BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494100
Length=2077
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38690.1 | Symbols: | Zinc-finger domain of monoamine-oxida... 1971 0.0
> AT5G38690.1 | Symbols: | Zinc-finger domain of monoamine-oxidase
A repressor R1 protein | chr5:15479177-15483250 REVERSE
LENGTH=2224
Length=2224
Score = 1971 bits (1067), Expect = 0.0
Identities = 1261/1354 (93%), Gaps = 15/1354 (1%)
Strand=Plus/Plus
Query 732 GAAGTTACCAAGAAAGTATTGGCAGAAGGAAAAAAGAAGAAGACTACTA-CTAAAGATAT 790
||||||| ||||||||||||||||||||||||||||||||||||||| | | |||| |||
Sbjct 877 GAAGTTATCAAGAAAGTATTGGCAGAAGGAAAAAAGAAGAAGACTAC-AGCAAAAGGTAT 935
Query 791 CAAGGAAAACAACGTAGTGGATAAAATCAAAAGAATCAAACCTGCTCTCAAAAAG-AA-A 848
|||||||||||| |||| ||| |||||||||||||| |||||||||||||||||| || |
Sbjct 936 CAAGGAAAACAATGTAGCGGAGAAAATCAAAAGAATTAAACCTGCTCTCAAAAAGAAAGA 995
Query 849 -GAGGA--A-GATGAGGTTAAACTACCTCAGGGCAATAGCTCAATTACTGTATCTGGCAT 904
||||| | | |||| ||||| ||||||||||||||| |||||||||||| || |||||
Sbjct 996 GGAGGATCAGGTTGAGATTAAAATACCTCAGGGCAATATCTCAATTACTGTTTCAGGCAT 1055
Query 905 TGACTTGGCTCCTGAAGATGCTGGAAATGTATTTCAGTTTTTGGAGTTTTGTTCAGCTTT 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 TGACTTGGCTCCTGAAGATGCTGGAAATGTATTTCAGTTTTTGGAGTTTTGTTCAGCTTT 1115
Query 965 TGGGAAGGCACTTGATTTGAGGAAAGGGCAAGCTGAATGTGTTATTCGTGAAATGTTATC 1024
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 1116 TGGGAAGGCACTTGATTTGAGGAAAGGACAAGCTGAATGTGTTATACGCGAAATGTTATC 1175
Query 1025 CGGGAGAAGCAAAAGAAGACAACAATATTCCACACTCACCCAGATGATAATCCAGCTACT 1084
|||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||
Sbjct 1176 TGGGAGAAGCAAAAGAAGACAACAATATTCCACTCTCACACAGATGATAATCCAACTACT 1235
Query 1085 TACTGTGATATTAGAGGATAAAGGAGAAACATCGGTTTTCCTGAGTGCAACTGATGCTAG 1144
|||||||||||||||||||| |||||||||||| |||| |||||||||||||||| ||||
Sbjct 1236 TACTGTGATATTAGAGGATAGAGGAGAAACATCCGTTTGCCTGAGTGCAACTGATCCTAG 1295
Query 1145 TTGGTTCACTACAATTGGAGAATGTCTTTCGGAATCAGAAGTTAAGCTCGATGATTTCCC 1204
|||||||||||| |||||||||||||| |||||||||||||| ||||| |||||||||||
Sbjct 1296 TTGGTTCACTACGATTGGAGAATGTCTCTCGGAATCAGAAGTAAAGCTAGATGATTTCCC 1355
Query 1205 TCCTGAAATGTTTGAAAAAGGCCTTTCTCAGTATGAGAAGTTGAATTCATCAAAAAGGCT 1264
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1356 TCCTGAAATGTTTGAAAAAGGCATTTCTCAGTATGAGAAGTTGAATTCATCAAAAAGGCT 1415
Query 1265 TAAGCTTTTGAATTTCCTATGCGATGAAACGCTTGGCACATCGGTGATGAGAAATTGCAT 1324
|||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1416 TAAGCTTTTGAATTTCTTATGCGATGAAACGCTTGGCACATTGGTGATGAGGAATTGCAT 1475
Query 1325 TGATAGCCAAAATATTGAATCTGTTgaaaggaaaaaggaagcaaaagaaaagatcattgc 1384
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||
Sbjct 1476 TGATAGCCAAAATATTGAATCTGTTGAAAGGAAAAAAGAAGCAAAAGAAAAGATCAATGC 1535
Query 1385 agcaaaagataaggagaaaCAACTCAAGCAGAAATTGCAAGATGAGTTGGCTCAAGCAGT 1444
|||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 1536 TGCAAAAGATAAGGAGAAACAGCTGAAGCAGAAATTGCAAGATGAGTTGGCTCAAGCCGT 1595
Query 1445 AAAAGAGAAAAACGGAATTCCATTGTTGATAACAGAACGTGATGCAATTGTATCGCGAAT 1504
||||| |||||||| |||||||||||||||||||||| |||||| ||||||||||| ||
Sbjct 1596 AAAAGCCAAAAACGGGATTCCATTGTTGATAACAGAACATGATGCGATTGTATCGCGGAT 1655
Query 1505 AAATGCTGAAACTAAAGAAGTTTATTCTGAAATGCAAAACGCAATAGACATGCTCTCCAA 1564
|||||| |||||| |||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1656 AAATGCAGAAACTCAAGAAGTTTATTCTGAAATGCAAAACGCAATAGACATGCTATCTAA 1715
Query 1565 AAAGAGTCAAGGAAGTGATGATGCTGTTAGAACCAACCCGGTTGAATTGGATGACAATGG 1624
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1716 AAAGAGTCAAGGAAGTGATGATGCTGTTAGAACCAACCCGGTCGAATTGGATGACAATGG 1775
Query 1625 TCTTATATTCTGGAGATTGAAGTCTTACAATGATGAGCCAAACATTTTGCTTCAAGATTT 1684
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1776 TCTTATATTCTGGAGATTGAAGTCTTACAATGATGAGCAAAACATTTTGCTTCAAGATTT 1835
Query 1685 AGGAAGCTGGAATGAAGTATGTCCTCATGAAAAATGGTTTTCCTTCAACTCTGAGCAAAA 1744
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1836 AGGAAGCTGGAATGAAGTATGTCCTCATGAAAAATGGTTTTCCTTCAGCTCTGAGCAAAA 1895
Query 1745 ACCAGAGATAGAGAAATACATCTCTTCCATAAGGATGAAACAGCTTGGAGCACAAAAGAA 1804
|||||||||||||||||||||||||| |||||||||||||| | || ||||||||||||
Sbjct 1896 ACCAGAGATAGAGAAATACATCTCTTTCATAAGGATGAAACGGGTTCAAGCACAAAAGAA 1955
Query 1805 TGCAAATACTATTATTACTTAGCAATGATGATTCTCTTTGGCTGCGAGCACATAAGAACA 1864
||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1956 TGCAAGTACTATTATTACTTAGTGATGATGATTCTCTTTGGCCGCGAGCACATAAGAACA 2015
Query 1865 TGATTCTGACAAGCGAAGAGGTAAAAGGCTGACTCAAAACTCTTTGACATGTGATTTTGA 1924
||| ||||| | || ||||||||||||||||||||||||||||||| || || | ||
Sbjct 2016 TGACTCTGATATGCAAAGAGGTAAAAGGCTGACTCAAAACTCTTTG----GTAATGT-GA 2070
Query 1925 ATCGCATTGAGTATTGCTTTATGAACAACCCAAAAAGCTCTGTTTGAATGA-TAATGTTC 1983
||||||||||||||| ||||||||||| ||||||||||||||||| || | ||||||||
Sbjct 2071 TTCGCATTGAGTATTGATTTATGAACAAACCAAAAAGCTCTGTTTGTAT-ACTAATGTTC 2129
Query 1984 ATTCGGATTCCCTAAAGTATGAAACGATCTTTGATAGTTAATGAGTTGTTTTTATGTTTC 2043
|||||||||| | ||| |||| ||||||||||||||||| || |||||||| || |||||
Sbjct 2130 ATTCGGATTCTCGAAACTATGGAACGATCTTTGATAGTTTATCAGTTGTTTGTAAGTTTC 2189
Query 2044 AAGAATTTCTGAAAAGTGAACAAACAGATTCTAT 2077
||||||||||||||||||||||||||||||||||
Sbjct 2190 AAGAATTTCTGAAAAGTGAACAAACAGATTCTAT 2223
Score = 950 bits (514), Expect = 0.0
Identities = 587/623 (94%), Gaps = 2/623 (0%)
Strand=Plus/Plus
Query 71 TTTGGTTATGGCGGTGGTGAGTAAGAATCAGACCCAACAACAAACACCAAATCCTGGCGG 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 252 TTTGGTTATGGCGGTGGTGAGTAAGAATCAGACCCAACAACAAACACCAAATCCTGGCGG 311
Query 131 TGGTGAATCAAGAATCGAAGATTCCACTATTGGAAAGACTTGTCACCAGTGTCGACAAAA 190
||||| |||||| |||||||||||||| | ||||||||||||||||| |||||||||||
Sbjct 312 TGGTGTATCAAGGATCGAAGATTCCACCAACGGAAAGACTTGTCACCAATGTCGACAAAA 371
Query 191 GAGAACGGATCTTGTTGGATCCTGCGTGACCAAGAAGAAAGACAAAACATGTCCGATTAA 250
||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||
Sbjct 372 GAGAACGGATCTTGTTGGATCCTGCGTGACCAAGAAGAAAGACAAGACTTGTCCTATTAA 431
Query 251 GTTATGTACCAAGTGCATATTGAACAGGTATGGAGAGAATGCAGAAGAGGTTGCGTTGAA 310
|||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct 432 GTTATGCACCAAGTGCATATTGAACAGGTATGGGGAGAACGCACAAGAGGTTGCGTTGAA 491
Query 311 GAAAGATTGGATTTGTCCTAAGTGTAGAGGAAACTGCAATTGTAGCTATTGCATGAAGAA 370
||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||||||
Sbjct 492 GAAGGATTGGATTTGTCCCAAGTGTAGAGGAAACTGCAACTGTAGCTACTGCATGAAGAA 551
Query 371 ACGAGGCCAAAAGCCTACCGGGATATTAGTACACACTGCaaaaaaaaCTGGGTTCTCTTC 430
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 552 ACGAGGCCAAAAGCCTACCGGGATATTAGTACACACTGCTAAAAAGACTGGCTTCTCTTC 611
Query 431 TGTATCCGAGCTTCTTAAAACTAGTGGTTCTGACAAATATTTTTATACAAAGAAGGTGAA 490
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 612 TGTCTCAGAGCTTCTTAAAACTAGTGGTTCTGACAAATATTTTTATACAAAGAAGGTGAA 671
Query 491 ACCGGAAGGTGGTGTTGTAGCTTT-ACCACTGAAACTTGACCAGGAGAACTCTATTGAAC 549
||||||||||| |||||||| ||| |||||||||||||||||||||||| ||||||||||
Sbjct 672 ACCGGAAGGTGTTGTTGTAG-TTTCACCACTGAAACTTGACCAGGAGAATTCTATTGAAC 730
Query 550 AAAAACATGTTAGTATTAAAAAATCGAGAAAAACTAAACGGGAAGAGCTTAAGGATTTAA 609
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 731 AAAAACATGTTAGTATTAAAAAATCGAGAAAAACTAAACGGGAAGAGCTCAAGGATATAA 790
Query 610 ACAACGGCTGTAGCGATGAGAATGCTGTGGTGAAAAAGAGCAGTCCAAAAAAGATCAAGA 669
|||||||||| ||| ||||||||| ||||||||||||||| | |||||| |||||||||
Sbjct 791 ACAACGGCTGCAGCAATGAGAATGTTGTGGTGAAAAAGAGTAATCCAAAGAAGATCAAGC 850
Query 670 TTTCTGATTCTGTTCATGCGACA 692
|||||||||| ||||||||||||
Sbjct 851 TTTCTGATTCCGTTCATGCGACA 873
Score = 108 bits (58), Expect = 3e-22
Identities = 69/74 (93%), Gaps = 2/74 (3%)
Strand=Plus/Plus
Query 1 CATAAAACTCGAGTCCAGTGATAAAC-AAAACTCATATACCCATAAACTCATTTTTGCGA 59
|||||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||
Sbjct 156 CATAAAACTCGAGTCCAGTGATAAACAAAAACTCAGATACCCATAAACT-AATTTTCCGA 214
Query 60 ATCAAATCAATTTT 73
||||||||||||||
Sbjct 215 ATCAAATCAATTTT 228
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 102961317795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5