AGCCCAATGACAATTGGTGCAACCCGCCACAA-AAACACTTTGATCTCTCGCA-ACCAAT 527
Query 474 GTTCATCAAGATCGCCCAGGT-CAAAGCCGGGATCGTCCCGATTAGATATAGACGTGTTC 532
|||| |||| || || | | |||||||||| | |||||| ||| || |||||||||||
Sbjct 528 GTTCCTCAAAATAGCTAAA-TACAAAGCCGGGGTTGTCCCGGTTAAATTTAGACGTGTTC 586
Query 533 CTTGTGCAAAAACCGGTGGTGTCAAGTTTGAAGTTAAAGGAAACCCT-AGTTTCCTAACG 591
||||||| |||| ||| ||||||||||||||| | || ||||| ||| | |||| ||| |
Sbjct 587 CTTGTGCGAAAATCGGAGGTGTCAAGTTTGAAATCAAGGGAAATCCTCA-TTTCTTAATG 645
Query 592 ATCTTACCGTACAATGTAGGAGGAGCCGGAGATATTAAAGCCGTGTATGTTAAGGGAAGC 651
|||||||||||||||||||||||||| |||| | ||| || || | ||||||||| |
Sbjct 646 ATCTTACCGTACAATGTAGGAGGAGCTGGAGCTGTTAGGGCTATGCAAATTAAGGGAA-C 704
Query 652 AAA-ACCGGGTGGATAGCAATGA-GCAGAAACTGGGGACAAAACTGGACCACTAATGTTA 709
|| ||| |||||| || |||| | |||| |||||||| | |||| |||| ||||
Sbjct 705 AAGGACCCAGTGGATTGCGATGAAGAAGAAT-TGGGGACAGATTTGGAGCACTGGTGTTG 763
Query 710 ATCTAG-CCGGTCAGA-GTGTATCATTGAGGGTTACAACGAGTGATG-AGGTTACAAAAG 766
| | | |||| || | || |||| || ||| |||| || ||||||| || ||| ||||
Sbjct 764 -TGTTGACCGGACA-ATGTTTATCGTTTAGGCTTACCACAAGTGATGGAG-TTATGAAAG 820
Query 767 ATTTTACTGATGT 779
| |||| ||||||
Sbjct 821 AGTTTATTGATGT 833
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45713073770
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5