BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494086
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38940.1 | Symbols: | RmlC-like cupins superfamily protein ... 1232 0.0
AT5G38930.1 | Symbols: | RmlC-like cupins superfamily protein ... 1014 0.0
AT5G38910.1 | Symbols: | RmlC-like cupins superfamily protein ... 529 2e-149
> AT5G38940.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15588757-15589666 FORWARD LENGTH=826
Length=826
Score = 1232 bits (667), Expect = 0.0
Identities = 757/801 (95%), Gaps = 4/801 (0%)
Strand=Plus/Plus
Query 1 ATGGCAATGAAGAGTCTCTCATATCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 15 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCA 74
Query 61 TTGGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 75 TTAGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCA 134
Query 121 GCAAATGGAATTTTTGTTAATGGAAAGTTCTGCAAGGATCCGAAGCTCGTCACAGCAGAT 180
|| ||||| |||||||||||||||||||||||||||| || ||||| ||||||||||||
Sbjct 135 GCCAATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCAAAGCTGGTCACAGCAGAT 194
Query 181 GACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCCGTAACTAGTCCAGTTGGGTCGACC 240
||||||||||||||||||||||||| |||||||||| | |||||||| ||||||||||||
Sbjct 195 GACTTCTTTTTCTCAGGGCTTCAAACTGCAAGACCCATTACTAGTCCCGTTGGGTCGACC 254
Query 241 GTGACAGCCGTCAATGTTAACAACCTTCTCGGGTTAAACACTCTTGGAATCTCCCTTGTT 300
||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 255 GTGACAGCCGTCAATGTTAACAACCTTCTTGGATTAAACACTCTTGGAATCTCCCTTGTC 314
Query 301 CGTATTGATTATGCGGTTAACGGACAAAACCCGCCTCACACTCACCCACGTGCCACGGAG 360
|||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||
Sbjct 315 CGTATTGATTATGCGGTTAACGGACAGAACCCACCTCACACCCACCCACGTGCCACAGAG 374
Query 361 ATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAAT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 375 ATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAAT 434
Query 421 CGCCTCTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTAATC 480
||||| ||| | ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 435 CGCCTATTCTCAAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCCGAGGGACTCATC 494
Query 481 CATTTCCAAGCAAACATTGGCAAGGGACCAGCAGTTGCATTCGCCGCTCTAAGCAGCCAA 540
||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 495 CATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCAA 554
Query 541 AACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAGACCCA 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 555 AACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCCATAAACCCA 614
Query 601 ACTATTCTTGCAAAGGCGTTCCAGTTGGACCCAAGGGTTGTTGTGGATCTACAGACCAAG 660
||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||
Sbjct 615 ACTATTCTTGCAAAGGCATTCCAGTTGAACCCAAGGGTTGTCATGGATCTACAGACCAAG 674
Query 661 TTCAAGAAATAATAATATTGTGATTTGAATTGCTTTCCCTTTATGTACTTGTGCATGAAT 720
||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| |||||
Sbjct 675 TTCAAGAAATAATGATATCGTGATTTGAGTTGCTTTCCCTTTATGTACTTGTGCCTGAAT 734
Query 721 AACAATCTTGTATTTCCGTTCATCGTATCATCATGACATGATGTCTTTCTTTGCTTTTAC 780
|| |||||||||||||||| ||| ||||||||| | |||||||||| |||||||||||
Sbjct 735 AAGGATCTTGTATTTCCGTTTATCATATCATCAT-A--TGATGTCTTT-TTTGCTTTTAC 790
Query 781 CTTGATTCAATTCTAAATAAA 801
|||||||||||||||||||||
Sbjct 791 CTTGATTCAATTCTAAATAAA 811
> AT5G38930.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15585073-15585841 FORWARD LENGTH=672
Length=672
Score = 1014 bits (549), Expect = 0.0
Identities = 635/676 (94%), Gaps = 8/676 (1%)
Strand=Plus/Plus
Query 1 ATGGCAATGAAGAGTCTCTCATATCTTGCAG-TGCTCTCTCTCTTGGCTTTAACACTTCC 59
|||||||||||||||||||||| |||||||| | || |||||||||||||||||||||||
Sbjct 1 ATGGCAATGAAGAGTCTCTCATTTCTTGCAGCT-CTATCTCTCTTGGCTTTAACACTTCC 59
Query 60 ATTGGCCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACACCTC 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 60 ATTAACCATTGCTTCTGATCCAAGCCAACTTCAAGACTTTTGTGTCAGCGCCAACAGCTC 119
Query 120 AGCAAATGGAATTTTTGTTAATGGAAAGTTCTGCAAGGATCCGAAGCTCGTCACAGCAGA 179
||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 120 AGCAAATGGCGTTTTTGTTAATGGAAAGTTCTGCAAGGACCCAAAGCTGGTCACAGCAGA 179
Query 180 TGACTTCTTTTTCTCAGGGCTTCAAAATGCAAGACCCGTAACTAGTCCAGTTGGGTCGAC 239
||||||||||||| |||||||||||| |||||||||| |||| ||||| |||||||||||
Sbjct 180 TGACTTCTTTTTCCCAGGGCTTCAAACTGCAAGACCCATAACAAGTCCTGTTGGGTCGAC 239
Query 240 CGTGACAGCCGTCAATGTTAACAACCTTCTCGGGTTAAACACTCTTGGAATCTCCCTTGT 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 240 CGTGACAGCCGTCAATGTTAACAACCTTCTTGGGTTAAACACTCTTGGAATCTCCCTTGT 299
Query 300 TCGTATTGATTATGCGGTTAACGGACAAAACCCGCCTCACACTCACCCACGTGCCACGGA 359
|||||||||||||||||| ||||||| ||||| |||||||| |||||||||||||||||
Sbjct 300 CCGTATTGATTATGCGGTTGACGGACAGAACCCACCTCACACCCACCCACGTGCCACGGA 359
Query 360 GATCTTGGTTGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGATAA 419
||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||
Sbjct 360 GATCTTGGTTGTCGAACTAGGAACACTTCTCGTAGGGTTTGTTACATCAAACCCCGATAA 419
Query 420 TCGCCTCTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTAAT 479
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 420 TCGCCTATTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTCAT 479
Query 480 CCATTTCCAAGCAAACATTGGCAAGGGACCAGCAGTTGCATTCGCCGCTCTAAGCAGCCA 539
|||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 480 CCATTTTCAAGCAAACATTGGCAAGGCACCAGCGGTTGCATTCGCCGCTCTAAGCAGCCA 539
Query 540 AAACCCTGGTGTCATCACTATTGCCAACA-CCGTGTTTGGGGCTAACCCAGCCAT-AGAC 597
|||||||||||||||||||||||| | || ||||||||||||||||||||||||| | ||
Sbjct 540 AAACCCTGGTGTCATCACTATTGC-ACCAACCGTGTTTGGGGCTAACCCAGCCATCA-AC 597
Query 598 CCAACTATTCTTGCAAAGGCGTTCCAG-TTGGACCCAAGGGTTGTTGTGGATCTACAGAC 656
|||| |||||||||||||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 598 CCAAATATTCTTGCAAAGGCGTTCCAGGTTG-ACCCAAGGGTTGTCATGGATCTACAGAC 656
Query 657 CAAGTTCAAGAAATAA 672
||||||||||||||||
Sbjct 657 CAAGTTCAAGAAATAA 672
> AT5G38910.1 | Symbols: | RmlC-like cupins superfamily protein
| chr5:15578811-15579584 FORWARD LENGTH=669
Length=669
Score = 529 bits (286), Expect = 2e-149
Identities = 548/672 (82%), Gaps = 28/672 (4%)
Strand=Plus/Plus
Query 7 ATGAAGAGTCTCTCATATCTTGCAGTGCTCTCTCTCTTGGCTTTAACACTTCCATT-GGC 65
||||| ||| |||||| ||||||||| | ||| ||||||| |||||||| |||| |
Sbjct 1 ATGAAAAGTTTCTCATTTCTTGCAGTTTTATCTATCTTGGCAATAACACTTTCATTAAG- 59
Query 66 CATTGCTTCTGATCCAAGC-CAACTTCAAGACTTTTGTGTCAGCGCCAACACCTCAGCAA 124
|| ||||| || |||||| | ||||| |||||||| || | | ||||||| |||||
Sbjct 60 CAAGGCTTCGGACCCAAGCTC-TCTTCAGGACTTTTGCGTTGGTGTCAACACCCCAGCAG 118
Query 125 ATGGAATTTTTGTTAATGGAAAGTTCTGCAAGGATCCGAAGCTCGTCACAGCAGATGACT 184
|||| ||||||| || ||||||||||||||||| |||||||||||||||| ||| ||||
Sbjct 119 ATGGTGTTTTTGTGAACGGAAAGTTCTGCAAGGACCCGAAGCTCGTCACAGTAGAAGACT 178
Query 185 TCTTTTTCT-CAGGGCTTCAAAATGCAAGACCCGTAACTAGTCC---AGTTGGGTCGACC 240
||||||| | ||||||| || | |||||| || | ||| ||| | |||||| | |
Sbjct 179 TCTTTTT-TACAGGGCTCCACGAGGCAAGA-CC--ACCTAATCCAAAAACTGGGTCTAAC 234
Query 241 GTGACAGCCGTCAATGTTAACAACCTTCTC-GGGTTAAACACTCTTGGAATCTCCCTTGT 299
|| ||||||||||||||||||||||| | | ||||||||||||||||||||||| |||||
Sbjct 235 GTAACAGCCGTCAATGTTAACAACCTAC-CAGGGTTAAACACTCTTGGAATCTCACTTGT 293
Query 300 TCGTATTGATTATGCG-GTTAACGGACAAAACCCGCCTCACACTCACCCACGTGCCACGG 358
||||| || |||| | ||| ||||||| ||||| |||||||| |||||||||||| | |
Sbjct 294 CCGTATCGACTATG-GAGTTTACGGACAGAACCCACCTCACACCCACCCACGTGCCTCCG 352
Query 359 AGATCTTGGT-TGTCGAACAAGGAACACTTCTCGTAGGGTTTGTCACATCAAACCCGGAT 417
|| |||| || ||||| ||||||||| |||| ||||||||||| |||||||| ||
Sbjct 353 AGGTCTT-GTATGTCGCGGTTGGAACACTTTTCGTTGGGTTTGTCACGTCAAACCCCGAA 411
Query 418 AATCGCCTCTTCACTAAAGTTCTCAACGAGGGTGATGTATTTGTGTTTCCAGAGGGACTA 477
|||||||| |||| |||| || ||||||||||||| |||||||||||| |||||||
Sbjct 412 AATCGCCTTTTCAGTAAAACACTTTACGAGGGTGATGTCTTTGTGTTTCCACAGGGACTC 471
Query 478 ATCCATTTCCAAGCAAACATTGGCAAGGGA-CCAGCAGTTGCATTCGCCGCTCTAAGCAG 536
|| |||||||||| ||| |||| || | || || ||||||||||| | ||| |||||
Sbjct 472 ATTCATTTCCAAGTGAACGTTGG-AAAATATCCGGCGGTTGCATTCGCTGGTCTCAGCAG 530
Query 537 CCAAAACCCTGGTGTCATCACTATTGCCAACACCGTGTTTGGGGCTAACCCAGCC-ATAG 595
||||||||||||||||||||||||||| |||||||||||||| |||||||| | ||||
Sbjct 531 CCAAAACCCTGGTGTCATCACTATTGCTGACACCGTGTTTGGGTCTAACCCA-CAGATAG 589
Query 596 ACCCAACTATTCTTGCAAAG-GCGTTCCAG-TTGGACCC-AAGGGTTGTTGTGGATCTAC 652
|||||| | ||||||||| | || |||||| ||| |||| ||| |||| |||||||||
Sbjct 590 ACCCAAGTTTTCTTGCAA-GTGCATTCCAGGTTG-ACCCTAAGA-TTGTCATGGATCTAC 646
Query 653 AGACCAAGTTCA 664
||||||||||||
Sbjct 647 AGACCAAGTTCA 658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5