BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494121
Length=2789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38560.1 | Symbols: | Protein kinase superfamily protein | ... 4205 0.0
> AT5G38560.1 | Symbols: | Protein kinase superfamily protein
| chr5:15439249-15443164 FORWARD LENGTH=2798
Length=2798
Score = 4205 bits (2277), Expect = 0.0
Identities = 2649/2821 (94%), Gaps = 56/2821 (2%)
Strand=Plus/Plus
Query 1 aaaaagaaactcaagtcaatgaagaaaaagactaaaaaatggctatgataaag-aaa-CA 58
|||| |||||||||||||||||| |||||||| ||| ||| |||||||| ||| ||| |
Sbjct 1 AAAACGAAACTCAAGTCAATGAATAAAAAGACGAAACAAT-GCTATGAT-AAGAAAAGAA 58
Query 59 ACAACACTCGaaaaaaaaGCTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC 118
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 59 ACAACACTCG---AAAAAGTTCTTCTTTTTCTTCCGCACATGTCTGACTCTCTCATAAGC 115
Query 119 GTAAATCTCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTGTCCA 178
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 116 GTAAATCGCTCTGTCAAATATCTCTGACCAGAGAGACAGAGTTGCCTCCACGTTTCTTCA 175
Query 179 GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTCTTCCATTTCTCAATCTCACTT 238
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 176 GACAAGACTCACGCTCTTCCCTTTCACCACATTCCCTTC-TCCATTTCTCAATCTCACTT 234
Query 239 AAGCTTCTCGATTCTTCTTCCTCCAATTTCGAATCTTCCAAGTGAAAAAAGCTCCAAAGT 298
| |||||||| ||||| ||||||||||||||||||| ||||||||||||| ||||||
Sbjct 235 -ACCTTCTCGA---TTCTTGCTCCAATTTCGAATCTTCCGAGTGAAAAAAGCTTCAAAGT 290
Query 299 TTGGAACTTTCTACAGTTTCTTCATCTGGGCCTGCTCTGAATTTCGTTTGTAGCTTAATC 358
||||||||||||| |||| || ||||||| ||||||||| |||||| ||||||| ||
Sbjct 291 TTGGAACTTTCTAGTGTTTATTAATCTGGGTCTGCTCTGAGTTTCGTGTGTAGCTGCATA 350
Query 359 TGAGCTTAAAGTTCGAGTTTTTACTTCTGGGTATTGAAATTCTAGGGCTAGTGATTGAAG 418
||||||||||| |||||||||| | ||||||| ||| |||||||||||||||||||| ||
Sbjct 351 TGAGCTTAAAGCTCGAGTTTTTCCATCTGGGT-TTGGAATTCTAGGGCTAGTGATTGGAG 409
Query 419 ATTTTGGGAACTTAGGTTGA-TTTAGTAGGTTTGACTTCAGGTTGCGGAATTTAGGTTGA 477
|||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 410 ATTTTGGGAATTTAGGTTGATTTTAGTAGGTTTGACTTCAGGTTGCGTAATTTAGGTTGA 469
Query 478 TTTTGATCTGATTTGTGGAATTAGGGTTTGTTTGTTCATAAAGCTTCAATTTTTGGCGTT 537
|||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 470 TTTTGATCCGATTTGTGGAATTAGGGTTTGTTTGTTCACAAAGCTTCAATTTTTGGAGTT 529
Query 538 TAAATGGATCGATAACGAAGGTGTTAGAAGAAAGTTTGTTGCTTTAGATTCGTATACGAT 597
|||||||||||||||||| |||||||||||||||||| ||||| |||||||||| ||||
Sbjct 530 TAAATGGATCGATAACGACTGTGTTAGAAGAAAGTTTGCTGCTTCAGATTCGTATTCGAT 589
Query 598 AAAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCGCCACCGTCGTCAAATTCTTCA 657
| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 590 ATAGAAATGAGTTTGGTTCCTCCTTTACCGATTTTATCACCACCGTCGTCAAATTCTTCA 649
Query 658 ACTACCGCACCTCCTCCGTTACCGTCTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT 717
|| || |||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 650 ACAACTGCACCTCCTCCGTTACAGACTCAGCCCACCACTCCATCTGCTCCACCTCCGGTT 709
Query 718 ACACCACCTCCTTCTCCGCCGCAATCTCCTCCGCCGGTTGTATCATCATcaccaccacca 777
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 710 ACACCACCTCCTTCTCCGCCGCAATCTCCGCCGCCGGTTGTATCATCAT---CACCACCA 766
Query 778 ccaccggttgtttcgtcacctccaccgtcttcttctccaccaccgtcaccTCCCGTCGTT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 767 CCACCGGTTGTTTCGTCACCTCCACCGTCTTCTTCTCCACCACCGTCACCTCCTGTCATC 826
Query 838 ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCTCCT 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 827 ACTTCACCTCCTCCCACCGTTGCTTCTTCCCCTCCACCTCCTGTGGTGATTGCTTCCCCT 886
Query 898 CCTCCCTCTACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCA 957
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CCTCCCTCAACTCCGGCGACAACACCACCAGCTCCTCCGCAAACTGTCTCACCTCCACCG 946
Query 958 CCTCCTGATGCTTCTCCCTCACCTCCTGCACCAACAACAACAAACCCTCCTCCTAAACCT 1017
||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||||
Sbjct 947 CCTCCTGATGCTTCTCCATCACCTCCCGCACCAACAACAACAAATCCTCCTCCTAAACCT 1006
Query 1018 TCTCCTT---CGCC----G--------------CCGGGAGAAACACCTTCACCGCCTAAA 1056
||||||| |||| | |||||||||||||||||||||||||||
Sbjct 1007 TCTCCTTCACCGCCGGGAGAAACACCTTCACCACCGGGAGAAACACCTTCACCGCCTAAA 1066
Query 1057 CCTTct-c--c-a-t-caactccaacaacaaccacatctcctcctcctcctccagctatc 1110
|||||| | | | | |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1067 CCTTCTCCGTCAACTCCAACTCCAACAACAACCACATCTCCTCCTCCTCCTCCAGCTACC 1126
Query 1111 tctgcttctcctccGTCTTCAAATCCAACTGATCCTTCTACTTTAGCTCCTCCTCCAACT 1170
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 1127 TCTGCTTCTCCTCCGTCTTCAAATCCTACTGATCCTTCTACGTTAGCTCCTCCTCCAACT 1186
Query 1171 CCATTACCTGTTCTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCATCTTCAAAC 1230
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1187 CCATTACCTGTTGTTCCCAGAGAGAAACCAATTGCTAAACCAACTGGACCAGCTTCAAAC 1246
Query 1231 AATGGAAACAACACTATGCAGTCTGA-TTCATCAGGTAAGAGCGGAGTTGGTACTGGAGG 1289
||||||||||||||| ||| |||| | |||| ||||||| |||| |||||||||||||||
Sbjct 1247 AATGGAAACAACACTTTGCCGTCT-AGTTCACCAGGTAAAAGCGAAGTTGGTACTGGAGG 1305
Query 1290 TATTGTAGCTATTGGAGCGATAGTCGGATTGGTTTTTCTTAGCCTTTTTGTGTTGGGTGT 1349
|||||||||||| |||| ||| || ||||||||||||||||||||||||||| |||||||
Sbjct 1306 TATTGTAGCTATCGGAGTGATTGTGGGATTGGTTTTTCTTAGCCTTTTTGTGATGGGTGT 1365
Query 1350 GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACTATGCC 1409
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1366 GTGGTTCACTCGGAAACGAAAGCGAAAGGACCCTGGAACCTTTGTTGGATACACAATGCC 1425
Query 1410 TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCATTCTTC 1469
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1426 TCCTTCCGCTTATTCATCTCCTCAAGGCTCAGATGTAGTGCTCTTCAACTCGCGTTCTTC 1485
Query 1470 AGCTCCTCCTAAGATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC 1529
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 AGCTCCTCCTAAAATGAGAAGCCATTCTGGTAGCGATTACATGTATGCGTCATCTGATTC 1545
Query 1530 AGGCATGGTTAGCAACCAAAGATCTTGGTTTTCATATGATGAATTATCTCAAGTTACAAG 1589
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||
Sbjct 1546 AGGCATGGTTAGCAACCAAAGATCATGGTTTTCATATGATGAGTTATCTCAAGTTACCAG 1605
Query 1590 TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT 1649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1606 TGGGTTCTCCGAGAAGAATCTTCTCGGTGAAGGAGGGTTTGGCTGTGTATACAAAGGCGT 1665
Query 1650 TCTTGCAGACGGAAGGGAAGTGGCAGTTAAACAGTTGAAGATTGGTGGAAGTCAAGGAGA 1709
|||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1666 TCTTTCTGACGGAAGGGAAGTGGCAGTTAAACAGTTAAAGATTGGTGGAAGCCAAGGGGA 1725
Query 1710 GAGAGAGTTCAAAGCAGAAGTTGAAATTATTTCTCGGGTTCATCACCGTCATTTGGTTAC 1769
||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1726 GAGAGAGTTCAAAGCAGAAGTTGAAATCATTTCTCGGGTTCATCACCGCCATTTGGTTAC 1785
Query 1770 ATTAGTCGGTTATTGCATCTCGGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA 1829
| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1786 ACTAGTTGGTTATTGCATCTCAGAGCAACATAGGTTGCTTGTATATGATTATGTACCTAA 1845
Query 1830 CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCGGTTATGACTTGGGAAACTCG 1889
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1846 CAACACTCTCCATTATCATCTCCATGCTCCAGGAAGACCAGTTATGACTTGGGAAACTCG 1905
Query 1890 GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC 1949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 GGTAAGGGTCGCTGCTGGTGCAGCTCGTGGAATCGCCTACTTACATGAAGACTGTCATCC 1965
Query 1950 CCGCATTATTCACCGTGACATTAAATCATCCAACATACTT-TTAGATAACAGCTTTGAAG 2008
||||||||||||||||||||| ||||| |||||||||||| || ||||||||||||||||
Sbjct 1966 CCGCATTATTCACCGTGACATAAAATCTTCCAACATACTTCTT-GATAACAGCTTTGAAG 2024
Query 2009 CCTTGGTTGCAGATTTTGGGCTTGCGAAAATAGCACAAGAACTGGATTTAAACACACACG 2068
|||||||||| |||||||| ||||| ||||| ||||||||||||||||||||||||||||
Sbjct 2025 CCTTGGTTGCGGATTTTGGACTTGCAAAAATTGCACAAGAACTGGATTTAAACACACACG 2084
Query 2069 TCTCAACACGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA 2128
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2085 TCTCAACGCGCGTAATGGGAACCTTTGGGTACATGGCTCCTGAATATGCAACAAGTGGAA 2144
Query 2129 AGCTGTCTGAAAAAGCGGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG 2188
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2145 AGCTGTCTGAAAAAGCAGATGTTTATTCGTATGGGGTAATACTGTTGGAGCTTATAACTG 2204
Query 2189 GCCGCAAACCTGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA 2248
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2205 GCCGTAAACCCGTAGATACGTCTCAACCACTTGGTGATGAGAGCCTTGTTGAATGGGCAA 2264
Query 2249 GACCCTTGCTGAGTCAAGCAATCGAAAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC 2308
||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2265 GACCCTTGCTGGGTCAAGCAATCGAGAACGAAGAATTCGACGAGCTAGTAGATCCGAGGC 2324
Query 2309 TAGGGAACAACTTCATCCCGGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG 2368
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2325 TAGGGAAAAACTTCATCCCAGGAGAGATGTTCAGAATGGTAGAAGCTGCGGCTGCATGTG 2384
Query 2369 TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGCCAAGTGGTGAGAGCTTTGGACACAC 2428
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2385 TCCGCCACTCAGCTGCAAAAAGACCAAAGATGAGTCAAGTGGTGAGAGCTTTGGACACAC 2444
Query 2429 TGGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT 2488
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2445 TTGAAGAAGCAACGGACATAACCAACGGAATGAGACCAGGACAGAGCCAAGTGTTTGACT 2504
Query 2489 CGAGACAACAATCTGCTCAGATAAGAATGTTTCAGAGAATGGCTTTTGGAAGTCAAGATT 2548
||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||
Sbjct 2505 CGAGACAACAATCTGCTCAGATAAGGATGTTTCAAAGAATGGCTTTTGGGAGTCAAGATT 2564
Query 2549 ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGAAGTCGTGACCAGT 2608
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2565 ATAGTTCTGACTTCTTTGATCGCTCACAGTCACATAGTAGCTGGGGCAGTCGTGACCAGT 2624
Query 2609 CCAGATTTGTACCTTAGTAGGTTTTATTGTTTTTGCTACTTTCTTCTTTCCCCTTAAACA 2668
|||||||||||||||||||| |||||||| |||||| |||||||||||||| |||||||
Sbjct 2625 CCAGATTTGTACCTTAGTAGTTTTTATTGCCTTTGCTTCTTTCTTCTTTCCCTTTAAACA 2684
Query 2669 TGTCTTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTTAAAATATACATACA 2728
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 2685 TGTCCTCGATCTTGTATATTCTTTTGCATGATATAATGTATTTTTGAAA-TATACATACA 2743
Query 2729 TACACATAAATTTGATAAAATTTGGTAGTCTTTTGAAGAAAAAGAATTACAGATATATTT 2788
|||||| | | | ||| ||||||||||||||||||||||||||| |||||| |||||
Sbjct 2744 TACACACA--T---A-AAA-TTTGGTAGTCTTTTGAAGAAAAAGAATAACAGATGTATTT 2796
Query 2789 G 2789
|
Sbjct 2797 G 2797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138561096566
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5