BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494089
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38890.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 1162 0.0
> AT5G38890.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr5:15569480-15571144 FORWARD LENGTH=849
Length=849
Score = 1162 bits (629), Expect = 0.0
Identities = 788/860 (92%), Gaps = 30/860 (3%)
Strand=Plus/Plus
Query 1 CTCAAATCGGAAATTTTTGAAA-ATATGACGACGGAGCTAGTAACGCCGGGAGATGTAAT 59
||||||||||||| |||||||| | |||||||||| ||||||||||||||||||||||||
Sbjct 4 CTCAAATCGGAAAATTTTGAAACA-ATGACGACGGGGCTAGTAACGCCGGGAGATGTAAT 62
Query 60 CGGGAAAGCAACTGAGCTTAGAGCCGGAAAAGGAGCTTACGTCAACGACACCACAATCTA 119
||||||||| || ||| ||| ||| |||||||||||||||||||||||| |||| |||||
Sbjct 63 CGGGAAAGCGACAGAGTTTAAAGCTGGAAAAGGAGCTTACGTCAACGACGCCACCATCTA 122
Query 120 CGCTTCTCTCACAGGAACTCGTCGGATTGTTTCTCCTCTTCCCGAATCACTTGACCAGAG 179
|||||| |||||||||||| | ||||||||||||||||||||||||||| |||| |||||
Sbjct 123 CGCTTCCCTCACAGGAACTTGCCGGATTGTTTCTCCTCTTCCCGAATCAATTGATCAGAG 182
Query 180 AGCTATTGTGGAAGTTACGGGTCACAAGGCACATGGTCCAATTCCAGAGCCTGGTTCTGT 239
|||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||
Sbjct 183 AGCTATTGTGGAAGTTACAGGTCACAAGGCACATGGTCCTATTCCAGAGACTGGTTCTGT 242
Query 240 TGTCATAGCAAGAGTGACTAAAGTTATGGCTCGGATGGCTGCTGTTGATATCTTGTGTGT 299
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 243 TGTCATAGCAAGAGTGACTAAAGTTATGACTAAGATGGCTGCTGTTGATATCTTGTGTGT 302
Query 300 TGGTTCAAAGGCCGTTCGTGAAAATTTTGCCGGCGTAATTAGGCAACAAGATGTTAGAGC 359
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 303 TGGTTCAAAAGCCGTTCGTGAAAATTTTGCTGGTGTAATTAGGCAACAAGATGTTAGAGC 362
Query 360 AACAGAGATTGATAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGC 419
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 AACAGAGATTGACAAAGTTGACATGCATCAGTCTTTCCATGCTGGTGACATTGTTAGAGC 422
Query 420 TATGGTTCTGTCTCTTGGTGATGCACGGGCTTACTATTTGTCAACTGCTAAGAATGAACT 479
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 423 TATGGTTCTGTCTCTTGGTGATGCACGGGCTTACTACTTGTCAACTGCTAAGAATGAACT 482
Query 480 TGGTGTGGTCTCAGCAGAAAGTGCTGAGGGAGAAACAATGGTTCCGATAAGTTGGACAGA 539
||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 483 TGGTGTGGTCTCAGCTGAAAGTGCTGCGGGCGAAACAATGGTTCCGATAAGTTGGACAGA 542
Query 540 GATGCAGTGCCCCTTGTCAGGCCAAACGGAGCAGAGAAAAGTTGCCAAGGTGGGTAATTG 599
|||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 543 GATGCAGTGCCCCTTGTCGGGCCAAACCGAGCAGAGAAAAGTTGCCAAGGTGGGTAATTG 602
Query 600 AATTCAAGACAACACTTTGGCTTCTCTCACATAATGTGGTGTGCTCTCTGCAACAAGACA 659
||||||||||||||||| |||||||||||||||||| |||||| |||||||| |||||||
Sbjct 603 AATTCAAGACAACACTT-GGCTTCTCTCACATAATGAGGTGTGGTCTCTGCAGCAAGACA 661
Query 660 GA-ATTTTGAGATTGTTACAATTTT---CT-----GTTGTTTGGTTATCAAGTGTAGAGA 710
|| |||| |||||| |||||||||| || |||||||| ||||||||||||||||
Sbjct 662 GACATTT-GAGATTATTACAATTTTGAGCTCTTCTGTTGTTTG-TTATCAAGTGTAGAGA 719
Query 711 TAAGTTTAGAGCAACTTGACCTTATCCCTTC-ATCAAAGTGGGCATATTCAGGATACTAT 769
||| |||||| |||||||||||| | ||| | ||| | | | |||||||||||
Sbjct 720 TAACTTTAGACCAACTTGACCTT-TA--TTCGA-CAA--TAG---T---CAGGATACTAT 767
Query 770 TATTAATTAGAGGATACTCACAAGTTCTTGAACTCAAAAGACATTTTGTTGTTAGAATTT 829
||||| |||| | ||||| |||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 768 TATTA-TTAG-G-ATACTTACAACTTCTTAAACTCGAAAGACATTTTGTTGTTAGAATTT 824
Query 830 GAACATAAATCCATAACTCC 849
||||||||||||||||||||
Sbjct 825 GAACATAAATCCATAACTCC 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5