BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494063
Length=879
Score E
Sequences producing significant alignments: (Bits) Value
AT5G39250.1 | Symbols: | F-box family protein | chr5:15724487-... 1118 0.0
> AT5G39250.1 | Symbols: | F-box family protein | chr5:15724487-15725756
FORWARD LENGTH=1031
Length=1031
Score = 1118 bits (605), Expect = 0.0
Identities = 751/819 (92%), Gaps = 19/819 (2%)
Strand=Plus/Plus
Query 23 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 ATGTTTAGTGAAGAAGTATTGAAGAATGTGTTTCCATTGCTAGAAGGCGAAGATCTCGCG 194
Query 83 GCATGTATGTGTGTATGTAGACAGTGGAGAGATATCGCTATTGACGATTTTTATTGGAAA 142
|||||||| |||| || | ||| |||||||||||||| | |||||||| || ||||||
Sbjct 195 TCATGTATGGGTGTTTGCAAACAATGGAGAGATATCGCAAGAGACGATTTCTACTGGAAA 254
Query 143 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAAAGGCATAAACCTCCTACTGAAACA 202
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 255 TGTCAATGTGCAAAGAAATGGCCATCGGTTTGCAAACGGCACAAACCTCCTACTGAAACA 314
Query 203 TATTACAAGATGTATCAAATGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 262
|| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 315 TACTACAAAATGTATCAAACGTTTAGTAAGCGGCGGTTAAACCGCGCGCTTCCTCCTCCG 374
Query 263 AGATTGTCGTTTGAAAACTTGGAGTTCTTT-ATCGATATTTGGTCAGAGGAGAAACTTGT 321
|||||||||| |||||||||||||| ||| |||||||||||||| || |||| || ||
Sbjct 375 CGATTGTCGTTCGAAAACTTGGAGTT-TTTCATCGATATTTGGTCGGAAGAGAGGCTCGT 433
Query 322 TTTCTCGGGGTTAATACTCGGTGTTGCATTGGAAAAGGGGATCAAAACGTTACCGTTAGG 381
|||||||||||||||| ||||||||| |||||||| || ||| ||||||||||||||||
Sbjct 434 GTTCTCGGGGTTAATACCCGGTGTTGCGTTGGAAAATGGTATCGAAACGTTACCGTTAGG 493
Query 382 GATCAGTAATGTTCTTAGAACTCACCTTGGTAGACCTGATTATAAGATGGTTGTTCCTGC 441
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 494 GATCAGTAATGTTCTTAGAACTCATCTTGGTAGACCTGATTACAAGATGGTTGTTCCTGC 553
Query 442 TGAGCCTAGGTTTACTATTCCGTTAAATCAGTCGGTTAGTGTCTCTGTTCTTGTGGC-AC 500
|||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||| |
Sbjct 554 TGAGCCTAGGTTCACTATTCCGTTAAACCAGTCTGTTAGTGTCTCTGTTCTTGTGGCGA- 612
Query 501 GGAATGATTC-GAATAAGGTTGCTCGGATAATCAACCGGGCTGTGTTTGATTATATAGAC 559
|||||||||| | ||||||| |||||||||||||||||| ||||||| ||||||||||||
Sbjct 613 GGAATGATTCTG-ATAAGGTCGCTCGGATAATCAACCGGTCTGTGTTCGATTATATAGAC 671
Query 560 CGTTCATCGTACAGAGCGCTTGCCTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 619
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 672 CGGTCATCGTATAGAGCGCTTGCGTTTGAGTATCTTGACTTGTCTCCTTGTTATCCTTTT 731
Query 620 AT-TACCGGTATCCGAGCTTGGATCTCTTTGCTTTTTATGGATGTTGAGGATATG-A--A 675
|| | ||||||| |||||||||||||||||||| ||||||||||||||||||||| | |
Sbjct 732 ATCT-CCGGTATACGAGCTTGGATCTCTTTGCTGTTTATGGATGTTGAGGATATGAATGA 790
Query 676 TGATGGGCCACTCGACGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 735
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 TGATGGGTTACTCGATGTTTTCGGGATTCAGTTGGATTTCAATGATGTTGCTGACACTAA 850
Query 736 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTAAGACTC 795
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 851 AGAAGAGGTTTTGTGGCTTCTAGATATGCTTGATTGGAAGTGAAAACAAGCTTATGA-TC 909
Query 796 TAATCAGGTTTTATAGCTCTCTCTCAGGTTTGGAACTCT 834
| | || | |||||| ||||||||||||||||||
Sbjct 910 C--T-A--TTA-A-AGCTCTTTCTCAGGTTTGGAACTCT 941
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42899961538
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5