BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494129
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38470.1 | Symbols: RAD23D | Rad23 UV excision repair protei... 2124 0.0
AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repa... 375 4e-103
> AT5G38470.1 | Symbols: RAD23D | Rad23 UV excision repair protein
family | chr5:15404642-15407711 FORWARD LENGTH=1426
Length=1426
Score = 2124 bits (1150), Expect = 0.0
Identities = 1281/1342 (95%), Gaps = 17/1342 (1%)
Strand=Plus/Plus
Query 48 ctAAACGATGAAGATTTTCGTGAAGACTCTCAGTGGTACGAACTTCGAGATCGAAGTTAA 107
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct 72 CTAAACGATGAAGATTTTCGTGAAGACTCTCAGTGGTTCGAACTTCGAGATCGAAGTAAA 131
Query 108 ACCTGCGGATACGGTTTCTGATGTTAAGAA-AGCTATAGAAACTGTTAAAGGTGCAGAAT 166
|||||| |||| ||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 132 ACCTGCAGATAAGGTTTCTGATGTTAA-AACGGCTATAGAAACTGTTAAAGGTGCAGAAT 190
Query 167 ACCCTGCTG-TGAAGCAGATGCTGATCCACCAAGGAAAGGTTCTAAAGGATGAGACCACA 225
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 191 ACCCTGCTGCT-AAGCAGATGCTGATCCACCAAGGAAAGGTTCTAAAGGATGAGACCACA 249
Query 226 TTGGAAGAGAACAATGTTGTTGAGAACAGTTTCATTGTTATCATGTTGTCCAAGACCAAG 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TTGGAAGAGAACAATGTTGTTGAGAACAGTTTCATTGTTATCATGTTGTCCAAGACCAAG 309
Query 286 GCTTCGTC-AAGTGGGGCATCAACTGCATCTGCACCAGCACCTAGTGCTACCCAGGCACA 344
||||| || ||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 310 GCTTC-TCCAAGTGGGGCATCAACCGCATCTGCACCAGCACCTAGTGCTACACAGCCACA 368
Query 345 GACAGTTGCTACACCTCAGGTTTCTGCTCCAACTGTCTCAGTTCCAGAGCCTACAAGTGG 404
|||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||||||
Sbjct 369 GACAGTAGCTACACCTCAGGTTTCTGCTCCTACTGCCTCAGTTCCAGTTCCTACAAGTGG 428
Query 405 AACTGCAACCGCTGCAGCTCCAGCTGCTGCTGCTTCGGTTCAAACAGATGTGTATGGTCA 464
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 429 AACTGCAACCGCTGCAGCTCCAGCTACTGCTGCTTCGGTTCAGACAGATGTGTATGGTCA 488
Query 465 AGCAGCGTCAAACCTTGTTGCTGGAACTACTCTAGAGTCCACTGTTCAGCAAATTCTTGA 524
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 489 AGCAGCATCAAACCTTGTTGCTGGAACTACTTTAGAGTCCACTGTTCAGCAAATTCTTGA 548
Query 525 CATGGGTGGAGGTAGTTGGGACCGTGACACTGTTGTTCGTGCTCTGAGAGCTGCCTTCAA 584
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 549 TATGGGTGGAGGTAGTTGGGACCGTGACACTGTTGTTCGTGCTCTGAGAGCTGCGTTCAA 608
Query 585 CAATCCTGAAAGAGCCGTTGAATATCTGTACTCAGGTATCCCTGCTCAAGCTGAAATCCC 644
||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 609 CAATCCTGAAAGAGCTGTTGAATACCTGTACTCGGGTATCCCTGCTCAAGCTGAAATCCC 668
Query 645 GCCAGTTGCTCAAGCCCCATCTACTGGTGAACAGCCAGCAAATCCTCAAGCACAACCCCA 704
|||||||||||||||||| ||||||| |||||| |||| ||||||| |||||| |||||
Sbjct 669 ACCAGTTGCTCAAGCCCCAGCTACTGGGGAACAGGCAGCCAATCCTCTAGCACAGCCCCA 728
Query 705 ACAAGCAGC---TCCGGTAGCTGCAACTGGTGGTCCAAACGCAAATCCATTAAACCTGTT 761
||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 ACAAGCAGCAGCTCCAGCAGCTGCAACTGGTGGTCCAAACGCAAATCCATTAAACCTGTT 788
Query 762 CCCCCAGGGCATGCCCGCTGCAGATGCTGCTGCTGGAGCTGGTAATCTTGATTTCCTGCG 821
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 789 CCCCCAGGGCATGCCCGCTGCAGATGCTGGTGCTGGAGCTGGTAATCTTGATTTCCTGCG 848
Query 822 TAACAGTCAGCAGTTCCAAGCCTTGCGAGCTATGGTACAAGCAAACCCACAAATTCTACA 881
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTACAAGCAAACCCACAAATTCTACA 908
Query 882 GCCTATGCTTCAGGAGCTCGGTAAACAAAACCCGCAGCTTGTGCGACTAATTCAAGAGCA 941
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 909 GCCTATGCTTCAGGAGCTCGGTAAACAAAACCCCCAGCTTGTGCGACTAATTCAAGAGCA 968
Query 942 CCAGGCTGACTTCCTACGCTTGATAAATGAGCCCGTCGAGGGAGAAGAGAATGTTATGGA 1001
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 969 CCAGGCTGACTTCCTACGCTTGATAAACGAACCTGTCGAGGGAGAAGAGAATGTTATGGA 1028
Query 1002 ACAGTTGGAAGCAGCAATGCCACAAGCTGTTACAGTTACACCTGAAGAGCGTGAAGCCAT 1061
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1029 ACAGTTGGAAGCAGCAATGCCACAAGCTGTTACCGTTACACCTGAAGAGCGTGAAGCCAT 1088
Query 1062 TGAACGGCTTGAAGCGATGGGGTTTGATCGTGCGATGGTCTTAGAAGTGTTCTTTGCGTG 1121
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1089 TGAACGGCTTGAAGGGATGGGGTTTGATCGTGCGATGGTCTTGGAAGTGTTCTTTGCGTG 1148
Query 1122 TAACAAGAATGAAGAACTTGCAGCGAATTACCTTCTAGATCACATGCATGAGTTTGAGGA 1181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1149 TAACAAGAATGAAGAACTTGCAGCTAATTACCTTCTAGATCACATGCATGAGTTTGAAGA 1208
Query 1182 CCAATAAACAGAGCAAATCCATTCCTCCTCCCTAAACTCAGAGACCCAtctttctgtttc 1241
||||||||||||||||||||||||||| | ||||||||||| || |||||||||||||
Sbjct 1209 TCAATAAACAGAGCAAATCCATTCCTCC-CTCTAAACTCAGA--CC-ATCTTTCTGTTTC 1264
Query 1242 tttttcttcttctttttAATATGATAATCTCTTCTCCAATGCCATTTGACAGTTTCATGT 1301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1265 TTTTTCTTCTTCTTTTTAATATGATAATCTCTTCTCCAATGCCATTTGACAGTTTCATGT 1324
Query 1302 TTATGTTCATGGGAGTTGATGTGTTTATGTTA-TACATTTAAAACTATCATAGTTTATCT 1360
|||||||||||||||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 1325 TTATGTTCATGGGAGTTGATGTGTTTATGTTACTA--TT-AAAACTATCATAGTTTATCT 1381
Query 1361 GGTTTGAAGATGCTCCTCTTTT 1382
||||||||||||||||||||||
Sbjct 1382 GGTTTGAAGATGCTCCTCTTTT 1403
> AT3G02540.1 | Symbols: RAD23-3, RAD23C | Rad23 UV excision repair
protein family | chr3:532808-536342 REVERSE LENGTH=1738
Length=1738
Score = 375 bits (203), Expect = 4e-103
Identities = 583/761 (77%), Gaps = 48/761 (6%)
Strand=Plus/Plus
Query 451 GATGTGTATGGTCAAGCAGCGTCAAACCTTGTTGCTGGAACTACTCTAGAGTCCACTGTT 510
||||| || || |||||||| ||||| || | ||||||| || | ||||| || ||
Sbjct 705 GATGTTTACGGACAAGCAGCATCAAATCTAGCCGCTGGAAGTAATTTAGAGAGTACCATT 764
Query 511 CAGCAAATTCTTGACATGGGTGGAGGTAGTTGGGACCGTGACACTGTTGTTCGTGCTCTG 570
||||| |||||||||||||||||||| | ||||| ||||| |||||||| | ||| ||
Sbjct 765 CAGCAGATTCTTGACATGGGTGGAGGAACCTGGGATCGTGAGACTGTTGTCCTTGCACTT 824
Query 571 AGAGCTGCCTTCAACAATCCTGAAAGAGCCGTTGAATATCTGTACT-CAGGTATCCCTGC 629
| ||||| || ||||| ||||||||||| || |||||||| || | | || |||||||
Sbjct 825 CGTGCTGCATTTAACAACCCTGAAAGAGCTGTGGAATATCTTTA-TACTGGGATCCCTGA 883
Query 630 TCAAGCTGAAATCCCGCCAGTTGCTCAAG-CC-CCATCTACTGGTGAACAGCCAGCAAAT 687
||||||||| | || |||||||| | | || ||| ||| || | |||||| ||||||
Sbjct 884 GCAAGCTGAAGTTCCACCAGTTGC-C-CGTCCTCCAGCTAGTGCCGGACAGCCTGCAAAT 941
Query 688 CCTCAAGCACA-ACCCCAACAAGCAGCTCCGGTAGCTGCAACTGGTGGTCCAAACGCAAA 746
|||| |||||| | | |||||| | || | | | | |||| ||||||| || |||||
Sbjct 942 CCTCCAGCACAGA-CTCAACAACCTGCAGCAGCACCCGCAA---GTGGTCCTAATGCAAA 997
Query 747 TCCATTAAACCTGTTCCCCCAGGGCATGCCCGCTG-CAGATGCTGCTGCTGGAGCTGGTA 805
||| ||| | || ||||| |||||| |||| || || | | |||| ||||| |
Sbjct 998 TCCGTTAGATCTCTTCCCACAGGGCTTGCCAAATGTTGGA-GGAAATCCTGGTGCTGG-A 1055
Query 806 A-TCTTGATTTCCTGCGTAACAGTCAGCAGTTCCAAGCCT-TGCGAGCTATGGTACAAGC 863
| ||||| ||| |||| ||||| || |||||||||| || ||||||| ||||| |||||
Sbjct 1056 ACACTTGACTTCTTGCGCAACAGCCAACAGTTCCAAG-CTCTGCGAGCAATGGTGCAAGC 1114
Query 864 AAACCCACAAATTCTACAGCCTATGCTTCAGGAGCTCGGTAAACAAAACCCGCAGCTTG- 922
|||||| ||| |||| ||||| ||||||||||| || || ||||| ||||| | ||||
Sbjct 1115 AAACCCTCAAGTTCTGCAGCCCATGCTTCAGGAACTGGGAAAACAGAACCC-AAACTTGA 1173
Query 923 TGCGACTAATTCAAGAGCACCAGGCTGACTTCCTACGCTTGATAAATGAGCCCGTCGAGG 982
|||| | |||||||| ||||| ||||||||| ||||||| || ||||| ||||| || |
Sbjct 1174 TGCGGTTGATTCAAGACCACCAAGCTGACTTCTTACGCTTAATCAATGAACCCGTTGAAG 1233
Query 983 GA-GAAGAGAATGTTATGG-AA-C-AGTTGG---AA--GCAGC---AATG-C-CA--CA- 1025
|| | ||||| | ||| || | |||| || || || |||| | || ||
Sbjct 1234 GAGGGGGAGAAAG---TGGCAACCTCCTTGGCCAAATGGCGGCGGGAATGCCACAGCCAC 1290
Query 1026 A-GCTG-TTAC-AGTTACACCTGAAGAGCGTGAAGCCATTGAACGGCTTGAAGCGATGGG 1082
| || | || | ||| |||| ||| || ||||||||||||||||||||||||||||||||
Sbjct 1291 AGGC-GATT-CAAGTCACACATGAGGAACGTGAAGCCATTGAACGGCTTGAAGCGATGGG 1348
Query 1083 GTTTGATCGTGCGAT-GGTCTTAGAAGTGTTCTTTGCGTGTAACAAGAATGAAGAACTTG 1141
||||| | || || ||| || ||||||||||||||||| |||||||||||||| |||
Sbjct 1349 ATTTGAGAGAGC-ATTGGTGTTGGAAGTGTTCTTTGCGTGCAACAAGAATGAAGAG-TTG 1406
Query 1142 -CAGCGAATTACCTTCTAGATCACATGCATGAGTTTGAGGA 1181
| || || || |||||||||||||||||||| || |||||
Sbjct 1407 GCTGCAAACTATCTTCTAGATCACATGCATGAATTCGAGGA 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68071939020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5