BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494103
Length=929
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38660.1 | Symbols: APE1 | acclimation of photosynthesis to ... 1393 0.0
> AT5G38660.1 | Symbols: APE1 | acclimation of photosynthesis to
environment | chr5:15473109-15475552 REVERSE LENGTH=1092
Length=1092
Score = 1393 bits (754), Expect = 0.0
Identities = 878/937 (94%), Gaps = 11/937 (1%)
Strand=Plus/Plus
Query 1 AAAGATACACagagagagaagagaagaag-agaaAATGGGAACTATATCGGCAGCTCCGG 59
||||||||||||||||||||||||||| | ||||||||||| ||||| ||| ||||||||
Sbjct 21 AAAGATACACAGAGAGAGAAGAGAAGAGGAAGAAAATGGGATCTATAACGGTAGCTCCGG 80
Query 60 GAACCACCGTCTTATTCTCCAATCTCCGTCGTGACAGTTTTTACAATCGTCGCCATGAGA 119
||||||||||||||||||||| || || | | | | | ||| | ||||||||||||||
Sbjct 81 GAACCACCGTCTTATTCTCCAGTCGGCGGC-T-AGA-TCTTTGCGGTCGTCGCCATGAGA 137
Query 120 ACCTATCCGTCGTTTCGTCCTCACAACCGTCTCTGATGCCAAAGCAGAGATGGCTTTACG 179
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 138 ATCTATCCGTCGTTTCGTCCTCACAACCGTCTCTGATGCCAAAGCAGAGATGGCTTTATA 197
Query 180 TTCCCGAGACGAGGTTGAGAAGAGAGATTCTAAAGCTCGATTTCATTGCAAGAGCTGCTG 239
|||||||||||||||||| ||||||| || ||||||||||| || | | |||||||||||
Sbjct 198 TTCCCGAGACGAGGTTGAAAAGAGAGGTTTTAAAGCTCGATGTCGTCGGAAGAGCTGCTG 257
Query 240 ATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAACCCTAATCCCTGATGATG 299
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 258 ATTCCACGAGCTCTTCTCCATCAGTAGCTTCCGGTGATAGAACCTTAATTCCTGATGATG 317
Query 300 AATTCACTTTAGCCAAGATTTCATTTGGTGTTATTGGGCTAGGTCTCGGGGTTTCGCTAC 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 318 AATTCACTTTAGCCAAGATTTCATTTGGTGTTATTGGGCTAGGTCTCGGGGTTTCGCTAC 377
Query 360 TCTCGTATGGTTTTGGGGCTTATTTTAATATCCTTCCTGGATCTGAGTGGTCTGCTATAA 419
||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||||||
Sbjct 378 TCTCGTATGGTTTTGGGGCCTATTTTACTATCCTTCCTGGAACTGAGTGGTCTGCTATAA 437
Query 420 TGCTAACATATGGATTTCCCCTTGCTATTATCGGAATGGCTCTTAAGTACGCAGAACTCA 479
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 438 TGCTAACATATGGATTTCCCCTTTCTATTATCGGAATGGCTCTTAAGTACGCAGAACTCA 497
Query 480 AACCAGTTCCTTGCTTGAGCTACTCAGATGCTGTAAAGCTTAGAGAAAGCTGTGCCACTC 539
|||||||||||||||||||||| || ||||| || |||||||||||||||||||| ||||
Sbjct 498 AACCAGTTCCTTGCTTGAGCTATTCGGATGCGGTGAAGCTTAGAGAAAGCTGTGCTACTC 557
Query 540 CTATTTTAACGCAGGTTAGAAATGATGTCACGAGATACCGTTATGGAGATGAACAACATT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 558 CTATTTTAACGCAGGTTAGAAATGATGTCACGAGATACCGTTATGGAGATGAACAACATT 617
Query 600 TGGAAGAAGCGCTAAAACGAATCTTTCAATATGGACTGGGAGGAGGAATCCCAAGACGTA 659
|||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 618 TGGAAGAAGCACTAAAACGAATCTTTCAATATGGGCTGGGAGGAGGAATCCCGAGACGTA 677
Query 660 GTGCACCTATCTTACAGCTGATAAGGGAGGAGGTCCTGACCGATGGTCGTTACTGTCTGG 719
|||||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||
Sbjct 678 GTGCACCTATCTTACAGCTGATAAGGGAAGAGGTCCTGACCGATGGTCGGTACTGTGTGG 737
Query 720 TCCTTGTATTTGAGGCCAAAGCTCTGACGTTGTCAGATTTTGAGAAAAGACAGGCGAAAT 779
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 738 TCCTTGTATTTGAGGCCAAAGCTCTGACGTTGTCAGATTTTGAAAAAAGACAGGCGAAAT 797
Query 780 TCACTTCTTTCTTTGGACCAAACATCACTGCAGAAGTTGGTAAAGGAGAAAGAGAGAATC 839
||||||| |||||||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 798 TCACTTCCTTCTTTGGACCAAACATCACGGCAGAAGTCGGTAAAGGAGAAAGTGAGAATC 857
Query 840 TCTATGAAGTAAGACTGATTTCCAACCTCTCCACCAACTCTGTATCTTCTACCGCTTGA- 898
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 858 TCTATGAAGTAAGACTGATTTCCAACCTCTCCACCAACTCTGTATCTTCTACCTCTTGAA 917
Query 899 CA-A-----TCATGTATACGGCAACGTTTTCAGACAA 929
|| | ||||||||||||| |||||||||| |||
Sbjct 918 CATAGACAATCATGTATACGGCGACGTTTTCAGTCAA 954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45411668888
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5