BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494085
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38970.1 | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassi... 2591 0.0
AT3G30180.1 | Symbols: CYP85A2, BR6OX2 | brassinosteroid-6-oxid... 1203 0.0
> AT5G38970.1 | Symbols: BR6OX1, ATBR6OX, CYP85A1, BR6OX | brassinosteroid-6-oxidase
1 | chr5:15594674-15597885 REVERSE LENGTH=1770
Length=1770
Score = 2591 bits (1403), Expect = 0.0
Identities = 1588/1677 (95%), Gaps = 14/1677 (1%)
Strand=Plus/Plus
Query 1 TTTTAAAACAGAGCAGATAACAGAGTGAGATGGGAACAATGATGGTGATGATGGGTCTTC 60
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 83 TTTTAAAACAGAGCAGAAAACAGAGTGAGATGGGAGCAATGATGGTGATGATGGGTCTTC 142
Query 61 TCTTTATCATTGTCTCGCTCTGTTCCGCTCTTCTTCGATGGAATCAGATGCGATATACCA 120
|||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 143 TCTTGATCATCGTGTCTCTCTGTTCCGCTCTCCTTCGATGGAATCAGATGCGATATACCA 202
Query 121 AGAATGGTCTCCCTCCTGGAACCATGGGCTGGCCAATCTTTGGTGAAACCACCGAGTTTC 180
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 203 AGAATGGTCTTCCTCCTGGAACCATGGGCTGGCCAATCTTTGGCGAAACCACCGAGTTTC 262
Query 181 TCAAACACGGCCCCAACTTCATGAGAAACCAAAGACTCCGATATGGGAATTTTTTCAAAT 240
||||||| ||||||||||||||||||||||||||||||||||| |||| ||| |||||||
Sbjct 263 TCAAACAAGGCCCCAACTTCATGAGAAACCAAAGACTCCGATACGGGAGTTTCTTCAAAT 322
Query 241 CTCATCTTCTTGGTTGTCCAACGTTAGTCTCGATGGACTCAGAAGTAAACAGATACATTT 300
|||||||||| ||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 323 CTCATCTTCTAGGTTGTCCAACGTTAATCTCAATGGACTCAGAAGTAAACAGATACATTT 382
Query 301 TAAAGAACGAATCAAAAGGTTTGGTTCCTGGTTACCCACAATCCATGCTTGATATTCTCG 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 383 TAAAGAACGAATCAAAAGGTTTGGTTCCTGGTTACCCACAATCGATGCTTGATATACTTG 442
Query 361 GAACTTGCAACATGGCTGCGGTTCACGGTTCGAGCCACCGGCTTATGAGAGGTTCACTTC 420
| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 443 GGACTTGTAACATGGCTGCGGTTCACGGTTCGAGCCACCGGCTTATGAGAGGCTCGCTTC 502
Query 421 TCTCTCTTATAAGCTCGACCATGATGAGAGATCATATCTTGCCTAAAGTTGATCACTTCA 480
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 TGTCTCTCATAAGCTCGACCATGATGAGAGATCATATCTTGCCTAAAGTTGATCACTTCA 562
Query 481 TGAGAAGCTATCTTGGTCAGTGGAATGAGCTTGAGGTTATTGATATCCAGGATAAGACCA 540
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 563 TGAGAAGCTATCTTGATCAGTGGAATGAGCTTGAGGTTATTGATATCCAAGATAAGACCA 622
Query 541 AACATATGGCATTTTTATCTTCACTGACACAAATCGCTGGGAATTTAAGAAAACCATTCA 600
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 623 AACATATGGCATTTTTATCTTCACTGACACAAATCGCTGGGAACTTAAGAAAACCATTTG 682
Query 601 TTGAGGAATTCAAAACTGCGTTCTTCAAGCTTGTTGTTGGAACTTTATCGGTTCCGATCG 660
|||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||| |
Sbjct 683 TTGAAGAATTCAAAACTGCATTCTTCAAGCTTGTTGTTGGGACTTTATCCGTTCCGATTG 742
Query 661 ATCTTCCCGGCACAAATTATCGTTGCGGGATCCAAGCAAGAAAGAACATTGATCGGTTTC 720
||||||| |||||||||||||||||||| |||||||||||||| ||||||||| |||| |
Sbjct 743 ATCTTCCGGGCACAAATTATCGTTGCGGAATCCAAGCAAGAAATAACATTGATAGGTTGC 802
Query 721 TAAGAGAGCTGATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTT 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TAAGAGAGCTGATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTT 862
Query 781 ACTTGATGAAGAAGGAAGATAACCGATACCCATTAACCGATGAAGAGATAAGAGACCAAG 840
|||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 863 ACTTGATGAAGAAGGAAGGTAACCGATACCCGTTAACCGATGAAGAGATAAGAGACCAAG 922
Query 841 TCGTGACGATTTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTA 900
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 923 TTGTGACGATTTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTA 982
Query 901 AGTACCTTCATGATCACCCAAAAGCTCTTCTAGAACTCAGAACAGAGCATTTGGCTTTAA 960
|||||||||||||||||||||||||||||| |||||| ||| | ||||||||||| || |
Sbjct 983 AGTACCTTCATGATCACCCAAAAGCTCTTCAAGAACTAAGAGCTGAGCATTTGGCATTCA 1042
Query 961 GGGAAAGTAAACGACCA-GACGAACCACTTGGTCTTGAGGATGTAAAGTCAATGAAGTTC 1019
||||||| |||||| || ||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1043 GGGAAAGAAAACGA-CAGGACGAACCACTCGGTCTTGAGGACGTGAAGTCAATGAAGTTC 1101
Query 1020 ACTAGAGCTGTTATTTTTGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGG 1079
||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 ACTCGAGCTGTGATTTATGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGG 1161
Query 1080 AAAACTACTCGTGACTTAGAAATCAATGGTTATTTAATCCCAAAAGGATGGAGAATTTAT 1139
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1162 AAAACTACTCGTGACTTGGAAATCAACGGTTATTTAATCCCAAAAGGATGGAGAATTTAT 1221
Query 1140 GTATACACGAGGGAAATTAATTACGATGCAAATCTATATGAAGACCCATTGATCTTTAAT 1199
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1222 GTATACACGAGGGAAATTAATTACGATGCAAATCTTTATGAAGACCCATTGATCTTTAAT 1281
Query 1200 CCATGGAGATGGATGAAGAAGAGCTTGGAGTCACAAAACTCATGCTTTGTGTTTGGAGGT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1282 CCATGGAGATGGATGAAGAAGAGCTTGGAGTCACAAAACTCATGCTTTGTGTTTGGAGGT 1341
Query 1260 GGGACAAGGCTTTGTCCTGCCAATGAACTAGGGATTGTCGAGATCTCGAGCTTCCTCCAT 1319
||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||
Sbjct 1342 GGGACAAGGCTTTGTCCTGGTAAGGAACTAGGGATTGTCGAGATCTCGAGCTTTCTCCAT 1401
Query 1320 TACTTTGTTACGAGATACAGATGGGAGGAAATAGGAGGGGATGAATTAATGGTGTTTCCA 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 TACTTTGTTACGAGATACAGATGGGAGGAAATAGGAGGGGATGAATTAATGGTGTTTCCG 1461
Query 1380 AGAGTTTTTGCACCAAAAGGCTTCCATCTTAGGATTTCACCCTACTAATTT-TAACTTTT 1438
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1462 AGAGTTTTTGCACCAAAAGGCTTCCATCTTAGGATTTCACCCTACTAATTTCTAACTTTT 1521
Query 1439 TaaaaaaaaTAATATAGATTTTATGCACA-A-AGGTTACAGAAGACGTATATGAAGCAAC 1496
|||| ||||||||||||||||||||||| | ||| |||||||||||||||||||| |||
Sbjct 1522 TAAATAAAATAATATAGATTTTATGCACGCAGAGGATACAGAAGACGTATATGAAGAAAC 1581
Query 1497 AAAAGAAGATAATTATATATATTTTTCTTTCTTTTTGACCCATATTTTTGTTCTCATTTA 1556
|| |||||||||||||| || ||||| ||| |||||||| ||||||||||||||||||||
Sbjct 1582 AAGAGAAGATAATTATAAATTTTTTT-TTT-TTTTTGACACATATTTTTGTTCTCATTTA 1639
Query 1557 AGAGTCTTCTGGTCATATGTACATAACCATAAGCAG--T--T-TTATTATAT--CTATTT 1609
|||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||
Sbjct 1640 AGAGTCTTCTGGTCATATGTACATAACCATAAGCAGCATAATCTTATTATATATCTATTT 1699
Query 1610 CTCTGTAACTCTATTTGAACTTGAAGTATATCTCTGGCTAATTCTTGATGATGTTCT 1666
|| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1700 CTGTATAACTCTATTTGAACTTGAAGTATATCTCTGGCTATTTCTTGATGATGTTCT 1756
> AT3G30180.1 | Symbols: CYP85A2, BR6OX2 | brassinosteroid-6-oxidase
2 | chr3:11810737-11813765 FORWARD LENGTH=1784
Length=1784
Score = 1203 bits (651), Expect = 0.0
Identities = 1175/1424 (83%), Gaps = 52/1424 (4%)
Strand=Plus/Plus
Query 28 AGATGGGAACAATGATGGTGATGATGGGTCTTCTCT-TTATCATTGTCTCG-CTCTGTTC 85
||||||| | ||||||| |||| |||||||||| | | |||||||| | | | ||| |
Sbjct 129 AGATGGGCATAATGATGATGATTTTGGGTCTTCT-TGTGATCATTGT-TTGTTTATGTAC 186
Query 86 CGCTCTTCTTCGATGGAATCAGATGCGATATACCAAGAATGGTCTCCCTCCTGGAACCAT 145
|||||||| |||||||| |||||||||||| | ||||| ||||| ||||||||||||||
Sbjct 187 TGCTCTTCTCCGATGGAACCAGATGCGATATTCTAAGAAAGGTCTTCCTCCTGGAACCAT 246
Query 146 GGGCTGGCCAATCTTTGGTGAAACCACCGAGTTTCTCAAACACGGCCCCA-ACTTCATGA 204
|||||||||||| ||||||||||| || |||||||| ||||| || ||| | |||||||
Sbjct 247 GGGCTGGCCAATATTTGGTGAAACGACTGAGTTTCTTAAACAAGG-ACCAGATTTCATGA 305
Query 205 GAAACCAAAGACTCCGATATGGGAATTTTTTCAAATCTCATC-TTCTTGGTTGTCCAACG 263
|||||||||||| ||||||||| ||| ||||| ||||| | |||||||||| |||||
Sbjct 306 AAAACCAAAGACTAAGATATGGGAGTTTCTTCAAGTCTCA-CATTCTTGGTTGCCCAACA 364
Query 264 TTAGTCTCGATGGACTCAGAAG-TAAACAGATACATTTTAAAGAACGAATCAAAAGG-TT 321
||||||| |||||| ||| || |||||||||||||| ||| ||| ||||| ||||| |
Sbjct 365 ATAGTCTCAATGGACGCAG-AGTTAAACAGATACATTCTAATGAATGAATCGAAAGGACT 423
Query 322 TGGTT-CCTGGTTACCCACAATCCATGCTTGATATTCTCGGAACTTGCAACATGGCTGCG 380
| ||| || |||||||| ||||| |||||||||||||| || || |||||||| ||||||
Sbjct 424 T-GTTGCC-GGTTACCCGCAATCTATGCTTGATATTCTAGGGACATGCAACATAGCTGCG 481
Query 381 GTTCACGGTTCGAGCCACCGGCTTATGAGAGGTTCACTT-CTCTCTCTT-ATAAGCTCGA 438
||||| || ||||||||||||| |||||||| || || || ||| || |||||| | |
Sbjct 482 GTTCATGGCCCGAGCCACCGGCTAATGAGAGGCTC-GTTGCTTTCT-TTAATAAGCCCAA 539
Query 439 CCATGATGAGAGATCATATCTTGCCTAAAG-TTGATCACTTCATGAGAAGCTATCTTGGT 497
||||||||| ||| ||| |||||||| ||| ||||| | |||||||||| ||||||| ||
Sbjct 540 CCATGATGAAAGACCATCTCTTGCCT-AAGATTGATGATTTCATGAGAAACTATCTTTGT 598
Query 498 CAG-TGGAATGAGCTTGAGGTTA-TTGATATCCAGGATAAGACCAAACATATGGCATTTT 555
| ||| |||| ||||| | | |||||||||| || ||||||||||||||||||||||
Sbjct 599 -GGTTGGGATGATCTTGA-GACAGTTGATATCCAAGAAAAGACCAAACATATGGCATTTT 656
Query 556 TATCTTCACTGACACAAATCGCTGGGAATTT-AAGAAAACCATTCATTGAGGAAT-TCAA 613
|||| || || |||||| |||| || ||| || ||||||| |||| |||| | |
Sbjct 657 TATCATCGTTGTTACAAATAGCTGAGACTTTGAA-AAAACCAGAGGTTGAAGAATAT-AG 714
Query 614 AACTGCGTTCTTCAAGCTTGTTGTTGGAACTTTATCGGTTCCGATCGATCTTCCC-GGCA 672
||| | ||| |||||||||||||| |||||| ||||||| ||||||||| |||| || |
Sbjct 715 AACAGAGTTTTTCAAGCTTGTTGTGGGAACTCTATCGGTCCCGATCGAT-ATCCCGGGAA 773
Query 673 CAAATTATCGTTGCGGGA-TCCAAGCAAGAAAGAACATTGATCGGTT-TCTAAGAGAGCT 730
| ||||| || | ||| ||||||||||||| ||||| ||| |||| | | | ||| ||
Sbjct 774 CGAATTACCGCAG-TGGAGTCCAAGCAAGAAACAACATCGATAGGTTAT-TGACAGAACT 831
Query 731 GATGCAAGAACGTAGAGATTCTGGAGAAACATTCACAGACATGTTAGGTTACTTGATGAA 790
|||||||||| | | ||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 832 GATGCAAGAAAGAAAAGAGTCTGGAGAAACTTTCACAGACATGTTGGGTTACTTGATGAA 891
Query 791 GAAGGAAGATAACCGATACCCATTAACCGATGAAGAGATAAGAGACCAAGTCGTGACGAT 850
||||||||||||||||||| ||||||||| ||||||||||||| ||||| || |||||
Sbjct 892 GAAGGAAGATAACCGATACTTGTTAACCGATAAAGAGATAAGAGATCAAGTGGTAACGAT 951
Query 851 TTTGTATTCGGGTTACGAAACTGTCTCTACGACCTCAATGATGGCTCTTAAGTACCTTCA 910
|||||||| ||||| || ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 952 CTTGTATTCCGGTTATGAGACTGTCTCTACAACCTCCATGATGGCTCTTAAGTATCTCCA 1011
Query 911 TGATCACCCAAAAGCTCTTCTAGAACTCAGAACAGAGCATTTGGCTTTAAGGGAAAGTAA 970
|||||| |||||||||||| ||||||||||| ||| ||||||||| ||||||| || ||
Sbjct 1012 TGATCATCCAAAAGCTCTTGAAGAACTCAGAAGAGAACATTTGGCTATAAGGGAGAGAAA 1071
Query 971 ACGACCAGACGAACCACTTGGTCTTGAGGATGT-AAAGTCAATGAAGTTCACTAGAGCTG 1029
|||||| |||||||| || ||| || ||| | ||| || ||||| |||||| ||||||
Sbjct 1072 ACGACCTGACGAACCGCTCACTCTCGACGATATTAAA-TCGATGAAATTCACTCGAGCTG 1130
Query 1030 TTATTTTTGAGACATCAAGATTGGCAACGATCGTTAATGGGGTCCTAAGGAAAACTACTC 1089
| || |||||||||||||||||||||||||| |||||||| ||||| |||||||||||||
Sbjct 1131 TGATCTTTGAGACATCAAGATTGGCAACGATTGTTAATGGTGTCCTTAGGAAAACTACTC 1190
Query 1090 GTGACTTAGAAATCAATGGTTATTTAATCCCAAAAGGATGGAGAATTTATGTATACACGA 1149
||||||||| |||| |||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 1191 ACGACTTAGAACTCAACGGTTATTTAATCCCAAAAGGTTGGAGAATTTACGTATACACAA 1250
Query 1150 GGGAAATTAATTACGATGCAAATCTATATGAAGACCCATTGATCTTTAATCCATGGAGAT 1209
| || ||||| || ||| || ||| |||||||| ||| |||||||||| ||||||||||
Sbjct 1251 GAGAGATTAACTATGATACATCTCTTTATGAAGATCCAATGATCTTTAACCCATGGAGAT 1310
Query 1210 GGATG-AAGAAGAGCTTGGAGTCACAAAA-CTCATG-CTTTGTGTTTGGAGGTGG-GACA 1265
||||| || |||||||| || ||| || | || || ||| | ||||||||||| | |
Sbjct 1311 GGATGGAA-AAGAGCTTAGAATCA-AAGAGCT-ATTTCTTACTCTTTGGAGGTGGAGTTA 1367
Query 1266 AGGCTTTGTCCTGCCAATGAACTAGGGATTGTCG-A-GATCTCGAGCTTCCTCCATTACT 1323
||||||| |||| || |||||||| || ||| | | |||| |||||||| || ||||
Sbjct 1368 -GGCTTTGCCCTGGAAAGGAACTAGGAATC-TCGGAAG-TCTCAAGCTTCCTTCACTACT 1424
Query 1324 TTGTTACGAGATACAGATGGGAGGA-AATAGGAGGGGATGAATTAATGGTGTTTCCAAGA 1382
||||||| | ||| |||||||| || ||| |||| || |||||||||| |||||||||
Sbjct 1425 TTGTTACAAAATATAGATGGGAAGAGAAT-GGAGAAGACAAATTAATGGTCTTTCCAAGA 1483
Query 1383 GTTTTTGCACCAAAAGGCTTCCATCTTAGGAT-TTCACCCTACT 1425
|||| |||||||||||| | |||||||| | | |||||| ||||
Sbjct 1484 GTTTCTGCACCAAAAGGATACCATCTTAAG-TGTTCACCTTACT 1526
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5