BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494108
Length=1859
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38600.1 | Symbols: | Proline-rich spliceosome-associated (... 2233 0.0
AT1G67210.1 | Symbols: | Proline-rich spliceosome-associated (... 656 0.0
> AT5G38600.1 | Symbols: | Proline-rich spliceosome-associated
(PSP) family protein / zinc knuckle (CCHC-type) family protein
| chr5:15456595-15460767 FORWARD LENGTH=2039
Length=2039
Score = 2233 bits (1209), Expect = 0.0
Identities = 1540/1688 (91%), Gaps = 70/1688 (4%)
Strand=Plus/Plus
Query 150 CCTTGAATCTGGGAATGGGTCTCCTGAGGCTAATTCTTTAGTTGGTAATGATGAGAACAT 209
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 208 CCTTGAATCTGGGAATGGGTCACCTGAGGCTAATTCTTTAGTTGGTAATGATGAGAATGT 267
Query 210 GAAAGGAAATTTAGATGTGGAGAAGGATTTGGATTTAACGGAAGAGAATTTGACAACTGT 269
||||||||| | | | | |||||||||||||| ||||||||||||| || |||
Sbjct 268 GAAAGGAAA--T---T-T-----A-GATTTGGATTTAACAGAAGAGAATTTGAGAATTGT 315
Query 270 CTGTGGCCAGGAGTCTGGGGAAATATTAACAGAGCAGGTTAGTGATGTGTTCAATGC--- 326
| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 316 CGGTGGCCAAGAGTCTGGGGAAATACTAACAGAGCAGGTTAGTGATGTGTTCAATGCGAG 375
Query 327 ----G--AGTGTGGCGGTAGATGAGAAAGTGGGTATCCAAAAGGAGACACTAGTTCACAG 380
| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 376 TGTGGAAAGTGTGGCGGTAGATGAGAAATTGGGTATCCAAAAGGAGACACTAGTTCACAG 435
Query 381 CACCACTTTGGATGTTAGTTCTAAAGCGGGTGTGAAAAGACCCCGAACATCGTTTGACGA 440
||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 436 CACCACTTTGGATGTTAGTTCTAAAGCGGGTGTTAAAAGACCCCGAACATCGTATGACGA 495
Query 441 ACAGCAATCTACAGTACATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCT 500
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 ACAGCAGCCTACAGTCCATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCT 555
Query 501 GGAAAGTTTATTACGGCAATGGTCAGAATGGGAGGCTGAAAACACGTCCTTGGTTCAGGA 560
|||||||||||||| | ||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 556 GGAAAGTTTATTACAGAAATGGTCAGAATGGGAGGCTGAAAATACGTCCTTGGCTCAGGA 615
Query 561 TCAAGTACAACCATTAGAATCTGGTGAAGAGACATATTTCCCTGCCTTACGTGTTGGATT 620
||||| ||||| ||| ||||||||||||||||||| |||||| ||| |||||||||||||
Sbjct 616 TCAAGAACAACTATTCGAATCTGGTGAAGAGACATGTTTCCCCGCCATACGTGTTGGATT 675
Query 621 GCAGAAGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTCCTAAGCCGCTGGA 680
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 676 GCAGAAGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTCATAAGCCGTTGGA 735
Query 681 AGAGTTTGTCCTAGTGGAAAGTAGCACCACTCCTCTCTATGACCGTAAATTTGCAATTGG 740
||| ||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||
Sbjct 736 AGATTTTGTTCTAGTGGAAAGTAGCACCACTCCTCTTTATGACCGTAAATTTGCTATAGG 795
Query 741 TTTAAATTCAGCAGATGGCTCAAGAAACTTGGAAGGGGGATTGGAGGTTATTGATGATGA 800
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 796 TTTAAATTCAGCAGATGGCTCAAGAAACGTGGAAGGGGGATTGGAGATTATTGATGATGA 855
Query 801 TCCTCCACGTTGCTTCAATTGTGGTGGCTATAGTCATTCCT-TAAGAGAATGTCCAAAGC 859
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||| ||
Sbjct 856 TCCTCCACGTTGCTTCAATTGTGGTGGCTATAGTCATT-CTCTAAGAGAATGTCCAAGGC 914
Query 860 CTTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAATCTAAACGAAATCAGA 919
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 CTTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAATCTAAACGAAATCAGA 974
Query 920 GTAGTAGTGGGCCCCGTCTACCATCGAGATATTATCAAAAACCTCAAAGTGGAAAGTATG 979
|||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||
Sbjct 975 ATAGTAGTGGGCCCCGTCTACCATCAAGATATTATCAAAAAACTCAAACTGGAAAGTATG 1034
Query 980 ATGGCTTGAAACCCGGCACACTTGATGCAGAGACACGTCAGCTTCTGAATCTTGGGGAAC 1039
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1035 ATGGCTTGAAACCCGGCACACTTGATGCAGAGACTCGTCAGCTTCTGAATCTGGGGGAAC 1094
Query 1040 TAGATCCTCCTCCATGGCTCAACAGAATGCGAGAGATTGGGTATCCTCCAGGATACTTAG 1099
|||| |||||||| ||||| |||||||||||||| |||||||| || |||||||||||||
Sbjct 1095 TAGACCCTCCTCCGTGGCTAAACAGAATGCGAGAAATTGGGTACCCACCAGGATACTTAG 1154
Query 1100 CTCCAGAAGATGACCATTTGTCTGGTATAACTATATTTGGAGAAGAGGTGGAGACTCGGG 1159
||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 1155 CTCCAGAAGATGATCATTTGTCTGGAATAACTATATTCGGAGAAGAGGTGGAGACTCGGG 1214
Query 1160 AGGA-ATTAGAGAGTGAGGATGGGGAAATCTTGGAAAAAGCAAACCA---TCCAGAGCCA 1215
|||| | |||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 1215 AGGAGA-TAGAGAGTGAGGATGGGGAAATTTTGGAAAAAGCAAACCATCCTCCAGAGCCA 1273
Query 1216 CAAATGAAAAAGACAGTCGAGTTTCCGGGAATTAATGCTCCCTTCCCAGAAAACGCAGAT 1275
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1274 CAAATGAAAAAGACCGTCGAGTTTCCGGGAATTAACGCTCCCTTCCCAGAAAACGCAGAT 1333
Query 1276 GAGTGGCTTTGGGAAGCTGCACCTTCACATAGGAACAGCAGCAGAAGCGGCCGATGGCAA 1335
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1334 GAGTGGCTTTGGGAAGCTGCACCTTCACATAGGAACAGCAGCAGAAGCGGCCGATGGCAA 1393
Query 1336 CAACAAAGAACAAGCAGAGGACATGATTACAGAGATGATGGTCAGCTTGGTGTTGAATCA 1395
||||||| ||||||||||||||||||||||||||| ||||||| ||| || |||||| ||
Sbjct 1394 CAACAAAAAACAAGCAGAGGACATGATTACAGAGACGATGGTCCGCTCGGCGTTGAACCA 1453
Query 1396 TCTAGTTATCCTCCAAGGTATGGCAGTAGATATGATTACGGGTATGGTTCAAACGATTAT 1455
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1454 TCAAGTTATCCTCCAAGGTATGGCAGTAGATATGATTACGGGTATGGTTCAAACGAATAT 1513
Query 1456 AGTTCTAGATCAAGAAGTCCGGGCATAGATAGATCTTTATCCGAAAGAAGTAAGAGGGAT 1515
||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1514 GGTTCTAGGTCAAGAAGTCCAGGCATAGATAGATCTTTATCCGAAAGAAGTAAGAGGGAT 1573
Query 1516 TATTCTTCTTACGATGCTGATTTCCGGgagagagatagagat--ag--a-g-ac------ 1563
|||||||||||||||||||| ||||||||||||||||||||| || | | ||
Sbjct 1574 TATTCTTCTTACGATGCTGACTTCCGGGAGAGAGATAGAGATAGAGACAGGAACAGGGAT 1633
Query 1564 a--g---ga-ac--aga----gatagggacagagacagagact--g---g-gatagggac 1605
| | || || ||| ||||||||||| |||||||||| | | || ||||||
Sbjct 1634 AGGGATAGAGACAGAGACTGGGATAGGGACAGGGACAGAGACTGCGATAGAGACAGGGAC 1693
Query 1606 agggacGATCGTGATTGGTCTTATAGATTAAACAGCAGGAGATAAATTGTGAGA-TTGTT 1664
||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||
Sbjct 1694 AGGGACGATCGTGATTGGTCTTATAGATTAAGCAGCAGGAGATAAATTGTGAGACTT-TT 1752
Query 1665 AGCTGTGTATGTGTGTATGTGGAGGTTAGGGTTTCATTTTCTACTCTCTCTTTCCCTCTC 1724
||||||||||||||||||||||||||||||||| || ||| | | | ||| | ||||
Sbjct 1753 AGCTGTGTATGTGTGTATGTGGAGGTTAGGGTT-CAATTT-T--T-T-TCTA-CATTCTC 1805
Query 1725 TCTATGTTGGTTT-TGTTGTTGTATCATGTCCATGAAAGTGGAAGCTTTTTTCTAGTTAT 1783
||| | | | | || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1806 TCT-T-TCCCTCTATGCTGTTGTATCATGTCCATGAAAGTGGAAGCTTTCTTCTAGTTAT 1863
Query 1784 CAGACTTT 1791
||||||||
Sbjct 1864 CAGACTTT 1871
Score = 185 bits (100), Expect = 1e-45
Identities = 143/161 (89%), Gaps = 13/161 (8%)
Strand=Plus/Plus
Query 1 TCTTCCTTTTGAATCTCACAG----A--T-CTATCGCCATTTTTGCTTCTTCACTCCTCC 53
||||||||||||||||||||| | | ||||||||||| |||||||||| |||||||
Sbjct 5 TCTTCCTTTTGAATCTCACAGATCTATCTACTATCGCCATTCTTGCTTCTTCCCTCCTCC 64
Query 54 ATTGACT-AGGG-GTATTTTTATGGGTGGTTTGTGAAATTGTTTTGAGGATATAATC-TT 110
||||||| |||| || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 65 ATTGACTAAGGGTGT-TTTTTATGGGTGGTTTGTGAAATTGTTTTGAGGATATAAAGATT 123
Query 111 TCAATTTTGTTTTGAAA-TGGAAGCTGAGGATGTGCTTGAC 150
|||||||||||| |||| ||||| |||||||||||||||||
Sbjct 124 TCAATTTTGTTT-GAAAATGGAAACTGAGGATGTGCTTGAC 163
Score = 122 bits (66), Expect = 9e-27
Identities = 68/69 (99%), Gaps = 0/69 (0%)
Strand=Plus/Plus
Query 1791 TTTAAGGTTTTACTATTTTGGGTATGTCTTCACCTCTTAAAATGGAAAGTTAGTTACTCA 1850
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1916 TTTAAGGTTTTACTATTTTGGGTATGTCTTCACTTCTTAAAATGGAAAGTTAGTTACTCA 1975
Query 1851 TGTTTCTTA 1859
|||||||||
Sbjct 1976 TGTTTCTTA 1984
> AT1G67210.1 | Symbols: | Proline-rich spliceosome-associated
(PSP) family protein / zinc knuckle (CCHC-type) family protein
| chr1:25140815-25144043 FORWARD LENGTH=1673
Length=1673
Score = 656 bits (355), Expect = 0.0
Identities = 748/929 (81%), Gaps = 61/929 (7%)
Strand=Plus/Plus
Query 391 GATGTTAGTTCTAAAGCGGGTGTGAAAAGACCCCGAAC-ATCGT-T-TGACGAACAGCAA 447
||||||||||||||| | ||||| |||||| || |||| ||| | | || |||||||||
Sbjct 367 GATGTTAGTTCTAAATCTGGTGTTAAAAGAGCCAGAACAATC-TCTCTG--GAACAGCAA 423
Query 448 TCTACAGTACATGTTACTTATAAGCACTTAACGAGAGCTAGTAAGCAGAAGCTGGAAAGT 507
|| |||| |||||||||||||| |||||||| |||| ||||||||||||||||||||||
Sbjct 424 CCTTCAGTCCATGTTACTTATAAACACTTAACAAGAGATAGTAAGCAGAAGCTGGAAAGT 483
Query 508 TTATTACGGCAATGGTCAGAATGGGAGGCTGAA-AACACGTCCTTGGTTC-AGGATCAAG 565
||||||| ||||||||||||||||||||| ||| || | |||||| | | |||||||||
Sbjct 484 TTATTACAGCAATGGTCAGAATGGGAGGCAGAACAAAAT-TCCTTG-TCCGAGGATCAAG 541
Query 566 TACAACCATTAGAATCTGGTGAAGAGACATA-TTTCCCTGCCTTACGTGTTGGATTGCAG 624
|||| | ||||| ||||||| |||||||| ||||| ||| || ||||| |||||||||
Sbjct 542 AACAAGTACTAGAAGCTGGTGATGAGACATACTTTCC-TGCTTTGCGTGTGGGATTGCAG 600
Query 625 AAGACTTCGTCTGTGTCATTCTGGATCGACAACCAAACTGGTC-CTAAGCCGCTG-GAAG 682
||||| || ||||| ||||| ||| | ||| |||||||||||| | | | || ||||
Sbjct 601 AAGACATCATCTGTATCATTTTGGTTTGACTACCAAACTGGTCAC-A-GTT-CTTCGAAG 657
Query 683 A-GTTTGT-CCTAGTGGAAAGTAGCACCACTCCTCTCTATGACCGTAAATTTGCAATTGG 740
| || ||| || ||||||||||||||| |||||||| ||| ||||| |||| |||||||
Sbjct 658 AAGTCTGTTCC-AGTGGAAAGTAGCACTACTCCTCTTTATAACCGTGGATTTACAATTGG 716
Query 741 TTTAAATTCAGCAGATGGCTCAAGA-AACTTGGAAGGGGGATTGGAGGTTATTGATGATG 799
|||| |||||| | | |||| | ||| ||||||| || |||||| |||||||||||
Sbjct 717 TTTAGATTCAG--G-T---TCAA-ATAACGTGGAAGGAGGCTTGGAGATTATTGATGAT- 768
Query 800 ATCCTCCACGTTGCTTCAATTGTGGTGGC-TATAGTCATTCC-TTAAGAGAATGTCCAAA 857
||||||||||||||||| ||||| | | || |||||||| ||| ||||||||||||
Sbjct 769 --CCTCCACGTTGCTTCAACTGTGGCG-CATACAGTCATTCTATTA-GAGAATGTCCAAG 824
Query 858 GCCTTTTGATCGATCAGCGGTTAATAGTGCTCGGAAGCTTCAGAAATCTAAACGAAATCA 917
|||||||||||||||||| |||| || |||||||| || || ||| ||| |||||||
Sbjct 825 GCCTTTTGATCGATCAGCAGTTAGTAATGCTCGGAGGCAACATAAAAGAAAAAGAAATCA 884
Query 918 GAGTAGTAGTGGGCCCCGTCTACCATCGAGATATTATCAAAAACCT-CAAAGTGGAAAGT 976
|| | | | | ||| |||||||||| ||||||||||| | ||| ||| ||||||| |
Sbjct 885 GACTCCT-G-GATCCC-GTCTACCATCCAGATATTATCAGAG-CCTTCAACGTGGAAAAT 940
Query 977 ATGATGGCTTGAAACCCGGCACACTTGATGCAGAGACACGTCAGCTTCT-GAATCTTGGG 1035
||||||||||||| || ||| |||||||||||||||| ||| ||||||| | ||| |
Sbjct 941 ATGATGGCTTGAAGCCTGGCTCACTTGATGCAGAGACGCGTAAGCTTCTCGG-TCTAAAG 999
Query 1036 GAACTAGATCCTCCTCCATGGCTCAACAGAATGCGAGAGATTGGGTATCCTCCAGGATAC 1095
||||| ||||||||||||||||| |||||||||||||||||||| ||||| ||||||||
Sbjct 1000 GAACTCGATCCTCCTCCATGGCTTAACAGAATGCGAGAGATTGGATATCCACCAGGATAT 1059
Query 1096 TTAGCTCCAGAAGATGACCATT-TG-TC--T-G-GTATAACTATATTTGG--AG-AAGAG 1146
|| ||| |||||| ||| || || || | | | |||||||||||||| || |||||
Sbjct 1060 TTTGCTGTAGAAGAAGACGATGATGATCACTCGAGAATAACTATATTTGGTGAGGAAGAG 1119
Query 1147 G-TGGAGACTCGGGAGGAA-TTAGAGAGTGAGGATGGGGAAATCTTGGAAAAAGCAAACC 1204
| ||| || || || ||| ||| ||| || || ||||||||||||||||| | ||
Sbjct 1120 ACTAAAGAAGAGGAAG-AAGTTA-AGACTGAAGAAGGTGAAATCTTGGAAAAAGCTAGCC 1177
Query 1205 ATCCAGAGCCAC-AAATGAAAAAGACAGTCG-AGTTTCCGGGAATTAATGCTCCC-TTCC 1261
|| ||||||| ||| || || |||||| | | ||||| || ||||| || ||| ||||
Sbjct 1178 CTCAAGAGCCAAGAAA-GATAATGACAGTTGGA-TTTCCCGGTATTAACGCACCCATTCC 1235
Query 1262 CAGAAAACGCAGATGAGTGGCTTTGGGAA 1290
||||||||||||| |||||| ||||||
Sbjct 1236 -AGAAAACGCAGATTCGTGGCTATGGGAA 1263
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92017598985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5