BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494122
Length=1686
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38530.1 | Symbols: TSBtype2 | tryptophan synthase beta type... 2610 0.0
> AT5G38530.1 | Symbols: TSBtype2 | tryptophan synthase beta type
2 | chr5:15424038-15426470 FORWARD LENGTH=1756
Length=1756
Score = 2610 bits (1413), Expect = 0.0
Identities = 1570/1646 (95%), Gaps = 9/1646 (1%)
Strand=Plus/Plus
Query 23 GATAACAAAGAAATGGCCTCTCAATTGCTTTTGCCTCCAAACCAATTCACCAAATCAGTC 82
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 48 GATAACAAAGAAATGGCCTCTCAATTGCTTTTACCTCCAAACCAATTCACTAAATCAGTC 107
Query 83 TCAGCTAAAGTTTTC-TTCACTGGTGATTATCAAGGATTTAGTGACTTAACCCTGAGAAG 141
||| || |||||||| || |||||||||| ||||||||||||||||||||| |||| |||
Sbjct 108 TCACCTCAAGTTTTCATT-ACTGGTGATTGTCAAGGATTTAGTGACTTAACTCTGAAAAG 166
Query 142 AAAATCTAATCAAGC-ACAAAGGGTTTCAAATAATGGATTTAGCTTAAGAGCAAAAGCAG 200
|||||| || ||||| || ||| ||||| | ||||||| ||||||||||| ||||||||
Sbjct 167 AAAATCAAACCAAGCTAC-AAGAGTTTC--A-AATGGATCTAGCTTAAGAGTAAAAGCAG 222
Query 201 ATTTGAGATCTACTAACAACAAATCATTGGTTGAAATTCCAAAACAATGGTACAATCTTG 260
||||||||||||| ||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 223 CTTTGAGATCTACTCACAACAAATCAGTGGTTGAGATTCCAAAACAATGGTATAATCTTG 282
Query 261 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCCAACCGATAA 320
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 283 TTGCTGATCTTTCAGTCAAGCCTCCTCCACCGTTGCATCCAAAGACTTTCGAACCGATAA 342
Query 321 AACCTGAAGATTTGTCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCAACACAAG 380
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 343 AACCCGAAGATTTGGCTCATCTTTTCCCCAATGAGTTGATTAAACAAGAAGCTACACAAG 402
Query 381 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 AGAGGTTTATTGATATCCCTGAGGAAGTTCTTGAAATCTATAAGCTTTGGCGTCCAACTC 462
Query 441 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAGACACCGGCAAGGATTTACTTCA 500
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 463 CTCTAATCAGAGCAAAGAGATTAGAGAAGCTTCTTCAAACACCGGCAAGGATTTACTTCA 522
Query 501 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCCAACACAGCGGTTCCGCAAGCTT 560
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 523 AGTATGAAGGTGGTAGCCCAGCTGGTTCACACAAACCAAACACAGCGGTTCCACAAGCTT 582
Query 561 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGCCAATGGG 620
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 583 ATTACAATGCGAAAGAAGGCGTCAAGAACGTTGTGACGGAAACCGGTGCTGGTCAATGGG 642
Query 621 GCAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGCCTTGACTGCGAAGTATGGCAAGTAG 680
| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 643 GAAGTTCTTTAGCCTTTGCTTCTAGTCTATTTGGTCTCGACTGCGAAGTATGGCAAGTAG 702
Query 681 CCAACTCGTACCATACAAAGCCATATCGTCGGTTAATGATGCAAACTTGGGGTGCAAAGG 740
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 703 CCAACTCTTACCATACAAAGCCATATCGCCGGTTAATGATGCAAACTTGGGGTGCAAAGG 762
Query 741 TTCATCCATCGCCATCGGATCTCACTGAGGCAGGTAGAAGAATCCTCGAATCCGATCCAT 800
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 763 TTCATCCGTCGCCATCGGATCTCACTGAGGCGGGTAGAAGAATCCTCGAATCCGATCCAT 822
Query 801 CAAGTCCGGGAAGTTTAGGCATTGCGATTTCAGAAGCTGTTGAAGTTGCAGCGAGAAACG 860
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 823 CAAGTCCGGGAAGTTTAGGCATTGCGATATCAGAAGCGGTTGAAGTTGCAGCGAGAAACG 882
Query 861 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAGACAATTA 920
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 883 AGGATACAAAATACTGCCTAGGGAGTGTATTGAACCATGTGTTGTTACACCAAACAATTA 942
Query 921 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGATTTGATCATAG 980
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 943 TTGGAGAAGAATGCATTCAACAAATGGAGAATTTTGGTGAAACACCTGACCTGATCATAG 1002
Query 981 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATTCGAGAGAAAC 1040
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1003 GGTGTACTGGTGGAGGATCAAATTTTGCTGGTTTGAGTTTTCCTTTTATCCGGGAGAAAC 1062
Query 1041 TCAAAGG-AAATATAAACCCTGTTATAAGAGCGGTTGAGCCCTCGGCTTGTCCTTCCTTG 1099
||||||| ||| || |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1063 TCAAAGGCAAA-ATCAACCCTGTTATAAGAGCGGTTGAGCCATCTGCTTGTCCTTCCTTG 1121
Query 1100 ACCAAAGGGGTTTACGCGTATGATTTTGGCGATACAGCTGGATTGACTCCTTTGATGAAG 1159
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1122 ACCAAAGGGGTTTATGCTTATGATTTTGGCGATACGGCTGGATTGACTCCTTTGATGAAG 1181
Query 1160 ATGCATACTTTAGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTACGGTAC 1219
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1182 ATGCATACTTTGGGACATGACTTCATTCCTGATCCTATCCATGCCGGTGGATTAAGGTAC 1241
Query 1220 CATGGGATGGCACCCTTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1279
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 CATGGGATGGCACCATTGATCTCACATGTTTATGAACAAGGATTCATGGAAGCAATTTCA 1301
Query 1280 ATTCCTCAAATCGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATAATA 1339
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1302 ATTCCTCAAATTGAGTGTTTCCAAGGTGCTATTCAGTTTGCAAGAACAGAAGGGATCATA 1361
Query 1340 CCCGCACCAGAACCGACTCACGCCATTGCTGCAACCATAAGAGAAGCTCTCCGATGCAAA 1399
||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||
Sbjct 1362 CCCGCACCAGAACCGACCCACGCCATTGCTGCAACCATAAGAGAGGCTCTCCGATGTAAA 1421
Query 1400 GAGACAGGAGAAGCAAAAGTGATACTAATGGCTATGTGTGGACATGGCCACTTCGACCTT 1459
||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1422 GAGACGGGAGAAGCAAAAGTGATACTAATGGCGATGTGTGGACATGGCCATTTCGACCTT 1481
Query 1460 GCCTCTTACGACAAGTATTTAAAAGGCGAGTTGATAGATTTATCATTCAGCGAAGAGAAG 1519
| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1482 ACTTCTTACGACAAGTATTTAAAAGGCGAGTTGGTGGATTTATCATTCAGCGAAGAGAAG 1541
Query 1520 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAGTGGCTCCATAACCA 1579
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1542 ATACGAGAGTCTTTGTCCAAGGTTCCTCATGTTGTTTAAGCTCGAATGGCCCCATAACCA 1601
Query 1580 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGTGACAGAAGTTAGGTTTATTCTTG 1639
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 1602 CGGGAAACCAATGTCCCATGTTCCAAACTAGACGTGAGACAGAAGTTAGGTTTAATCTTG 1661
Query 1640 GCTTTTGAAATAAAGAGAGAGGGAGA 1665
||||||||||| ||||| ||| ||||
Sbjct 1662 GCTTTTGAAATGAAGAGTGAGAGAGA 1687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83332904700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5