BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494096

Length=469
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38760.1 | Symbols:  | Late embryogenesis abundant protein (...   597    3e-170


> AT5G38760.1 | Symbols:  | Late embryogenesis abundant protein 
(LEA) family protein | chr5:15524178-15524977 FORWARD LENGTH=509
Length=509

 Score =  597 bits (323),  Expect = 3e-170
 Identities = 366/386 (95%), Gaps = 5/386 (1%)
 Strand=Plus/Plus

Query  1    AATCCCATATTCACACTCTTATTCAAAGCAAAA-ACTTATCTTTCTTTTCACTAAAGCTA  59
            |||| |||| ||||||| |||||||||| |||| ||||| ||||||||||||||||||||
Sbjct  6    AATCTCATAATCACACTTTTATTCAAAG-AAAATACTTAACTTTCTTTTCACTAAAGCTA  64

Query  60   TTCGAAAATGTCAAGCAACTCCCAGAACATAAGCTTCCAAGCCGGCCAGGCCAAAGGCCA  119
            |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct  65   TTCGAAAATGTCAAGCAACTCCCAGAACATTAGCTTCCAAGCTGGCCAGGCCAAGGGCCA  124

Query  120  AACTCAGGAGAAGGCTAGCACCATGATGGACAAGGCTAGCAATGCTGCTCAATCTGCCAA  179
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct  125  AACTCAGGAGAAGGCTAGCACCATGATGGACAAGGCTAGCAATGCTGCCCAATCTGCCAA  184

Query  180  GGAGTCTCTCCAAGAGACCGGCCAGCAGATTAAGGAGAAGGCACAAGGAGCTACCGAATC  239
            |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  185  GGAGTCTCTCAAAGAGACCGGCCAGCAGATTAAGGAGAAGGCACAAGGAGCTACCGAATC  244

Query  240  AGTGAAGAATGCGACCGGCATCAACAAATGAAGACAATAATCATATGATTCATTATGCTA  299
            ||||||||| || |||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct  245  AGTGAAGAACGCCACCGGCATGAACAAATGAATACAATAATCATATGATTCATTATGTTA  304

Query  300  TTTTTCTTTTCACGAATAAAAACAATAATTCATTTTTTGAAACCTAAAGATTAGGTTCAA  359
             |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  305  -TTTT-TTTT-ACGAATAAAAACAATAATTCATTTTTTGAAACCTAAAGATTAGGTTCAA  361

Query  360  CGGTTTGATTATTCAAACTGTTGTTT  385
            ||||||||||||||| ||||||||||
Sbjct  362  CGGTTTGATTATTCAGACTGTTGTTT  387



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22303961268


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5