BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494131
Length=1934
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38460.1 | Symbols: | ALG6, ALG8 glycosyltransferase family... 2843 0.0
> AT5G38460.1 | Symbols: | ALG6, ALG8 glycosyltransferase family
| chr5:15398284-15401026 REVERSE LENGTH=1949
Length=1949
Score = 2843 bits (1539), Expect = 0.0
Identities = 1826/1960 (93%), Gaps = 38/1960 (2%)
Strand=Plus/Plus
Query 1 AGAGAAAAACTAAACGGAGAAGACAAACAAAAC-AACGATGCCGAAGAAGAAGCCGGCGA 59
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 2 AGAAAAAAACTAAACGGAGAAGACAAACAAAACAAAGGATGCCGAAGAAGAAGCCGGCGA 61
Query 60 AACATTCCGGCGACGATGACATCACCATTCCGGTATCACCACAAACCGGAACTTTAATTG 119
||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 62 AACATTCCGGCGAAGATGACATCACCATTCCGGTATCACCACAAACCGGATCTTCGATTG 121
Query 120 ATACCTGGTGGTGGTTAGCACATAAAGGAACCACCACTTCATTTCTCTGCATTTCCCTCT 179
|||| ||||||||| || |||||||||||||||| ||||||||||||||||| |||||||
Sbjct 122 ATACTTGGTGGTGGCTAACACATAAAGGAACCACAACTTCATTTCTCTGCATCTCCCTCT 181
Query 180 TCGCATTACTGATCCGATCTGCTGTATCAATGTACCCATACTCCGGCGCCGGAATACCAC 239
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||| || |
Sbjct 182 TCGCATTACTGATCCGATCTGCTGTAACAATGTATCCATACTCCGGCGCCGGAATTCCTC 241
Query 240 CTAAATTCGGCGATTTCGAAGCTCAAAGACATTGGATGGAGATAACCACAAATCTTCCAG 299
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 242 CTAAATTCGGCGATTTCGAAGCTCAGAGACATTGGATGGAGATAACCACAAATCTTCCAG 301
Query 300 TTATCAATTGGTATAGAAATGGCACTTACAACGATCTCACTTACTGGGGATTAGATTATC 359
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTATCGATTGGTATAGAAATGGCACTTACAACGATCTCACTTACTGGGGATTAGATTATC 361
Query 360 CTCCTTTAACTGCTTATCAAAGTTATATCCATGGAATCTTCCTCCGAATCTTCAACCCTG 419
||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||
Sbjct 362 CTCCTTTAACTGCTTATCAAAGTTACATCCATGGAATCTTCCTCCGATTCTTCAATCCTG 421
Query 420 AATCTGTTGCTCTTCTAAGCTCTCGTGGTCACGAATCTTATCTTGGAAAATTGTTGATGA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 AATCTGTTGCTCTTCTAAGCTCTCGTGGTCACGAATCTTATCTTGGAAAATTGTTGATGA 481
Query 480 GATGGACAGTTTTATCGTCTGATG-TTCTCATATTTTTCCCAGCTGCTCTCTTTTTTGTG 538
|||||||||||||||||||||||| || |||||||||||||||||||||| ||||| |||
Sbjct 482 GATGGACAGTTTTATCGTCTGATGCTT-TCATATTTTTCCCAGCTGCTCTGTTTTTCGTG 540
Query 539 TTAGTGTACCATAGGAATCGAATTAGGAGTGGTAAGAGTGAAGTAGCATGGCACATTGCT 598
|| ||||||||||||||||||| |||| |||||||||||||||| || ||||| ||||||
Sbjct 541 TTGGTGTACCATAGGAATCGAACTAGGGGTGGTAAGAGTGAAGTGGCTTGGCATATTGCT 600
Query 599 ATGATTCTCTTAAACCCGTGTTTAATCGTCATTGATCATGGTCATTTTCAGTACAATTGT 658
||||||||||||||||| || || ||| |||||||||| |||||||||||||||||||||
Sbjct 601 ATGATTCTCTTAAACCCTTGCTTGATCCTCATTGATCACGGTCATTTTCAGTACAATTGT 660
Query 659 ATCAGTTTGGGACTTACTGTCGGTGCTATTGCTGCGGTACTATGTGAGAGCGAGGTTCTC 718
||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATCAGCTTGGGACTTACAGTTGGTGCTATTGCTGCGGTACTATGTGAGAGCGAGGTTCTC 720
Query 719 ACTTGTGTTTTGTTCAGTCTAGCTCTCAGTCATAAACAGATGAGTGCATACTTTGCTCCT 778
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 721 ACTTGTGTCTTGTTCAGTCTAGCCCTCAGCCATAAACAGATGAGTGCATACTTTGCTCCT 780
Query 779 GCCTTTTTCAGCCATCTATTCGGTAAATGCCTAAGAAGGAAAAACCC-AGTA-TTTGCTG 836
|||||||||||||||||| | ||||||||||||||| |||| | ||| | || ||| |||
Sbjct 781 GCCTTTTTCAGCCATCTACTGGGTAAATGCCTAAGACGGAAGAGCCCTA-TACTTT-CTG 838
Query 837 TGATTAAGCTTGGAATTGCAGTCATAGTGACATTTGTTATTGTTTGGTGGCCATATTTGC 896
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 839 TGATTAAGCTTGGAATTGCAGTCATAGTGACATTTGTTATTTTTTGGTGGCCATATGTGC 898
Query 897 ATTCTTTGGACGACTTCTTAATGGTTCTCTCCCGTCTTGCTCCATTTGAGAGGGGAATAT 956
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATTCTTTGGACGACTTCTTAATGGTTCTCTCCCGTCTTGCTCCATTTGAGAGGGGAATAT 958
Query 957 ACGAGGATTACGTGGCAAATTTCTGGTGCACCACTTCCATACTCATAAAATGGAAAAAAC 1016
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 959 ACGAGGATTACGTGGCAAATTTCTGGTGCACTACTTCCATACTCATAAAATGGAAAAATC 1018
Query 1017 TGTTCACAACACAATCCCTCAAGTCTATCAGCTTAGCTGCAACTATATTGGCTTCTCTCC 1076
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1019 TGTTCACAACACAATCCCTCAAGTCTATCAGCTTAGCTGCAACTATATTGGCTTCTCTTC 1078
Query 1077 CTTCAATGGTTCAGCAAATCTTGTCACCAAGCAATGAAGGTTTCCTATATGGCTTGCTCA 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1079 CTTCAATGGTTCAGCAAATCTTGTCACCAAGCAATGAAGGTTTCCTATATGGCTTGCTCA 1138
Query 1137 ACAGTTCAATGGCTTTCTACTTGTTTTCCTTCCAAGTGCATGAGAAATCAATCCTGATGC 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 ACAGTTCAATGGCTTTCTACTTGTTTTCCTTCCAAGTGCATGAGAAATCAATCCTGATGC 1198
Query 1197 CTTTTCTCTCTGCAACACTATTAGCTGTCAAACTCCCTGACCATTTCAGTCATCTAACCT 1256
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||||
Sbjct 1199 CTTTTCTCTCCGCAACACTATTAGCTCTCAAACTACCTGACCATTTCAGTCATTTAACCT 1258
Query 1257 ATTACGCTCTCTTCTCGATGTTCCCTCTTCTTTGCCGTGACAAACTCTTGATCCCTTACT 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1259 ATTACGCTCTCTTCTCGATGTTCCCTCTTCTTTGCCGTGACAAACTCTTGATCCCTTACT 1318
Query 1317 TAACACTATCTTTTCTCTTCACCATCATCTATCATTCACCCGGGAATCACCATTCTATAC 1376
||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||
Sbjct 1319 TAACACTATCTTTTCTCTTCACCGTCATCTATCATTCACCCGGGAATCACCATGCGATAC 1378
Query 1377 AGAAAACCAACGTTTTATGTTTCTCCTTTAAAAACTTTCCGGGTTATGTTTTCTTACTAA 1436
|||||||| |||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct 1379 AGAAAACCGACGTTTCATTTTTCTCCTTTAAAAACTTCCCGGGTTATGTTTTCTTACTAC 1438
Query 1437 GAACCCATTTCTTCATCTCCGTAGTTCTTCATGTCCTTTACCTTACCACTCAACCTCCTC 1496
||||||||||||||||||||||||||||||||||||| || ||||||| | |||||||||
Sbjct 1439 GAACCCATTTCTTCATCTCCGTAGTTCTTCATGTCCTCTATCTTACCATTAAACCTCCTC 1498
Query 1497 AAAAGTACCCTTTCCTATTCGAAGCACTGATCATGATTCTCTGTTTCTCATACTTTATAA 1556
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AGAAGTACCCTTTCCTATTCGAAGCACTGATCATGATTCTCTGTTTCTCATACTTTATAA 1558
Query 1557 TGTTTGCCATTTACACCAACTATACGCAGTGGACTTTGTCAAGTCATTTCAGG-TCCTTT 1615
|||||||| ||||||||||||||||||||||||||||||||||||||||| || |||| |
Sbjct 1559 TGTTTGCCTTTTACACCAACTATACGCAGTGGACTTTGTCAAGTCATTTC-GGATCCTCT 1617
Query 1616 GATAAAGAAAAGAAACACATCTGAAGAGCAAGGTTGTTTGATTCGGTTCCAtttttgttt 1675
|||||||||||||| || ||||||||||||||||||||| | ||||||||||||||||||
Sbjct 1618 GATAAAGAAAAGAAGCAAATCTGAAGAGCAAGGTTGTTTAACTCGGTTCCATTTTTGTTT 1677
Query 1676 tctttgtctttttGGCTA-A-ATTGAATGTAGTTTAGGGTCTTTACCGAACCAAGTCAAG 1733
||| |||||||||| ||| | ||| ||||||| ||||||||||||||||||||| || |
Sbjct 1678 TCTCTGTCTTTTTGCCTATAGATTTAATGTAGCTTAGGGTCTTTACCGAACCAACTCC-G 1736
Query 1734 ATCATTACAGTAGAATCTAGCTAGACAGAACCGGTGGTTTATTATGAGAGTTGTTGTAAT 1793
||||| ||||||||||| |||||||||||| |||||||||| || ||| |||||||| |
Sbjct 1737 ATCATCACAGTAGAATCGAGCTAGACAGAAACGGTGGTTTAACATCAGACTTGTTGTATT 1796
Query 1794 TGGTCCAGATCT-ACTAAATGTTGGTATATACTATATTCCAATGCCTATACATTGTATTA 1852
|||||||| | | ||||||||||||| |||||||||||||| |||| ||||| | |
Sbjct 1797 TGGTCCAGGTTTTACTAAATGTTGGT-----CTATATTCCAATGCGTATAAATTGT-TGA 1850
Query 1853 TGACTTAGATTTCAAAATTT-----------AA-----GG--TAGAGATTGAACCTTTTA 1894
|||| ||| ||||||||||| || || |||||||| |||||| |
Sbjct 1851 TGACGTAGGTTTCAAAATTTGGGGTGGTTTCAAAAATTGGGGTAGAGATTTTACCTTT-A 1909
Query 1895 TGAAAGGAAACGTAAAGTTTTAATGAAATTTTGTGTTGTG 1934
||||||||||||||| ||||||||||||||||||||||||
Sbjct 1910 TGAAAGGAAACGTAAGGTTTTAATGAAATTTTGTGTTGTG 1949
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95782639860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5