BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494063 Length=879 Score E Sequences producing significant alignments: (Bits) Value AT5G39250.1 | Symbols: | F-box family protein | chr5:15724487-... 1118 0.0 > AT5G39250.1 | Symbols: | F-box family protein | chr5:15724487-15725756 FORWARD LENGTH=1031 Length=1031 Score = 1118 bits (605), Expect = 0.0 Identities = 751/819 (92%), Gaps = 19/819 (2%) Strand=Plus/Plus Query 23 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 82 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 135 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 194 Query 83 GCATGTATGTGTGTATGTAGACAGTGGAGAGATATCGCTATTGACGATTTTTATTGGAAA 142 |||||||| |||| || | ||| |||||||||||||| | |||||||| || |||||| Sbjct 195 TCATGTATGGGTGTTTGCAAACAATGGAGAGATATCGCAAGAGACGATTTCTACTGGAAA 254 Query 143 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAAAGGCATAAACCTCCTACTGAAACA 202 |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| Sbjct 255 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAACGGCACAAACCTCCTACTGAAACA 314 Query 203 TATTACAAGATGTATCAAATGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 262 || ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 315 TACTACAAAATGTATCAAACGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 374 Query 263 AGATTGTCGTTTGAAAACTTGGAGTTCTTT-ATCGATATTTGGTCAGAGGAGAAACTTGT 321 |||||||||| |||||||||||||| ||| |||||||||||||| || |||| || || Sbjct 375 CGATTGTCGTTCGAAAACTTGGAGTT-TTTCATCGATATTTGGTCGGAAGAGAGGCTCGT 433 Query 322 TTTCTCGGGGTTAATACTCGGTGTTGCATTGGAAAAGGGGATCAAAACGTTACCGTTAGG 381 |||||||||||||||| ||||||||| |||||||| || ||| |||||||||||||||| Sbjct 434 GTTCTCGGGGTTAATACCCGGTGTTGCGTTGGAAAATGGTATCGAAACGTTACCGTTAGG 493 Query 382 GATCAGTAATGTTCTTAGAACTCACCTTGGTAGACCTGATTATAAGATGGTTGTTCCTGC 441 |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| Sbjct 494 GATCAGTAATGTTCTTAGAACTCATCTTGGTAGACCTGATTACAAGATGGTTGTTCCTGC 553 Query 442 TGAGCCTAGGTTTACTATTCCGTTAAATCAGTCGGTTAGTGTCTCTGTTCTTGTGGC-AC 500 |||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| | Sbjct 554 TGAGCCTAGGTTCACTATTCCGTTAAACCAGTCTGTTAGTGTCTCTGTTCTTGTGGCGA- 612 Query 501 GGAATGATTC-GAATAAGGTTGCTCGGATAATCAACCGGGCTGTGTTTGATTATATAGAC 559 |||||||||| | ||||||| |||||||||||||||||| ||||||| |||||||||||| Sbjct 613 GGAATGATTCTG-ATAAGGTCGCTCGGATAATCAACCGGTCTGTGTTCGATTATATAGAC 671 Query 560 CGTTCATCGTACAGAGCGCTTGCCTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 619 || |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 672 CGGTCATCGTATAGAGCGCTTGCGTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 731 Query 620 AT-TACCGGTATCCGAGCTTGGATCTCTTTGCTTTTTATGGATGTTGAGGATATG-A--A 675 || | ||||||| |||||||||||||||||||| ||||||||||||||||||||| | | Sbjct 732 ATCT-CCGGTATACGAGCTTGGATCTCTTTGCTGTTTATGGATGTTGAGGATATGAATGA 790 Query 676 TGATGGGCCACTCGACGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 735 ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 TGATGGGTTACTCGATGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 850 Query 736 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTAAGACTC 795 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 851 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTATGA-TC 909 Query 796 TAATCAGGTTTTATAGCTCTCTCTCAGGTTTGGAACTCT 834 | | || | |||||| |||||||||||||||||| Sbjct 910 C--T-A--TTA-A-AGCTCTTTCTCAGGTTTGGAACTCT 941 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42899961538 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5