BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494132
Length=1703
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38450.1 | Symbols: CYP735A1 | cytochrome P450, family 735, ... 2532 0.0
> AT5G38450.1 | Symbols: CYP735A1 | cytochrome P450, family 735,
subfamily A, polypeptide 1 | chr5:15393754-15397279 REVERSE
LENGTH=1849
Length=1849
Score = 2532 bits (1371), Expect = 0.0
Identities = 1529/1606 (95%), Gaps = 7/1606 (0%)
Strand=Plus/Plus
Query 1 CGAATCTTTGTTGCTGG-A-Ca-aaaa-caaaaa-ccaaaaaTGTTGCTTACAATATTAA 55
||||||||||||||||| | | |||| ||||| ||||||||||||||||| |||||||
Sbjct 6 CGAATCTTTGTTGCTGGAAGAAGAAAAGAAAAAACCCAAAAATGTTGCTTACTATATTAA 65
Query 56 AATCACTCCTCGTGATATTCGTGACCATGATATTGAGAGTTTTATACGACACCATATCGT 115
||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 66 AATCACTCCTCGTGATATTCGTGACTACGATATTGAGAGTTTTATACGACACCATATCGT 125
Query 116 GCTACTGGCTAACACCTAGACGAATCAAGAAGATCATGGAACGGCAAGGCGTAACGGGTC 175
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 126 GCTACTGGCTAACACCTAGACGAATCAAGAAGATCATGGAACAGCAAGGCGTAACGGGTC 185
Query 176 CTAAACCGCGTCCGTTAACCGGAAATATCCTTGAAATCTCGGCCATGGTTTCGCAATCCG 235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 CTAAACCGCGTCCGTTAACCGGAAATATCCTTGAAATCTCGGCCATGGTTTCGCAATCCG 245
Query 236 CTTCCAAGGATTGTGACTCTATTCACCATGACATCGTCGGTCGCCTTCTCCCGCATTACG 295
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 246 CTTCCAAGGATTGTGACTCTATTCACCATGACATCGTCGGCCGCCTTCTCCCGCATTACG 305
Query 296 TTTCTTGGTCAAAACAATACGGGAAGAGATTTATTGTGTGGAACGGGACGGATCCTCGGC 355
|| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 306 TTGCTTGGTCCAAACAATACGGGAAGAGGTTTATTGTGTGGAACGGGACGGATCCTCGGC 365
Query 356 TTTGCTTAACGGAAACGGAATTGATAAAGGAGTTGCTAATGAAACACAACGGTGTAAGTG 415
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 366 TTTGCTTAACGGAAACGGAATTGATAAAGGAGTTGCTGATGAAACACAACGGTGTTAGTG 425
Query 416 GAAGATCGTGGCTACAACAACAAGGGACTAAGAACTTTATCGGCCGCGGTCTCCTTATGG 475
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 426 GAAGATCGTGGCTACAACAACAAGGGACTAAGAATTTTATCGGTCGCGGTCTCCTAATGG 485
Query 476 CTAATGGCCAAGATTGGCACCACCAACGCCACCTTGCTGCACCGGCATTTACCGGAGAAA 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 486 CTAATGGCCAAGATTGGCACCACCAACGCCACCTTGCTGCACCGGCATTTACCGGAGAAA 545
Query 536 GACTCAAGGGATACGCACGGCACATGGTGGAGTGCACAAGCAAGCTAGTGGAGAGGCTGA 595
||||||||||||||||| |||| |||||||||||||||||||||||||| |||||| |||
Sbjct 546 GACTCAAGGGATACGCAAGGCATATGGTGGAGTGCACAAGCAAGCTAGTTGAGAGGTTGA 605
Query 596 GGAAGGAAGTTGGGGAAGGAGGATGTGAGTTAGAGATAGGAGAAGAGATGCATAAACTCA 655
||||||||||||||||||||| | |||| | ||||||||||| ||||||||||||||||
Sbjct 606 GGAAGGAAGTTGGGGAAGGAGCAAATGAGGTGGAGATAGGAGAGGAGATGCATAAACTCA 665
Query 656 CTGCTGATATTATATCGAGGACGGAATTT-GGAAGTAGCTTTGAGAAAGGCAAAGAGCTT 714
| |||||||||||||||||||| || || ||||| ||||||||||||||||||||||||
Sbjct 666 CGGCTGATATTATATCGAGGACA-AAGTTCGGAAGCAGCTTTGAGAAAGGCAAAGAGCTT 724
Query 715 TTTAACCACCTCACTGTCCTCCAGCGCCGTTGCGCTCAAGCCACCCGCCACCTCTGCTTT 774
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 725 TTCAACCACCTCACTGTCCTCCAGCGCCGTTGCGCTCAAGCCACCCGCCACCTCTGCTTT 784
Query 775 CCCGGCAGCCGGTTTCTTCCAAGCAAATACAACAGAGAGATCAAGTCTCTGAAAAAGGAA 834
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 785 CCCGGCAGCCGGTTTCTTCCAAGCAAATACAACAGAGAGATCAAGTCTCTGAAAAAAGAA 844
Query 835 GTGGAACGTTTGTTGATTGAGATCATACAAAGCCGCCGAGACTGCGCTGAGATGGGTCGA 894
|| || ||||||||||||||||||||||||||| | |||||||||||||| |||||| |
Sbjct 845 GTTGAGCGTTTGTTGATTGAGATCATACAAAGCAGGCGAGACTGCGCTGAAATGGGTAGG 904
Query 895 AGCAGTACTCACGGTGACGACCTTCTCGGGCTTCTCTTGAATGAAATGGATAGCGACAAG 954
|| || ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 905 AGTAGCACTCACGGTGACGACCTTCTCGGGCTTCTCTTGAACGAAATGGATATTGACAAG 964
Query 955 AACAATAACAATAACAACAACAATCTTCAGTTGATAATGGATGAATGCAAGACATTCTTC 1014
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 AACAATAACAATAACAACAACAATCTTCAGTTGATAATGGATGAATGCAAGACATTCTTC 1024
Query 1015 TTTGCTGGCCATGAAACCACGGCTTTGCTCCTCACATGGACAATGATGCTCCTCGCCGAT 1074
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1025 TTTGCTGGCCATGAAACCACGGCTTTGCTCCTCACATGGACAACAATGCTCCTCGCCGAT 1084
Query 1075 AATCCCACATGGCAGGAAAAGGTCCGTGAGGAGGTTAGGGAGGTCTTTGGCCGCAATGGC 1134
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1085 AATCCCACATGGCAGGAAAAAGTCCGTGAGGAGGTCAGGGAGGTCTTTGGCCGCAATGGC 1144
Query 1135 CTTCCCTCGGTCGATCAACTATCCAAGCTAACCTCGTTAAGCAAAGTGATTAACGAGTCA 1194
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1145 CTTCCCTCAGTCGATCAACTATCTAAGCTAACCTCGTTAAGCAAAGTGATTAACGAGTCA 1204
Query 1195 CTAAGACTTTACCCTCCAGCTACTCTTCTACCAAGGATGGCATTTGAAGATTTAAAACTA 1254
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1205 CTAAGACTTTACCCTCCAGCTACTCTTCTACCAAGGATGGCATTTGAAGATCTAAAACTA 1264
Query 1255 GGTGATCTAACAATTCCCAAAGGTCTATCAATATGGATACCGGTTCTTGCGATCCATCAT 1314
||||||||||| ||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1265 GGTGATCTAACCATTCCTAAAGGTTTATCAATATGGATACCGGTTCTTGCTATCCATCAC 1324
Query 1315 AGTGAAGAATTATGGGGTAAAGACGCAAACCAATTCAACCCCGAACGTTTTGGAGGCAGA 1374
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1325 AGTGAAGAATTATGGGGTAAAGACGCGAACCAATTCAATCCCGAACGTTTTGGAGGCAGA 1384
Query 1375 CCATTCGCGGCTGGTCGACATTTTATCCCATTTGCAGCTGGTCCACGAAACTGCATCGGA 1434
||||||||| ||||||| ||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 1385 CCATTCGCGTCTGGTCGCCATTTCATCCCATTTGCAGCCGGTCCACGGAACTGCATCGGA 1444
Query 1435 CAACAATTTGCGTTGATGGAAGCAAAAATAATACTAGCGACGCTAATTTCCAAGTTTAAC 1494
||||| ||||||||||||||||| ||||||||| |||| ||| ||||||| |||||||||
Sbjct 1445 CAACAGTTTGCGTTGATGGAAGCTAAAATAATATTAGCCACGTTAATTTCAAAGTTTAAC 1504
Query 1495 TTCACAATATCAAAGAATTATAGGCATGCCCCAATCGTTGTGCTTACTATAAAACCCAAG 1554
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1505 TTCACAATATCAAAGAATTATAGGCATGCCCCAATCGTTGTGCTTACTATAAAACCTAAG 1564
Query 1555 TATGGAGTTCAAGTGATATTGAAGCCATTGGATTCATGAGGATTTT 1600
||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1565 TATGGAGTTCAAGTGATATTGAAGCCATTGGTTTCATGAGGATTTT 1610
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84186313965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5