BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494127
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor 3... 1559 0.0
AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory ... 669 0.0
AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory fact... 399 2e-110
AT2G10450.1 | Symbols: | 14-3-3 family protein | chr2:4020305-... 191 1e-47
> AT5G38480.1 | Symbols: GRF3, RCI1 | general regulatory factor
3 | chr5:15409697-15411516 FORWARD LENGTH=1141
Length=1141
Score = 1559 bits (844), Expect = 0.0
Identities = 972/1030 (94%), Gaps = 23/1030 (2%)
Strand=Plus/Plus
Query 1 TCTCTTCTTATTCCATTTTTTCAAACCACTTGC-AAATTCGAATCAGATCTTCAAAC-Ga 58
||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 40 TCTCTTCTTATTCCATTTTTTCAAACCACTTGCAAAATTCGAATCAGATCTTC--TCTTC 97
Query 59 aaaagaaaaaaga-aaaGGATTTGCTCTAGATTGTTAAAATCGAAGATGTCGACTGAAGC 117
|| ||||||| | |||||||||||||||||||||| |||||||||||| | |
Sbjct 98 AATCGAAAAAAAAGAAAGGATTTGCTCTAGATTGTT-GAATCGAAGATGT---C----G- 148
Query 118 ATCAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTATGAAGA 177
| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 149 A-CAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAAGCTGAACGTTACGAAGA 207
Query 178 AATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAAGAACTCTCTGTTGA 237
||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 208 AATGGTTGAATTCATGGAGAAAGTTGCGAAAACTGTTGATGTTGAGGAACTTTCAGTTGA 267
Query 238 AGAGAGGAACCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTG 297
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 268 AGAGAGGAATCTTCTCTCTGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTG 327
Query 298 GAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAGGATCATGTTGC 357
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 328 GAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAAAGGGAACGAAGATCATGTTGC 387
Query 358 TATTATCAAGGATTACAGGGGAAAGATCGAAACCGAGCTTAGCAAAATCTGTGATGGGAT 417
|||||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 388 TATTATCAAGGATTACAGAGGAAAGATTGAATCCGAGCTTAGCAAAATCTGTGATGGGAT 447
Query 418 TTTGAATGTTCTTGAAGCTCATCTTATTCCATCTGCTTCACCTGCTGAATCTAAAGTGTT 477
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 448 TTTGAATGTTCTTGAAGCTCATCTTATTCCTTCTGCTTCACCAGCTGAATCTAAAGTGTT 507
Query 478 TTACCTAAAAATGAAGGGAGATTATCATAGGTATCTTGCCGAGTTTAAGGCTGGTGCTGA 537
||| || || |||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 508 TTATCTTAAGATGAAGGGTGATTATCATAGGTATCTTGCTGAGTTTAAGGCTGGTGCTGA 567
Query 538 GAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCAC 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 568 AAGGAAAGAAGCTGCTGAAAGCACTTTGGTTGCTTACAAGTCTGCTTCCGACATTGCCAC 627
Query 598 TGCTGAGTTAGCTCCCACTCACCCGATAAGGCTTGGTCTTGCCCTCAACTTCTCTGTGTT 657
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 628 TGCTGAGTTAGCTCCTACTCACCCGATAAGGCTTGGTCTTGCACTCAACTTCTCTGTGTT 687
Query 658 TTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCATTTGA 717
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 688 TTACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCGTTTGA 747
Query 718 TGATGCTATCGCTGAGTTGGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGAT 777
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 748 TGATGCAATCGCTGAGTTAGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGAT 807
Query 778 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 808 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGG 867
Query 838 AGATGAGATCAAGGAGGCATCGAAGCCCGAAGGTGCCGAGTGAACCTGAAGAAGAGGAA- 896
||||||||| ||||||||||| |||||||| |||||||||| |||| ||||||||||||
Sbjct 868 AGATGAGATTAAGGAGGCATCAAAGCCCGATGGTGCCGAGTAAACCCGAAGAAGAGGAAG 927
Query 897 A-TCATTTTATAATGGTAGAAA-CTTTCATGTGATAATCTGAGTGAGGGATAGCTCAGGA 954
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 928 AGTCATTTTATAATGGTAGAAAACTTTCATGTGATAATCTGAGTGAGGGATAGCTCAGGA 987
Query 955 TTCTTATAAG-GACACAGTTTTATTGTTGTTTGTTTGTTTGGAAAAACTACTTGCGATTT 1013
|||||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 988 TTCTTATAAGAGACACAGTTTTATTGTTGTTTGTTTGTTTTGAAA--CTACTTGCGATTT 1045
Query 1014 AT-ATTTCCT 1022
|| ||| |||
Sbjct 1046 ATCATT-CCT 1054
> AT5G16050.1 | Symbols: GRF5, GF14 UPSILON | general regulatory
factor 5 | chr5:5243745-5245820 REVERSE LENGTH=1162
Length=1162
Score = 669 bits (362), Expect = 0.0
Identities = 635/765 (83%), Gaps = 26/765 (3%)
Strand=Plus/Plus
Query 101 AAGATGTCGACTGAAGCATCAAGGGAAGAGAATGTTTACATGGCGAAATTAGCCGAACAA 160
|||||||| |||| | || ||||||||||||| ||| |||| || |||||||| |||
Sbjct 90 AAGATGTCTTCTGATTCGTCCCGGGAAGAGAATGTGTACTTGGCCAAGTTAGCCGAGCAA 149
Query 161 GCTGAACGTTATGAAGAAATGGTTGAATTCATGGAGAAAGTTGCGAAA-ACTGTTGATG- 218
||||| ||||| || ||||||||||| ||||||||||||||||| ||| || || || |
Sbjct 150 GCTGAGCGTTACGAGGAAATGGTTGAGTTCATGGAGAAAGTTGC-AAAGACCGTGGA-GA 207
Query 219 TTGAAGAACTCT-CTGTTGAAGAGAGGAACCTTC-TCTCTGTTGCTTACAAGAACGTGAT 276
|| ||||| | |||||||||||||||| | || | |||||||||||||||||||||||
Sbjct 208 CCGAGGAACT-TACTGTTGAAGAGAGGAATC-TCTTGTCTGTTGCTTACAAGAACGTGAT 265
Query 277 TGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGATTGAGCAGAAAGAAGAGAGCAA 336
||| || || |||||||| ||||| || || ||||| ||||||||||| ||||| ||| |
Sbjct 266 TGGTGCTAGGAGAGCTTCTTGGAGGATTATCTCTTCCATTGAGCAGAAGGAAGATAGC-A 324
Query 337 AGGG-AACGAG-GATCATGTTGCTATTATCAAGGATTACAGGGGAAAGATCGAAACCGAG 394
||| ||| || ||||||||| | ||||||||||||||||| || ||||| ||||| |||
Sbjct 325 GGGGCAAC-AGTGATCATGTTTCGATTATCAAGGATTACAGAGGCAAGATTGAAACTGAG 383
Query 395 CTTAGCAAAATCTGTGATGGGATTTTGAATGTTCTTGAAGCTCATCTTATTCCAT-CTGC 453
|| ||||| || |||||||| |||||||| ||||||| |||||||| ||||| | ||||
Sbjct 384 CTCAGCAAGATTTGTGATGGCATTTTGAACCTTCTTGAGGCTCATCTCATTCC-TGCTGC 442
Query 454 TTCACCT-GCTGAATCTAAAGTGTTTTACCTAAAAATGAAGGGAGATTATCATAGGTATC 512
||| | ||||| || ||||| |||||||| || |||||||||||||||||| |||| |
Sbjct 443 TTC-TTTGGCTGAGTCCAAAGTTTTTTACCTGAAGATGAAGGGAGATTATCATCGGTACC 501
Query 513 TTGCCGAGTTTAAGGCTGGTGCTGAGAGGAAAGAAGCTGCTGAAAGCACT-TTGGTTGCT 571
|||| || || ||| |||||||||||||||||||||||||||| |||||| ||| ||||
Sbjct 502 TTGCTGAATTCAAGACTGGTGCTGAGAGGAAAGAAGCTGCTGAGAGCACTCTTG-TTGCC 560
Query 572 TACAAGTCTGCTTCCG-ACATTGCCACT-GCTGAGT-TAGCTCCCACTCACCCGATAAGG 628
|||||||||||| | | | ||||| || ||||| | | |||||||||||||| || ||
Sbjct 561 TACAAGTCTGCT-CAGGATATTGCT-CTTGCTGA-TCTGGCTCCCACTCACCCAATCAGA 617
Query 629 CTTGGTCTTGCCCTCAACTTCTCTGTGTTT-TACTATGAAATCCTCAACTCGCCTGATCG 687
|| || ||||| || ||||||||||| ||| |||||||| || |||||||| |||||||
Sbjct 618 CTGGGGCTTGCTCTTAACTTCTCTGT-TTTCTACTATGAGATTCTCAACTCATCTGATCG 676
Query 688 TGCTTGCAGCCTCGCAAAGCAGGCATTTGATGATGCTATCGCTGAGTTGGATACATTGGG 747
||| || || |||||||||||||| |||||||| || ||| | ||| | || ||||||||
Sbjct 677 TGCGTGTAGTCTCGCAAAGCAGGCTTTTGATGAGGCAATCTCGGAGCTAGACACATTGGG 736
Query 748 TGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTCTTAGAGACAATCTCACTCT 807
|||||||||||||||||||||||| |||| ||||||||||| | ||||||||||| ||
Sbjct 737 AGAGGAATCATACAAGGACAGTACATTGATCATGCAGCTTCTCCGTGACAATCTCACCCT 796
Query 808 CTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCAAGGA 852
||||||||| || | | ||||||||| || ||||| ||||||||
Sbjct 797 CTGGACTTCTGACCTCAATGACGAAGCTGGTGATGATATCAAGGA 841
> AT4G09000.2 | Symbols: GRF1, GF14 CHI | general regulatory factor
1 | chr4:5775210-5777481 FORWARD LENGTH=1458
Length=1458
Score = 399 bits (216), Expect = 2e-110
Identities = 549/706 (78%), Gaps = 38/706 (5%)
Strand=Plus/Plus
Query 137 TACATGGCGAAATTAGCCGAACAAGCTGAACGTTATGAAGAAATGGTTGAATTCATGGAG 196
|||||||||||| | ||||||||||| || ||||| ||||||||||||||||||||||||
Sbjct 220 TACATGGCGAAACTCGCCGAACAAGCAGAGCGTTACGAAGAAATGGTTGAATTCATGGAG 279
Query 197 AAAGTTGCGAAAACTGTTGATGTTGAAGAACTCTCTGTTGAAGAGAGG-AACCTTCTCTC 255
||||| |||||| ||||||| || |||||| | || ||||| | | || || |||||
Sbjct 280 AAAGTCGCGAAAGCTGTTGACAAAGACGAACTCACCGTCGAAGA-ACGTAATCTCCTCTC 338
Query 256 TGTTGCTTACAAGAACGTGATTGGAGCGAGAAGAGCTTCGTGGAGAATCATTTCTTCGAT 315
|| |||||||| ||||| || ||||| | | |||||||||||||||||||| |||||
Sbjct 339 CGTCGCTTACAAAAACGTCATCGGAGCTCGTCGTGCTTCGTGGAGAATCATTTCATCGAT 398
Query 316 TGAGCAGAAAGAAGAGAG-CAAAG-GG-AACGAGGATCATGTTGCTATT-ATCAAG-GAT 370
|| || |||| || ||| | | || ||||| || || ||| | || ||| | ||
Sbjct 399 CGAACA-AAAGGAG-GAGTCTC-GCGGTAACGATGACCACGTTTCG-TTGATCC-GTGAC 453
Query 371 TACAGGGG-AAAGATCGAAACCGAGCTTAGCAAA-ATCTGTGATGGGATT-TTGAATG-T 426
||||| | ||| |||||||| || ||| | | |||||||| || || || || | |
Sbjct 454 TACAGAAGCAAA-ATCGAAACGGAACTTT-CTGATATCTGTGACGGAATCCTT-AA-GCT 509
Query 427 TCTTGA-AGCTCAT-CTTATTCCATCTGCTTCACCTGCTGAATCTAAAGTGTTTTACCTA 484
||| || | | || || |||| ||||| | ||| || || || |||||||| ||
Sbjct 510 TCTCGATA-CG-ATTCTCGTTCCCGCTGCTGCTTCTGGAGATTCGAAGGTGTTTTATCTG 567
Query 485 AAAATGAAGGGAGATTATCATAGGTATCTTGCC-GAGTTTAAGGCTGGTGCT-GAGAGGA 542
|| ||||| || |||||||||||||| |||| | ||||| || ||||| | |||||||
Sbjct 568 AAGATGAAAGGTGATTATCATAGGTA-CTTGGCTGAGTTCAAATCTGGT-CAAGAGAGGA 625
Query 543 AAGAAGCTGCTGAA-AGCACT-TTGGTTGCTTACAA-GTCTGCTTCCG-ACATTGCCACT 598
|||| ||||||||| | ||| || | |||||||| | ||||| | | | ||||| | |
Sbjct 626 AAGATGCTGCTGAACAT-ACTCTTACT-GCTTACAAAG-CTGCT-CAGGATATTGCTAAT 681
Query 599 GCTGAGTTAGCTCCCACTCACCCGATAAGGCTTGGTCTTGCCCTCAACTTCTCTGTGTTT 658
|||| || ||||| || || ||||| | ||||||||||| | |||||||||||||||
Sbjct 682 TCTGAATTGGCTCCAACGCATCCGATTCGTCTTGGTCTTGCGTTGAACTTCTCTGTGTTT 741
Query 659 TACTATGAAATCCTCAACTCGCCTGATCGTGCTTGCAGCCTCGCAAAGCAGGCATTTGAT 718
|||||||| || ||||| || || ||||||||||| | ||||| |||||||| ||||||
Sbjct 742 TACTATGAGATTCTCAATTCTCCAGATCGTGCTTGTAATCTCGCTAAGCAGGCGTTTGAT 801
Query 719 GATGCTATCGCTGAGTTGGATACA-TTGGGTGAGGAATCATACAAGGACAGTACACTGAT 777
|| || || ||||| |||||||| |||| ||| || ||||||||||||||||| ||||
Sbjct 802 GAAGCAATTGCTGAATTGGATACTCTTGG-TGAAGAGTCATACAAGGACAGTACTTTGAT 860
Query 778 TATGCAGCTTCTTAGAGACAATCTCACTCTCTGGACTTCAGATATG 823
||||||||||||| | || || ||||||||||||||||| ||||||
Sbjct 861 TATGCAGCTTCTTCGTGATAACCTCACTCTCTGGACTTCTGATATG 906
> AT2G10450.1 | Symbols: | 14-3-3 family protein | chr2:4020305-4020773
FORWARD LENGTH=249
Length=249
Score = 191 bits (103), Expect = 1e-47
Identities = 120/128 (94%), Gaps = 1/128 (1%)
Strand=Plus/Plus
Query 730 TGA-GTTGGATACATTGGGTGAGGAATCATACAAGGACAGTACACTGATTATGCAGCTTC 788
||| ||||||| |||||||||| |||| ||||||||||||||| ||||||||| || |||
Sbjct 56 TGATGTTGGATGCATTGGGTGATGAATTATACAAGGACAGTACCCTGATTATGAAGATTC 115
Query 789 TTAGAGACAATCTCACTCTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCA 848
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 116 TTAGAGACAATCTCACTTTCTGGACTTCAGATATGACTGACGAAGCAGGAGATGAGATCA 175
Query 849 AGGAGGCA 856
||||||||
Sbjct 176 AGGAGGCA 183
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5