BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494091
Length=2358
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38840.1 | Symbols: | SMAD/FHA domain-containing protein |... 3428 0.0
> AT5G38840.1 | Symbols: | SMAD/FHA domain-containing protein
| chr5:15551296-15555077 FORWARD LENGTH=2472
Length=2472
Score = 3428 bits (1856), Expect = 0.0
Identities = 2212/2377 (93%), Gaps = 52/2377 (2%)
Strand=Plus/Plus
Query 1 ATGGATCCTCCTCCACCACGAAACCCTAGCCATGAT-TCCGAGCCTCCTGAACCTAACAC 59
||||||||||||||||| |||||||||||||||||| | ||||||||||||||| ||||
Sbjct 49 ATGGATCCTCCTCCACCGCGAAACCCTAGCCATGATAT-CGAGCCTCCTGAACCAAACAG 107
Query 60 TACATCAATTTCTCAAACCGACGAATCCTCAACGCTAGCAGAAGTCTCGTCGATGAATCC 119
|||||||||||| |||| | || || ||| || | || ||||||||||
Sbjct 108 TACATCAATTTCCCAAA--G-CG-AT--GAAAC-CT--C--AA-------CGATGAATCC 149
Query 120 TCCACCTCCCAGAAACCCTAACCTACCTGATCTGAAGACAACGGAAGTA---GTAGAGCC 176
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 150 TCCACCTCCCAGAAACCCTAACCCACCTGATCTGAAGACAACGGAAGTAGTTGTAGAGCC 209
Query 177 CGAGCCAATGGACGAATCCAAGGACGATTCCTCCGTCGCTGTAGACGCGAATAAACCAGT 236
||||||||| || |||||||||||||| | |||||| ||||||||||| ||||||||||
Sbjct 210 CGAGCCAATAGAGGAATCCAAGGACGA-T--TCCGTCACTGTAGACGCGGATAAACCAGT 266
Query 237 TCGTACCCGAACCGTGAAGCAGAATCCAGTCCCCTACACTATTCCAGAGTGGAGTGGCCC 296
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 267 TCGTCCCCGAACCGTGAAGCAGAATCCTGTCCCCTACACTATTCCAGAGTGGAGTGGCCC 326
Query 297 TCCGTCTCACCAATTTCAGCTTGAAGTTCTTAAAGAAGGCGCCATTGTTGACACATTAGA 356
||||| |||||||||||||||||||||||| |||||||||||||||||||| | ||||||
Sbjct 327 TCCGTGTCACCAATTTCAGCTTGAAGTTCTCAAAGAAGGCGCCATTGTTGAGAAATTAGA 386
Query 357 CGTCTATAAGAAAGGAGCTTACTTGTTTGGACGTGATGGTATCTGTGATTTTGCTCTTGA 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 387 CGTCTATAAGAAAGGAGCTTACTTGTTTGGACGTGATGGTATCTGTGATTTTGCTCTTGA 446
Query 417 GCATCCTTCGATTTCTCGGTTTCATGCAGTTATTCAGTACAAGAGAAGTGGAGCTGCGTA 476
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 447 GCACCCTTCGATTTCTCGGTTTCATGCAGTTATTCAGTACAAGAGGAGTGGAGCTGCGTA 506
Query 477 TATATTTGATCTTGGAAGTACGCATGGAACGACTGTTAATAAGAATAAGGTGGATAAAAA 536
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 507 TATATTTGATCTTGGAAGCACGCATGGAACAACTGTTAACAAGAATAAGGTGGATAAAAA 566
Query 537 GGTTTTTGTGGATTTGCATGTTGGTGATGTTATTCGCTTTGGCGGTTCGACTCGATTATA 596
|||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||||
Sbjct 567 GGTTTTTGTGGATTTGAATGTCGGTGATGTTATTCGCTTTGGCGGTTCGACTAGATTATA 626
Query 597 CATTTTTCAAGGACCCTCGGACTTAATGCCACCAGAGAAAGACTTACAATTAATCAGAGA 656
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 627 CATTTTCCAAGGACCCTCGGACTTAATGCCACCAGAGAAAGACTTACAATTAATTAGAGA 686
Query 657 AGCAAAGATGAGAATGGAAATGTCAGAACGAGAAGCTTCACTGCGACGAGCAAGACAGCA 716
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 687 AGCAAAGATGAGAATGGAAATGTCAGAACGAGAAGCTTCACTGCGACGAGCAAGGCAGCA 746
Query 717 AGCATCCATGGCTGATGGTGTTTCATGGGGCATGGGGGAAGATGCTATTGAAGAAGAAGA 776
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 747 AGCATCCATGGCTGATGGTGTTTCATGGGGCATGGGGGAAGATGCTATTGAAGAAGAAGA 806
Query 777 GGATGATACTGAGGAAATCACGTGGCAAACATATACCGGAGAACTCACTCCAAAGCAAGA 836
||||||| ||||||||| || ||||||||||||| |||||||||||||||||||||||
Sbjct 807 GGATGATGTTGAGGAAATTACTTGGCAAACATATAGTGGAGAACTCACTCCAAAGCAAGA 866
Query 837 AAAAACTAAGGAAAAAGTACTGAAACGGTTGGAGAAGATTGGCCATATGAAGAAGGAAGT 896
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 867 AAAAACTAAGGAGAAAGTACTGAAACGGTTGGAGAAGATCGGCCATATGAAGAAGGAAGT 926
Query 897 AGCAGCTATTCGAGCCAAAGACATTTCGCAGGGTGGATTGACACAAGGACAACAAACGCA 956
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 927 AGCAGCTATTCGAGCCAAAGACATTTCTCAGGGTGGATTGACACAAGGACAACAAACGCA 986
Query 957 GATTGCTAGAAATGAGCAGAGAACAGCTGAGCTTCTGGAAGAACTTGAGAACTTGGAAGA 1016
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 987 GATCGCTAGGAATGAGCAGAGAACGGCTGAGCTTCTGGAAGAACTTGAGAACTTGGAAGA 1046
Query 1017 GACACTGAATGACAGCATCCGAGAGAGTTTGGGTGCCAAAACAGGGAGAAAA--C-CCCA 1073
||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||
Sbjct 1047 GACACTGAATGACAGCATCCGGGAAAGTTTGGGTGCCAAAACAGGGAGAAAACCCACCCA 1106
Query 1074 CGGAAAGAAGAAAGGAATTGTAGAAGATGAGGAAGACTTGTCGAGTGATGAAGATGACTT 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1107 CGGAAAGAAGAAAGGAATTGTAGAAGATGAGGAAGACTTGTCGAGTGATGAAGATGACTT 1166
Query 1134 CTATGACCGGACCAAGAAGAAACCATCAACACAGAAAGGCAGCGAAAACCAAACTGTAGA 1193
||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1167 CTATGACCGGACCCAGAAGAAACCATCAACAAAGAAAGGCAGCGAAAACCAAACTGTAGA 1226
Query 1194 AACTGTTGATTCACTTCTAGATAAGAGAGACAATGTCTTGAAAGAAATAGAAGCAAAGAA 1253
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1227 AACTGTTGATTCACTTGTAGATAAGAGAGACAATGTCTTGAAAGAAATAGAAGCAAAGAA 1286
Query 1254 TGAACAGCTTTTAACAGAGAAGAATAAGATGGAGATAGAGAATGTCACAGAGGTTGCATC 1313
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||
Sbjct 1287 TGAACAGCTTTTAACAGAGAAGAGTAAGATGGAGACAGAGAATGTCACAGAGGTTACATC 1346
Query 1314 AGCAGACTCCCTTGATGCCCTTGATGCATACATGACCGGGCTTTCTACAACACTTGTGCA 1373
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1347 GGGAGACTCCCTTGATGCCCTTGATGCATACATGACCGGGCTTTCTACAACACTTGTGCA 1406
Query 1374 AGATAAAACCGCCCAGATCCAGCAAGAGTTGTCTACTCTTCAGTCGGAATTAAGTAGGAT 1433
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1407 AGATAAAACCGCCCAGATCCAGCAAGAGTTGTCTACTCTACAGTCAGAATTAAGTAGGAT 1466
Query 1434 CTTGTACCTTCTAAAGATTGCTGACCCAACTGGAGAAGAGGTTAAGAAAAGAGAGTTGAA 1493
||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1467 CTTATACCTTCTAAAGATTGCTGACCCAACCGGAGAAGAGGTTAAGAAAAGGGAGTTGAA 1526
Query 1494 GTCACAAGAACCAAAAATAAAGAAATCTGAAACACCT-CCTGTAGAAAAGAAGATCAGTA 1552
|||||||||| ||||||||||||||||||||||||| || |||||||||||||||| ||
Sbjct 1527 GTCACAAGAATTAAAAATAAAGAAATCTGAAACACCTTCC-GTAGAAAAGAAGATCAATA 1585
Query 1553 TACCTTTAAAACAAGCTGATTCTAATGAGCATAAGGAGAAAGAAGTGGCCAAAGATTTAG 1612
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1586 TACCTTTAAAACAAGCTGATCCTAATGAGCATAAGGAGAAAGAAGTGGCCAAAGATTTAG 1645
Query 1613 TGGACTCAGACAATAAGCCTGAAGTAGAAAAGAAAGCAAGTGAAACAGCTGAAGAGAAGA 1672
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1646 TGGACTCAGAAAATAAGCCTGAAGTAGAAAATAAAGCAAGTGAAACAGCTGAAGAAAAGA 1705
Query 1673 AGACCCCTGTGTATGTTCCATTGAAACCCCAATGGCTCGGTTCCGCTGCAAATAAAGCCA 1732
||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1706 AGACCACTGTGTATGTTCCATCAAAACCCCAATGGCTCGGTTCCGCTGCAAATAAAGCCA 1765
Query 1733 CAACTGAAGAGAAAAAGCCTGAGATTGTAGCTGCTGCTACCGATAGCACAGAGGATGCTG 1792
|| |||||| ||||| |||||||| ||||||||| |||| |||||||||||||||||||
Sbjct 1766 TAATTGAAGAAAAAAACCCTGAGATAGTAGCTGCTACTACTGATAGCACAGAGGATGCTG 1825
Query 1793 ATGGGTTTGTTGACTATAAAGATAGGAAGAATATTGCTCTAACAACCACAACTGGAATTG 1852
|||||||||| ||||||||| ||||||||||||||||||||||| |||| ||||| |||
Sbjct 1826 ATGGGTTTGTCGACTATAAAAATAGGAAGAATATTGCTCTAACAGCCACCGCTGGAGTTG 1885
Query 1853 AAGGTGCAACAGGATTGATAATaagaaaacgtaagcaagaagacaagagtgaagaagaag 1912
||| || |||||| ||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1886 AAGTTGTAACAGGGTTGATAATAAGAAAACGTAAGCAAGAAGACAAGAGCGAAGAAGATG 1945
Query 1913 atgataagtcgaaggaaaagcaagCAGAGGTCATGGCACAAGACGCAGTTGCTCTCTTAT 1972
||||| || ||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1946 ATGAT---TCAAAGGAAAAGCAAGCAGAGGTCATGGCACAGGATGCAGTTGCTCTCTTAT 2002
Query 1973 TGAAACATTCTGTAGGACATCATGTAAACgaagaaga-a--gaactcagtaaaaaggaag 2029
|||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||||
Sbjct 2003 TGAAACATTCTGTAGGCCATCATGTAAACGAAGAAGACAAAGAACTCAGTAAACAGGAAG 2062
Query 2030 aaagtaagcaaggaagtggtcatagtagaa--a-gaagaagaagaagaCGGCTAAAAAAG 2086
||| ||| ||||||||||| || |||| || | ||||||||||||||||||||||||||
Sbjct 2063 AAAATAATCAAGGAAGTGGCCAAAGTAAAACGAAGAAGAAGAAGAAGACGGCTAAAAAAG 2122
Query 2087 TAGTTGGTCCTGATAAACCAGAATATCTGGATGAAAGCACAGAGTATGATTCATGGGTAC 2146
|||||||||||||||||||||||||||||||||||| || ||| |||||||| |||||||
Sbjct 2123 TAGTTGGTCCTGATAAACCAGAATATCTGGATGAAACCATAGATTATGATTCTTGGGTAC 2182
Query 2147 CTCCTGCAGGACAATCTGGTGATGGACGAACATCTCTGAATGACCGTTTGGGTTATTGAT 2206
||||||||||||||||||||||||| ||||||||||| ||||||||| |||| |||||||
Sbjct 2183 CTCCTGCAGGACAATCTGGTGATGGGCGAACATCTCTAAATGACCGTCTGGGATATTGAT 2242
Query 2207 CGGCGATCGAGTCCCCATAGCAAACCATGGGATTGAGGAGAGCTAGAAGTAGAAGTGGCT 2266
| ||||| |||| ||| ||||||| || ||||||||||||| | |||||||||||
Sbjct 2243 CAGCGATAGAGTTTCCAGAGCAAACTATAGGATTGAGGAGAG---G---TAGAAGTGGCT 2296
Query 2267 TAAACATCTGTCAAGTTTTGCATCATTCT-TCTGGTGATTTCTTTGGTCACA--GTACTT 2323
|||| |||||||||||||||||||| || |||||||||||||| ||||||| ||||||
Sbjct 2297 TAAATATCTGTCAAGTTTTGCATCACTCAGTCTGGTGATTTCTT-GGTCACACAGTACTT 2355
Query 2324 TGTAAATTCA--CTCTAAACCCAAAGCTTTCCTGATT 2358
|||||||||| |||||||||| |||||||||||||
Sbjct 2356 TGTAAATTCATACTCTAAACCCTGAGCTTTCCTGATT 2392
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 117067670940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5