BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494088
Length=966
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38900.1 | Symbols: | Thioredoxin superfamily protein | chr... 1386 0.0
> AT5G38900.1 | Symbols: | Thioredoxin superfamily protein | chr5:15573505-15575618
REVERSE LENGTH=978
Length=978
Score = 1386 bits (750), Expect = 0.0
Identities = 901/973 (93%), Gaps = 13/973 (1%)
Strand=Plus/Plus
Query 1 TTTTGACTTCTCTCTCC----ATTAGAGGATTCACGATCTTCTTCCTCCATTCTTTTTCC 56
||||||||| ||||||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 12 TTTTGACTTGTCTCTCCATTAATTAGAGGTTTCACGATCTTCTTCCTCCAATCTTTTTCC 71
Query 57 AGGAACACTCATAATGGCTGAGTCTGCAAGCAACACCGGTTCAAGAAAGCTTATTCAGAT 116
||||| | |||| ||||||||||||||||||||||||| ||||| |||||| ||||| ||
Sbjct 72 AGGAAAAGTCATTATGGCTGAGTCTGCAAGCAACACCGCTTCAAAAAAGCTCATTCAAAT 131
Query 117 TGATGTGAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTGGGCAAGAAGAATCTTGACAA 176
|| || |||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct 132 CGACGTAAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTAGGAAAGAAGAATCTTGACAA 191
Query 177 AGCCATTGAAGCATCTAAAGATCAATACAACTTTGAGATTCGATGGCGTCCGTTTTTCCT 236
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 192 AGCTATTGAAGCATCTAAAGATCAATACAACTTCGAGATTCGATGGCGTCCGTTTTTCCT 251
Query 237 TGATCCATCTGCACCGAAAGACGGTGTGAGTAAGAAAGAGTTTTATCGACAGAAATATGG 296
||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct 252 TGATCCATCTGCACCTAAAGAAGGTGTGAGTAAGAAAGAGTTTTATCTACAGAAATATGG 311
Query 297 AAACAGATATGAAGGAATGTTCGCCAGAATGTCCGAGATCTTTAAAGGTCTTGGATTAGA 356
|||||||||| |||||||||| || |||||||||||| |||||||||||||||| |||||
Sbjct 312 AAACAGATATCAAGGAATGTTTGCAAGAATGTCCGAGGTCTTTAAAGGTCTTGGCTTAGA 371
Query 357 GTTTGACACAGCCGGTCTCACAGGCAACAGTCTGGATAGTCATAGACTTATACATTACAC 416
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 372 GTTTGACACAGCTGGTCTCACAGGAAACAGTCTGGATAGTCATAGACTTATACATTATAC 431
Query 417 CGGTAAACAAGCGCCGGACAAACAACATAAACTTGTTGAGGAATTGTTTATCGGTTACTT 476
|||||||||||||||||| || ||||||| ||||||||||||| ||||||||||||||||
Sbjct 432 CGGTAAACAAGCGCCGGAGAAGCAACATACACTTGTTGAGGAACTGTTTATCGGTTACTT 491
Query 477 CACGCAGGGAAAGTTCATCGGTGACAGGGAGTTTTTGGTAGAGACGGCTAAAAAGGTTGG 536
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||
Sbjct 492 TACGCAGGGAAAGTTCATCGGTGATAGAGAGTTTTTGGTAGAGACGGCTAACAAGGTTGG 551
Query 537 GATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGACTCACAGAGGTGAAAGA 596
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 552 GATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGAGTTACAGAGGTGAAAGA 611
Query 597 AGAACTGGCAAAGTATTCGCGAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAA 656
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 612 AGAACTGGCAAAGTATTCGAAAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAA 671
Query 657 GGTGAAACTGAGCGGCGCACAACCGCCGGAAACATTCCAGAGTGCGTTTAAAGCGGCCTC 716
|||||| ||||| || || |||||||| || |||||||||||||||||||||||||||||
Sbjct 672 GGTGAAGCTGAGTGGTGCGCAACCGCCCGAGACATTCCAGAGTGCGTTTAAAGCGGCCTC 731
Query 717 AGCTTGAAACACAAACAGTGAACTCAAGAGTTGTTGAAGTTTTACATCTATGGAGATAGT 776
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 732 GGCTTGAAACACAATCAGTGTACTCAAGAGTTGTTGAAGTTTTACATCTATGGAGATTCT 791
Query 777 CTGTTTCTGTTGTTTGAACTTTAAGTTATTGACTTTTCAA-GAAGTTGGTGTAATAA-AT 834
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct 792 CTGTTTCTGTTGTTTGAGCTTTAAGTTATTGACTTTTCAAAGAAGTTGGTGTAATAAGAT 851
Query 835 TTGTTCTGTGAT-GGTTTGTCTAAATAATTCAGAGAAGTTGATTTCAAACAttcttcttc 893
|| |||| | || ||||||||||| ||||||||||||||||||||||| || || ||||
Sbjct 852 TT-TTCTTT-ATTGGTTTGTCTAA-TAATTCAGAGAAGTTGATTTCAAGCA--CT-CTTC 905
Query 894 ttcttcttGCTCTGATCTCAAAGCAATGTTCTAGATAACAAATTCTTGAAAGATTCAAAC 953
|||||||||||||||||||||| |||||||||||||||||| || ||||| |||||||||
Sbjct 906 TTCTTCTTGCTCTGATCTCAAAACAATGTTCTAGATAACAATTTTTTGAATGATTCAAAC 965
Query 954 TATTTTTCCTTCC 966
|| ||||||||||
Sbjct 966 TACTTTTCCTTCC 978
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47270332327
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5