BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494125
Length=1435
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38510.1 | Symbols: | Rhomboid-related intramembrane serine... 2237 0.0
> AT5G38510.1 | Symbols: | Rhomboid-related intramembrane serine
protease family protein | chr5:15417733-15420606 REVERSE
LENGTH=1576
Length=1576
Score = 2237 bits (1211), Expect = 0.0
Identities = 1367/1442 (95%), Gaps = 12/1442 (1%)
Strand=Plus/Plus
Query 1 TAAACGTAATTTTCACAAGACACTGCTTCGTTTATTCGAACTCGCAATTCTTCCTAATCC 60
||||||||||||||||||| |||||||||| |||||||||||| ||||| ||||||||||
Sbjct 44 TAAACGTAATTTTCACAAGTCACTGCTTCG-TTATTCGAACTC-CAATTTTTCCTAATCC 101
Query 61 TCGCAACCACAAATCTTCAATCTTTAAGATTAGGATCAGG-TTCTTCGTTCAAAGGACCT 119
|||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 102 TCGCAACCACAAATCTTCAATCTTCAAGATTAGGATCAGGTTTCTTCGTTCAAAGGACCT 161
Query 120 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGGAGTATTGTTTGA 179
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 162 GAAGATGGCACTGTTTCCTCTTCACCATGAAGTCCCTTGTAAAGGAGAAGTATTGTTTGA 221
Query 180 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 222 TTCAAATGGTTTAAGACGTTTTTCGTCTGGTCTGAAACATAGAACAATGGCTGAAGCAAC 281
Query 240 CACGCTAGGCAGGGATTGTAGGATGAAGGA-TCGTCT-AAATTCAATACCGTTTTGTCAT 297
|||||| |||||||||||||||||||| || | | | ||| ||||| |||| ||||| |
Sbjct 282 CACGCTTGGCAGGGATTGTAGGATGAA-GAGTTATATGAAA-TCAATCCCGTATTGTCGT 339
Query 298 TCACCGAGAGGAAGGTTATGCTTGGTTAGGGCGTCATCAGAGAACAAGATTACCAAAAAG 357
||||| ||| |||||||||| || ||||| ||||||||||||||||||||||||||| ||
Sbjct 340 TCACCAAGAAGAAGGTTATGTTTAGTTAGAGCGTCATCAGAGAACAAGATTACCAAACAG 399
Query 358 AGACTTAAGCTGTTGGATTCTTACTTTGGGAAACTTCAAAATGACGATGAGAAGCCTTCT 417
|||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 400 AGACTTAAACTGTTGGATTCTTACTTTGGGAAACTTCAAAACGATGATGAGAAGCCTTCT 459
Query 418 ATCTCAACGGGAGATGATATTGATCGGAAAGCTGAACTCAATGCGGATAAAGAGTTGGAT 477
|||||||| ||||||||||||||||| |||||||||||||||| | || |||||||||||
Sbjct 460 ATCTCAACAGGAGATGATATTGATCGCAAAGCTGAACTCAATGTGAATGAAGAGTTGGAT 519
Query 478 TCTTTGAGTGTTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 537
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 520 TCTTTGAGTGCTTATCTTGACAAACTCCAAAAAGATGCAAAATCTAAAGGTTTAGTCTCG 579
Query 538 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 580 TCCACCTTGGACGTGGTAAAATCAGAAGGCGGTTCAGTAGCAAGCAAATTGAGAAAGACT 639
Query 598 GGTATTGAAAGCAATAATAGTCCTTTCCAGCAGCTTGATGATGATGATCAATCAGAAGAT 657
|||||||||| |||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct 640 GGTATTGAAAACAATAATAGTCCTTTCCAGCAGTTTGATGATGAAGATCAAGCAGAAGAT 699
Query 658 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATAAATGTCGGTGTGTGCTTGTTT 717
|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 700 ACATTGAACTTCTATGCTGTGAGCATATTAGCATCCATCAATGTTGGTGTCTGCTTGTTT 759
Query 718 GAAGCGGCAGCGCCAGTTAGGAATAACGATATGGGACTGCT-ATCACTCCCGTTGTTATA 776
|| |||||||||||||||||||| ||| |||||||||| || ||||||||| ||||||||
Sbjct 760 GAGGCGGCAGCGCCAGTTAGGAACAACAATATGGGACT-CTTATCACTCCCTTTGTTATA 818
Query 777 TGGAGCCAAGATAAATGATCTAATCCTGGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 836
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 819 TGGAGCAAAGATAAATGATCTAATCCTTGCTGGAGAATGGTGGAGGCTGGTCACACCCAT 878
Query 837 GTTTCTGCACTCTGGAGTTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 896
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 879 GTTTCTGCACTCTGGAATTCCTCATGTAGCCCTTAGCTCCTGGGCTCTGCTTACTTTTGG 938
Query 897 ACCAAAAGTCTGCCGTGACTATGGACTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 956
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 939 ACCAAAAGTCTGCCGTGACTATGGATTATTCACGTTTTGTCTCATTTACATTCTCGGAGG 998
Query 957 AGTCTCTGGTAATTTCATGAGCTTTCTTCATACACCAGATCCTACAGTTGGAGGAACTGG 1016
||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 999 AGTCTCTGGAAATTTCATGAGCTTTCTGCATACAGCAGATCCTACAGTTGGAGGAACTGG 1058
Query 1017 ACCAGCATTTGCATTAATAGGAGCTTGGCTCGTCGACCAAAATCAGAACAAGGAGATGAT 1076
|||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1059 ACCAGCATTTGCGTTAATAGGAGCTTGGCTCGTTGACCAAAATCAGAACAAAGAGATGAT 1118
Query 1077 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1119 CAAAAGCAACGAATATGAGGACTTGTTTCAGAAGGCCATTATAATGACAGGATTTGGTCT 1178
Query 1137 CATATTAAGCCATTTCGGCCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCCGG 1196
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1179 CATATTAAGCCATTTCGGTCCAATTGATGACTGGACAAATCTGGGAGCACTTATAGCAGG 1238
Query 1197 GATTGTATACGGATTCTTCACTTGTCCAGTGCTCCAACTTGGAAGAGA---AAGTGAAAG 1253
|||||||||||| || ||||||||||| ||||| |||||||| || | |||||||||
Sbjct 1239 GATTGTATACGGGTTTTTCACTTGTCCGGTGCTACAACTTGGTAGCGGCGGAAGTGAAAG 1298
Query 1254 ACAAGAAGGGATTGTAACGGTAGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1313
|||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1299 GCAAGAAGGGATTGTGACGGTTGGACCAGAGAAACAAAACAGCGCTGACCCGTGTAAATC 1358
Query 1314 GTTTCTGCTTTTCACAATCTTTGTCGCGGTTATTGTGACTTCTCTGCTACTTATTGGGGA 1373
||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 1359 GTTTCTGCTTTTCACAATCTTCGTCGCGGTTATTGTGACTTCTCTGCTACTGATTGGGGA 1418
Query 1374 CGGACCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATCTAGTGTATCAT 1433
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1419 CGGTCCATTGGACTTCCCAACGTACGATGATGTTGTGTATTCTCTCATTTAGTGTATCAT 1478
Query 1434 CA 1435
||
Sbjct 1479 CA 1480
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70732567905
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5