BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494099
Length=1689
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38710.1 | Symbols: | Methylenetetrahydrofolate reductase f... 2412 0.0
> AT5G38710.1 | Symbols: | Methylenetetrahydrofolate reductase
family protein | chr5:15501245-15504109 FORWARD LENGTH=1736
Length=1736
Score = 2412 bits (1306), Expect = 0.0
Identities = 1568/1693 (93%), Gaps = 24/1693 (1%)
Strand=Plus/Plus
Query 1 acaaaccccaacacacaaaaacgcttgtgaacaa-aaaaagagaaaccaaaaaaccgaac 59
||||||||||||||||||||||||||||||| || ||||||||||||| |||||| ||||
Sbjct 1 ACAAACCCCAACACACAAAAACGCTTGTGAAAAATAAAAAGAGAAACCCAAAAACAGAAC 60
Query 60 aaaagaaagaaaacaaaacGTTCTTAA-AGTTTAAATGGCAAACCGTTTCCTCCGACCAA 118
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 AAAAGAAAGAAAACAAAACGTTCTTAAGAGTTTAAATGGCAAACCGTTTCCTCCGACCAA 120
Query 119 ACCTCATCCACCGTTTCTCCACCGTGAGTCCCGTCGGTCCTCCGACCACCGTCATCCCGG 178
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 121 ACCTCATCCACCGTTTCTCCACCGTGAGTCCCGTCGGTCCTCCGACCACCATCATCCCAG 180
Query 179 AGATTCTTTCCTTTGACCAACCAAAACAAGACGTTGACCTAGATCTCTCCGACCAAGCTC 238
| || |||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||
Sbjct 181 AAATCCTTTCCTTTGACCAACCAAAACCAGAAGTTGATCTAGATCTCTCCGACCAAGCTC 240
Query 239 GACTCTTTGCTTCTGTCCCAATCTCCACCCTCCTTCGCTCAACCGCAGTTCTTCATGCTA 298
|||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
Sbjct 241 GACTCTTTGCTTCTGTCCCAATCTCCACCCTCCTCCGCTCAACCGCAATTCTCCATGCCA 300
Query 299 CGTCCATAGGCCCTATGGTAGATCTTGGCTCATGGCTCATGAGTTCCAAGCTCATGGACA 358
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 CGTCCATAGGCCCTATGGTCGATCTTGGCTCGTGGCTCATGAGTTCCAAGCTCATGGACA 360
Query 359 CGACCGTTACACGCGATCTAATACTCCGTGTCGTAAAAGGAACGTTTTATGACCATTTCT 418
|||||||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||
Sbjct 361 CGACCGTTACACGCGATCTAGTACTCCGTATCGTGAAAGGAACGTTTTACGACCATTTCT 420
Query 419 GCGCCGGCGAAGATGCGGCTGCCGCTGCAAGGCGCGTGAGTAGCATGTATGAGTCGACGG 478
||||||| ||||| ||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 421 GCGCCGGTGAAGACGCGGCTGCCGCAGCAAGGCGCGTGAGTAGCGTGTATGAGTCGACGG 480
Query 479 GACTTAAAGGTATGTTGGTGTATGGCGTTGAACATGCCGAAGACAGTGGCGCGTGTGATG 538
|||||||||||||||| ||||| ||||| ||||| || |||||| ||||||| |||||||
Sbjct 481 GACTTAAAGGTATGTTAGTGTACGGCGTAGAACACGCTGAAGACGGTGGCGCATGTGATG 540
Query 539 AAAACATTCAGAAATTCATTGAAACCGTCGAAGCTGCTAAAAGCCTACCTACGTCTCACT 598
|||||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 541 AAAACATTCAAAAATTCATTGAAACCGTCGAAGCTGCTAAAACCCTACCTTCGTCTCACT 600
Query 599 TAAGCTCAGTGGTGATCAAAATCACAGCGATTTGTCCAATGAATCTCCTGAAACGAGTTA 658
|||||||||||||| |||| |||||||||||||||||||||||| |||| ||||| ||||
Sbjct 601 TAAGCTCAGTGGTGGTCAAGATCACAGCGATTTGTCCAATGAATGTCCTAAAACGGGTTA 660
Query 659 GTGATTTGCTCCGGTGGCAATACAAGAACCCTAATTTCAAACTTCCATGGAAACTCAATT 718
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GTGATTTGCTTCGGTGGCAATACAAGAACCCTAATTTCAAACTTCCATGGAAACTCAATT 720
Query 719 CATTTCCGGTTTTCTCCGGTTTAAGTCCTCTCTACCACACTACTTCTGAACCGGAACCAT 778
||||||||||||||||||| ||||||||||| |||||||| || ||||||||||||||||
Sbjct 721 CATTTCCGGTTTTCTCCGGCTTAAGTCCTCTGTACCACACAACGTCTGAACCGGAACCAT 780
Query 779 TAACCGCAGAGGAAGAACGAGAGCTAGAAAAAGCTCACGAACGCCTCAAATCTGTCTGTA 838
|||||| |||||||||||||||||| ||||||||||| |||||||||||||| || |||
Sbjct 781 TAACCGTAGAGGAAGAACGAGAGCTTGAAAAAGCTCATGAACGCCTCAAATCCGTGTGTC 840
Query 839 AAAGATGTCAAGAATCGAACGTACCGTTACTAATCGATGCGGAAGACACAATTCTCCAAC 898
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||
Sbjct 841 TTAGATGTCAAGAATCGAACGTACCGTTACTAATTGATGCCGAAGACACCATTCTCCAAC 900
Query 899 CGGCGATTGATTACATGGCTTATTGGTCGGCGATTATGTTCAATTCTGACAAAGACCGAC 958
| || || ||||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 901 CAGCAATCGATTACATGGCGTATTGGTCGGCGATTATGTTCAATTCGGATAAAGATCGAC 960
Query 959 CTATAGTTTACAACACGATTCAAGCCTACTTGAAAGATGCAGGAGAGAGATTGCATTTGG 1018
|||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 961 CTATAGTTTACAACACGATTCAAGCCTACTTGAAAGATGCTGGAGAGAGATTACACTTGG 1020
Query 1019 CTTTACGAGAATCTGAGAAAATGAATGTTCCTATTGGGTTTAAATTGGTCAGAGGTGCTT 1078
|||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1021 CTTTACGAGAGTCAGAGAAAATGAATGTTCCTATTGGGTTTAAATTGGTGAGAGGTGCTT 1080
Query 1079 ATATGTCTAGTGAAGCTAGGTTAGCAGATTCCTTGGGTCACAAGTCACCGGTCCATGACA 1138
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| || ||||
Sbjct 1081 ATATGTCTAGTGAAGCTAAGTTAGCAGATTCCTTGGGTTACAAGTCACCGGTTCACGACA 1140
Query 1139 CAATTCAAGATACACACGATTGCTACAATGACTGTATGAGTTTCCTTATGGAGAAAGCCT 1198
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 CAATTCAAAATACACATGATTGCTACAATGACTGTATGAGTTTCCTTATGGAGAAAGCCT 1200
Query 1199 CAAATGGATCAGGCATTGCGGTCATTCTAGCGACGCATAACTCCGACTCCGGTAAACTAG 1258
||||||||||||||||||||||||||||||| ||||||||| | ||||| ||||||||||
Sbjct 1201 CAAATGGATCAGGCATTGCGGTCATTCTAGCTACGCATAACACAGACTCGGGTAAACTAG 1260
Query 1259 GGGCAAGGAAAGCAAGTGAGCTAGGGATCGATAAAGAAAACGGGAGGATCGAGTTTGCAC 1318
||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||| |
Sbjct 1261 GGGCAAGAAAAGCAAGTGAGCTAGGGATCAATAAAGAAAACGGGAAGATCGAGTTTGCGC 1320
Query 1319 AGCTTTACGGAATGTCGGATGCATTATCTTTCGGATTGAAAAGGGCCGGTTTCAATGTGA 1378
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1321 AGCTTTACGGGATGTCGGATGCGTTATCTTTTGGATTGAAAAGGGCCGGTTTCAATGTGA 1380
Query 1379 GCAAGTACATGCCATACGGGCCGGTCGATACTGCGATTCCATACCTTATCCGGCGGGCAT 1438
| ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1381 GTAAGTACATGCCATACGGGCCGGTTGATACTGCAATTCCATACCTTATCCGGCGGGCAT 1440
Query 1439 ATGAGAACCGTGGTATGATGTCTACAGGTGCTCTAGACCGCCAACTTATGAGGAAGGAGC 1498
||||||| || ||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1441 ATGAGAATCGGGGTATGATGTCCACAGGTGCTTTAGACCGCCAACTTATGAGGAAGGAGC 1500
Query 1499 TTAAGAGAAGAGTTATGGGTTGGTGATTGGTGAAGACGGAAGATATATAAATGTGCTTCA 1558
|||||||||||||||||| ||||||| | | | ||| |||| | | |||| ||||
Sbjct 1501 TTAAGAGAAGAGTTATGGCTTGGTGAA-GAC-AC-A-GGA-GATA-A-A--TGTGTTTCA 1551
Query 1559 TTCATGGAATAATTATAAGGCAAATATAGATTTTAAAATTATATA-AA-TGGAGTAGCAA 1616
||||||||||| | ||||||||||||||||||||||||||| || |||||||||||
Sbjct 1552 TTCATGGAATA-T-----GGCAAATATAGATTTTAAAATTATATATAAATGGAGTAGCAA 1605
Query 1617 AATATCCACAAATGTATACAGTAATTCCTTAGTGATCAATGATAATGTAATTTGCATATT 1676
|||||||||||||||||| | | | | |||||||||||||| |||| ||||||||||||
Sbjct 1606 AATATCCACAAATGTATA-A-T--T-CATTAGTGATCAATGAAAATGCAATTTGCATATT 1660
Query 1677 TCATTTTTTGCTT 1689
|||||||||||||
Sbjct 1661 TCATTTTTTGCTT 1673
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83483506335
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5