BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494092
Length=1810
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38830.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia f... 2627 0.0
AT3G56300.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia f... 545 4e-154
> AT5G38830.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia
family protein | chr5:15545569-15548186 REVERSE LENGTH=1823
Length=1823
Score = 2627 bits (1422), Expect = 0.0
Identities = 1675/1797 (93%), Gaps = 18/1797 (1%)
Strand=Plus/Plus
Query 28 aaaaaaGGG--TTTTCGTTTTTGTTTACTTCGCCGTG-A----AGCT-GTGAGATTGTGA 79
||||||||| |||||||||||||| ||||||||||| | | | ||||||||||||
Sbjct 28 AAAAAAGGGTTTTTTCGTTTTTGTTAACTTCGCCGTGTAGTTGTGGTGGTGAGATTGTGA 87
Query 80 GAG--ATGGAGGCGGAGAAAATGGAATTGAAGCTCTACAACACGATGACGCAACAGAAGG 137
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 88 GAGATATGGAGGCGGAGAAAATGGAATTGAAGCTCTACAACACGATGACGCAACAGAAAG 147
Query 138 AAGTGTTGATTCCAATCACTCCCGGCAAAATCGGATTATATGTCTGTGGAATCACCGCTT 197
|||| ||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||
Sbjct 148 AAGTTTTGATTCCAATCACTCCTGGCAAAATCGGATTATACGTCTGTGGTATCACCGCTT 207
Query 198 ACGATTTCAGCCATATCGGCCATGCACGCGCCGCCGTTTCCTTTGATGTTCTTTACAGAT 257
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 208 ACGATTTCAGCCATATCGGCCATGCTCGCGCCGCCGTTTCCTTCGATGTTCTTTACAGAT 267
Query 258 ACTTGAAGCATTTGGGTTATGAAGTTAATTTTGTACGGAATTTCACTGATGTTGATGACA 317
||||||||||||||| |||||| |||| |||||| || ||||||||||||||||||||||
Sbjct 268 ACTTGAAGCATTTGGATTATGATGTTACTTTTGTCCGCAATTTCACTGATGTTGATGACA 327
Query 318 AGATTA-TCATTCGTGCTAATGAGAATGGAGAGGACCCGCTAGATTTGAGTAATCGCTTT 376
|||||| | | |||||||||| |||||||||| |||||| |||||||||||||||| |||
Sbjct 328 AGATTATTGA-TCGTGCTAATAAGAATGGAGAAGACCCGTTAGATTTGAGTAATCGGTTT 386
Query 377 TGCGAGGAATATTTGGTAGATATGGGTGCTCTTCAGTGCCTCCTTCCCACCCACCAGCCT 436
||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||
Sbjct 387 TGCGATGAATATTTGGTAGATATGGGTGCTCTGCAGTGCCTCCCTCCCACCCACCAGCCT 446
Query 437 CGTGTCAGCGAACATATGGACCACATTATTAAGATGATAGAAAAGATCATTGAGAAAGAT 496
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 447 CGTGTCAGCGAACATATGGACAACATCATTAAGATGATAGAAAAGATCATTGAGAAAGAT 506
Query 497 TGTGGGTATGTTGTGGAAGGGGATGTATTCTTCTCCGTTGACAAATCGCCAAATTATGGT 556
||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 507 TGTGGGTATGTAGTGGAAGGGGATGTGTTCTTCTCCGTTGACAAATCACCGAATTATGGG 566
Query 557 AAATTATCTGGGCAATTGTTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGATTCG 616
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 567 AAATTATCTGGGCAGTTGTTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTGATTCG 626
Query 617 AGAAAGCGTAACCCCGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCCAAGT 676
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 627 AGAAAGCGTAACCCTGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGCCAAGT 686
Query 677 TGGGAGAGCCCGTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAATGAGT 736
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 687 TGGGAGAGCCCTTGGGGTCCAGGAAGACCAGGATGGCACATCGAGTGCAGTGCAATGAGT 746
Query 737 GCTCATTATCTGTCTCCGAAATTCGACATTCATGGGGGTGGTGCAGATCTGAAATTCCCA 796
| ||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 747 GTTCATTATCTGTCTCCGAAATTTGATATTCATGGAGGTGGTGCAGATCTTAAATTCCCG 806
Query 797 CATCATGAAAATGAGATCGCCCAAACATGTGCTGCATGTGAGGATAGTGGTGTGAATTAC 856
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 807 CATCATGAAAATGAGATCGCCCAGACATGTGCTGCATGTGAGGATAGTGGTGTAAATTAC 866
Query 857 TGGTTGCATAATGGGCATGTCACTATCAATAACGAGAAGATGGCAAAATCAAAGAAAAAC 916
||||||||||||||||||||||||||||| |||||||||||||||||||||||| | |||
Sbjct 867 TGGTTGCATAATGGGCATGTCACTATCAACAACGAGAAGATGGCAAAATCAAAGCACAAC 926
Query 917 TTTAAAACGATTAGAGAAATCACAGCTAGCTACCATCCATTGGCTCTGAGGCACTTCTTG 976
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 927 TTTAAAACGATTAGAGAAATAACCGCTAGCTACCATCCATTGGCTCTGAGGCACTTCTTG 986
Query 977 ATGAGTGCACAGTACCGGTCTCCTCTGAGCTTCTCGGCGTCGCAGCTAGAGAGTTCGTCA 1036
||||||||||||||||||||||||||||| ||| | || |||||||||||||||||||||
Sbjct 987 ATGAGTGCACAGTACCGGTCTCCTCTGAGTTTCACTGCCTCGCAGCTAGAGAGTTCGTCA 1046
Query 1037 GACGCTTTGTATTATGTTTATCAGACTTTACAAGATCTTGATGAAGATCTGTCACCATAT 1096
|| ||||| || |||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 1047 GAAGCTTTATACTATGTTTACCAGACTTTACAAGATCTTGATGAAGGTCTGTCACCATAT 1106
Query 1097 CGAGAAGCATTGTCTGAAGATGGTGGAAAAGCTGAACAGACTCCAGAAGGGAAAGACATC 1156
| ||| |||||||||||||||||||||||| ||||||| ||| ||||||| |||||||||
Sbjct 1107 CAAGACGCATTGTCTGAAGATGGTGGAAAATCTGAACAAACTGCAGAAGGAAAAGACATC 1166
Query 1157 ATTAAGAAGCTAAAAAGTGAGTTTGAATCAAAGATGTTAGACGATTTGAATACCGCCCAT 1216
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1167 ATTAAGAAGCTAAAAACTGAGTTTGAATCAAAGATGTTAGACGATTTGAATACTGCCCAT 1226
Query 1217 ATACTTACTGGTGCTTACCAAGATGCATTGAAATTCATAAACGCTA-ACCGCAGCAAGCT 1275
||||| |||||||||||||||||||||||||||||||| || ||| || |||||||||
Sbjct 1227 ATACTAACTGGTGCTTACCAAGATGCATTGAAATTCATCAATGCTTCACT-CAGCAAGCT 1285
Query 1276 CAAGAAAATGCAGAAGAAGCAGCGAATGTCGATGCTTGTGTCACTAGTTGAGATTGAGAA 1335
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1286 CAAGAAAATGCAGAAGAAGCAGCGAATGTCAATGCTTGTGTCACTCGTTGAGATTGAGAA 1345
Query 1336 AGCAGCAAGGGAAGTTCTTGATGTACTTGGTTTGCTCACTACACTGAGCTATGCCGAGGT 1395
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1346 AGCAGCAAGGGAAGTTCTTGATGTACTTGGTTTACTCACTACACTGAGCTATGCCGAGAT 1405
Query 1396 TTTGAAAGAAATGAAACTAAAAACCCTAATAAGAGCAGAAATGGGAGAAGAAGATATTTT 1455
|||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||
Sbjct 1406 TTTGAAAGAAATGAAACTAAAAACACTAATAAGAGCAGAAATTGGAGAAGAAGGTATTTC 1465
Query 1456 ACGGGAAATAGAAGATAGGATAACAGCGAGGAACAATAAAGATTTTGCGAAAAGTGATGA 1515
| | ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 1466 GCAGTTAATAGAAGAAAGGATAACAGCCAGGAAGAATAAAGATTTCGCGAAAAGTGATGA 1525
Query 1516 GATCAGaaaaaaaCTGTCGAGAAAAGGAATAGCGTTAATGGAT-TTCGGCAAAGAAACTG 1574
||| ||| | |||||| | ||||||||||||||||||||||| || |||||||||||||
Sbjct 1526 GATTAGAGAGAAACTGACAAGAAAAGGAATAGCGTTAATGGACATT-GGCAAAGAAACTG 1584
Query 1575 TATGGAGGCCATGTTTCCCTTCTCAGGCTGATTCCAGCAATTGAGCA-ATGAACAGAGAG 1633
||||||| ||||| ||||||||||||||||||||||||| |||||| | || |||||
Sbjct 1585 TATGGAGACCATGCTTCCCTTCTCAGGCTGATTCCAGCACTTGAGCTTA-GAGCAGAGTC 1643
Query 1634 ATGGAGATAAACAACGATTTCTTCATTTCTCTAACTCTTCTTCTTTAGCCTTTTGTTTGA 1693
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1644 ATGGAGATAGTTAACGGTTTCTTCATTTCTCTAACTCTTCTTCTTTAGCCTTTTGTTTGA 1703
Query 1694 GGCTCTTTCTCTATAACTCTGTTTTTGGAATTGTGCAATGACTTCTAAATATACACTTGT 1753
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1704 GGCTCTTTCTTTATAACTCTGTTTTTGGAATTGTGCAATGACTTCAAAATATACACTTGT 1763
Query 1754 TGCTGTTTGTTGTATTCTTAACATTCACAATGACATTGTAACAATATTGTTACTTTG 1810
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1764 TGCTGTTTGTTGTATTCTTACCATTCACAATGACATTGTAACAATATTGTTACTTTG 1820
> AT3G56300.1 | Symbols: | Cysteinyl-tRNA synthetase, class Ia
family protein | chr3:20880169-20882366 FORWARD LENGTH=1470
Length=1470
Score = 545 bits (295), Expect = 4e-154
Identities = 538/652 (83%), Gaps = 30/652 (5%)
Strand=Plus/Plus
Query 80 GAGATGGAGGCGGAGAAAATGGAATTGA-AGCTCTACAACACGATGACGCAACAGAAGGA 138
|||||||||| ||||||| ||| |||| | | |||||||| ||||| |||| ||||||
Sbjct 7 GAGATGGAGGTGGAGAAACCGGATTTGACA-TTGTACAACACAATGACTCAACTGAAGGA 65
Query 139 AGTGTTGAT--TCCAATCACTCCCGGCAAAATCGGATTATATGTCTGTGGAATCACCGCT 196
||| || || || || | |||||||||||||||| | ||||| || || |||||||||
Sbjct 66 AGT-TT-ATAAGCCGATGAATCCCGGCAAAATCGGAATCTATGTATGCGGTATCACCGCT 123
Query 197 TACGATT-TCAGCCATATCGGCCATGCACGCGCCGCCGTTTCCTTTGATGTTCTTTACAG 255
||||||| | ||||| || ||||| || || |||||||| ||||| || | ||||||||
Sbjct 124 TACGATTAT-AGCCACATTGGCCACGCTCGTGCCGCCGTGTCCTTCGACCTCCTTTACAG 182
Query 256 ATACTTGAA-GCATTTGGGTTATGAAGTTAATTTTGTAC-GGAATTTCACTGATGTTGAT 313
|||||| || ||| ||||||||| |||||| || ||| | | ||||| || |||||||||
Sbjct 183 ATACTT-AAGGCACTTGGGTTATCAAGTTACTTATGT-CAGAAATTTTACAGATGTTGAT 240
Query 314 GACAAGATTATCATTCGTGCTAATGAGAATGGAGAGGACCCGCTAGATTTGAGTAATCGC 373
|||||| || | | || || | | |||| | ||| |||||||||||||||||
Sbjct 241 GACAAGGCTA-AAAAC-TG----TG-G-A--GAGA--AGCCGTTAGATTTGAGTAATCGC 288
Query 374 TTTTGCGAGGAATAT-TTGGTAGATATGGGTGCTCTTCAGTGCCTCCTTCCCACCCACCA 432
||||||||||| ||| || ||||||||| ||||||||||||||||||||||||||||||
Sbjct 289 TTTTGCGAGGAGTATCTT-TTAGATATGGCTGCTCTTCAGTGCCTCCTTCCCACCCACCA 347
Query 433 GCCTCGTGTCAGCGAACATATGGACCACATTATTAAGATGATAGAAAAGATCATTGAGAA 492
|||||||||||| || |||||||| || || |||||||||||||||||||||||||||||
Sbjct 348 GCCTCGTGTCAGTGATCATATGGAACAGATCATTAAGATGATAGAAAAGATCATTGAGAA 407
Query 493 AG-ATTGTGGGTATGTTGTGGAAGGGGATGTATTCTTCTCCGTTGACAAATCGCCAAATT 551
| || ||||||||| ||||| || ||||| |||||||| || |||||||| || | ||
Sbjct 408 TGGAT-GTGGGTATGCTGTGGGTGGTGATGTGTTCTTCTCAGTGGACAAATCACCGAGTT 466
Query 552 ATGGTAAATTATCTGGGCAATTGTTGGAACATACACGAGCTGGTGAGCGTGTTGCTGTTG 611
||||| | |||||||| ||| | |||| ||||| | ||||||| |||||||||||||||
Sbjct 467 ATGGTCAGTTATCTGGTCAACGGCTGGATCATACTCAAGCTGGTAAGCGTGTTGCTGTTG 526
Query 612 ATTCGAGAAAGCGTAACCCCGCTGATTTTGCATTATGGAAGGCGGCAAAGCCTGATGAGC 671
| || || |||||||| || ||||| ||||||||| ||||||| ||||| ||| ||| |
Sbjct 527 ACTCAAGGAAGCGTAATCCTGCTGACTTTGCATTACGGAAGGCTGCAAAATCTGGTGAAC 586
Query 672 CAAGTTGGGAGAGCCCGTGGGGTCCA-GGAAGACCAGGATGGCACATCGAGT 722
|||||||||||||||| ||||||| | |||||||||||||||||||||||||
Sbjct 587 CAAGTTGGGAGAGCCCTTGGGGTC-ATGGAAGACCAGGATGGCACATCGAGT 637
Score = 198 bits (107), Expect = 1e-49
Identities = 178/212 (84%), Gaps = 6/212 (3%)
Strand=Plus/Plus
Query 1241 GCATTGAAATTCATAAACG-CT-AACCGCAGCAAGCTCAAGAAAATGCAGAAGAAGCAGC 1298
|||||||||||||| |||| | || | | |||||||||||||||||||||||||||||
Sbjct 1021 GCATTGAAATTCATCAACGTTTCAATCTC--CAAGCTCAAGAAAATGCAGAAGAAGCAGC 1078
Query 1299 GAATGTCGATGCTTGTGTCACTAGTTGAGATTGAGAAAGCAGCAAGGGAAGTTCTTGATG 1358
| |||||| || | |||||||| || ||| ||||||| |||| ||||||||||||||||
Sbjct 1079 GGATGTCGCTGGTAGTGTCACTGGTCGAGGTTGAGAAGGCAGTGAGGGAAGTTCTTGATG 1138
Query 1359 TACTTGGTTTGCTCACTACACTGAGCTATGCCGAGGTTTTGAAAGAAATGAAACTAAAAA 1418
| |||||||||||||| || || ||||| | ||| |||||||||| ||||||| ||||
Sbjct 1139 TGCTTGGTTTGCTCACGACTCTAAGCTACGGTGAGCTTTTGAAAGACATGAAAC-AAAAG 1197
Query 1419 CCCT-AATAAGAGCAGAAATGGGAGAAGAAGA 1449
| | || |||||||| |||||||||||||||
Sbjct 1198 GCATTAACAAGAGCAGGAATGGGAGAAGAAGA 1229
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89557772280
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5