BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494098
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38720.1 | Symbols: | unknown protein; Has 13419 Blast hits... 1548 0.0
> AT5G38720.1 | Symbols: | unknown protein; Has 13419 Blast hits
to 9093 proteins in 698 species: Archae - 38; Bacteria -
1038; Metazoa - 4949; Fungi - 1086; Plants - 485; Viruses -
44; Other Eukaryotes - 5779 (source: NCBI BLink). | chr5:15508244-15510559
REVERSE LENGTH=1181
Length=1181
Score = 1548 bits (838), Expect = 0.0
Identities = 1095/1213 (90%), Gaps = 41/1213 (3%)
Strand=Plus/Plus
Query 1 GTGGCCTGACTAATCCC-AATTTTTCCGAGAGCGTCGACGCCGATAATCGCCGACAGAGT 59
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 1 GTGGCCTGACTAATCCCTAATTTTTCCGAGAGCGTCGACGCCGACAATCGCCGACAGAGT 60
Query 60 TTTTGCTTCTCACGAGATAGAAAGAAGATGAAGGAGACGAGAAAGCTAAAGAAGACAAAT 119
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 61 TTTTGCTTCTCACGCGATAGAAAGAAGATGAAGGAGACGAGAAAGCTGAAGAAGAGTAAT 120
Query 120 CTCCCTGAAGGAGAAACTGATGGAAAGAGAGTTGGCaaaaaaaTTCAGAGGAAGAAGAAA 179
|||||| || || | | | || | ||||| |||||||||||||||||||||||
Sbjct 121 CTCCCT-AA--AG--A---A--G-AA-ACTGTTGGGAAAAAAATTCAGAGGAAGAAGAAT 168
Query 180 GTTCAAGTGAGCAATGTCGAATTAAGCGAGCAAT-CTCACGACACGCAACAAGCTAATTC 238
| |||||||||||||||||||||||||| || |||| | | || || ||| |||
Sbjct 169 GAGAAAGTGAGCAATGTCGAATTAAGCGAG-GATCCTCA-GGC-TGC-AC-AGC---TTC 220
Query 239 aagtgagaaaccgaaaagaaagaaggttgaattgaagaagaagattcagaagagtaagga 298
|| | ||| | ||| |||| ||| | | ||||||||||||||| |||||||
Sbjct 221 AA--GCTAAATC---AAGTGAGAA-ACCCAATAG-A-AAGAAGATTCAGAAGGGTAAGGA 272
Query 299 aaTAAATAGCTCTCCAGCTGATGGGAAGCTCAGTGGGAAGATGAAGAAGAGAAAAGAGAA 358
|||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 273 AATAAAAAGCTCTCCAGCTGATGGTAAGCTGAGTGGGAAGATGAAGAAGAGAAAAGAGAA 332
Query 359 AGTAGGCAATGTTGATATAAGCGAACCGAATCTGGAAGCTATTTCAACTGAGATAGTCAA 418
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||
Sbjct 333 AGTAGGCAATGTTGATATAAGCGAACCGATTCTGGAAGCTATTTCAACTGAGAAAGTAAA 392
Query 419 AGGAAAGAAGGGCAAAATGAATAAGACTAAGAAGAAAAGGAAGGCCGAGGAAATAATTAG 478
|| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 393 AGAAAAGAAGGGCAAAATGAACAAGACTAAGAAGAAAAGGAAGGCCGAGGAAATAACTAG 452
Query 479 CGCTACAGTTGAAGCTGATCATCTGAAAGGAGAAGGCAAGTCTAAGAAATCAAATAAGAA 538
|| |||| ||| | |||||||| ||||| |||||| ||||||||||||||||||
Sbjct 453 ATCTTCAGTCGAA---G---ATCTGAAAAGAGAAAGCAAGTTTAAGAAATCAAATAAGAA 506
Query 539 GAAAAAGATGGACATGACCTCTACGAAAGAGAACAAAATTGAAGAGGAGGAAGATGTTTA 598
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 507 GAAAAAGATGGACATGACCTCTAAGAAAGAGAACAAAATTGAAGAGGAGGAAGATGTTTA 566
Query 599 TCAAATTTCTTCAGGCGATGAGGATTGCACAAGGGGAATGAAAAAATGGGTTACTAATTA 658
||||||||||||||||||||||||||||||||||||||||||||| ||||||| | ||||
Sbjct 567 TCAAATTTCTTCAGGCGATGAGGATTGCACAAGGGGAATGAAAAAGTGGGTTAGTGATTA 626
Query 659 CTATGAGGGTAGACCTGGTTTAGATGAGCTGCAAAAGAGAATCGATGACTTCATGACTGC 718
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 627 CTATGAGGGTAGACCTGGTTTAGACGAGCTCCAAAAGAGAATCGATGACTTCATGACTGC 686
Query 719 TCACGATGAACGCCTTGAACAGGAGAAACAAGATAGAGAAGCTAAAGCTGCAGAAGGTGG 778
||| || |||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 687 TCATGAAGAACGCCTTGAACAGGAGAAACAAGACAAAGAAGCTAAAGCTGCAGAAGGTGG 746
Query 779 ATGGACTGTGGTCGTGCATCACAAAGGAAGGAAAAAGACAACAGAAACTGAATCTGGAAC 838
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||
Sbjct 747 ATGGACTGTGGTCGTGCATCACAAAGGAAGGAAAAAGACAACAGAATCTGAAACCGGAAC 806
Query 839 AGCGGTTGGATCTTTTTCTCAGGCTGCTTTAGAGGATAAAATCTCTAAGAAGAAACAGAG 898
||| |||||||||||||||||||||||||| |||||||| ||| |||| |||||||||||
Sbjct 807 AGCCGTTGGATCTTTTTCTCAGGCTGCTTTGGAGGATAAGATCGCTAAAAAGAAACAGAG 866
Query 899 TGAGCCCGTCGCTCATGGTTTCTACCGTTTCCAAAGGCGAGAAGCACAACTTAATGAAAT 958
|||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||| |
Sbjct 867 TGAGCCTGTCGCTCATGGTTTCTACCGTTTCCAAAGGCGAGATGCACAACGCAATGAACT 926
Query 959 CTTGTCGCTTCAGAGTAAGTTCGAGCAAGACAAGAAGAGGATACAACAACTTCGGGCCGC 1018
|||| |||||||||||||||||||| |||||||||||||||||||||||||||| || ||
Sbjct 927 CTTGGCGCTTCAGAGTAAGTTCGAGGAAGACAAGAAGAGGATACAACAACTTCGAGCTGC 986
Query 1019 TCGTAGGTTTAAGCCTTTCTAAGGAAGAATACAT-CTGCATGAAAAA-CATGAGCTTTGT 1076
||||||||||||||||||||||||||||| |||| |||| ||||||| ||||||||||||
Sbjct 987 TCGTAGGTTTAAGCCTTTCTAAGGAAGAACACATTCTGCTTGAAAAAACATGAGCTTTGT 1046
Query 1077 GGGTTCAGACTCTAATGAAGCTCATGAGCAATAGCATGAATGTGTTATTATGATCAAGTT 1136
||||||||||||| || |||||||||||||||| |||||||||||| |||||||||| ||
Sbjct 1047 GGGTTCAGACTCTGATTAAGCTCATGAGCAATATCATGAATGTGTT-TTATGATCAAATT 1105
Query 1137 TTGTAATTGACAATTTCAGGCTGATAAACAAAAAGAAATATAATTTTTT--CCCTTGGAA 1194
||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1106 TTGTAATTGACCATTTCAGGCTGATAAACAAAAAGAAATATAATTTTTTTTCCCTTGGAA 1165
Query 1195 CATTACATTGAAT 1207
||||| |||||||
Sbjct 1166 CATTAGATTGAAT 1178
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59286843645
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5