BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494134
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38435.1 | Symbols: SPH8 | S-protein homologue 8 | chr5:1538... 704 0.0
AT5G38440.1 | Symbols: | Plant self-incompatibility protein S1... 429 1e-119
AT2G23142.1 | Symbols: | Plant self-incompatibility protein S1... 122 2e-27
> AT5G38435.1 | Symbols: SPH8 | S-protein homologue 8 | chr5:15388045-15388656
FORWARD LENGTH=612
Length=612
Score = 704 bits (381), Expect = 0.0
Identities = 432/456 (95%), Gaps = 5/456 (1%)
Strand=Plus/Plus
Query 1 GCAATGCATAGTCTCTCGTGGTTTCTGCTCGTCATTGGATTGTCCGTAGGGTTGAGTAAC 60
|||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
Sbjct 33 GCAATGCATAGTCTCTCGTGGTTTCTCCTCGTCATTGGATTATCCGTAGGGTTGAGTAGC 92
Query 61 GCAAAGTGGAATGAGAAAAACGCTGTCTTCTTTAAGAATTCTCTTGGTCGGAACAAAGTC 120
| ||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 93 GGAAAGTGGAATGAGAAAAACTCTGTCATCTTTACGAATTCTCTTGGTCGGAACAAAGTC 152
Query 121 TTGAAAGTAAATTGCATATCAAATGACGACAATCTAGGCTTCCACTTTTTGCGTCC-TGG 179
|||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||
Sbjct 153 TTGAAAGTAAATTGCATATCAAATGATGACAATCTAGGCTTCCACTTTTTGCG-CCATGG 211
Query 180 AGAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCT 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 212 ACAAACCTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCT 271
Query 240 ATGGCAAGGCCCTGATTTCAAGTTGCATGCATCATTTATGGCATATGAAGGTGGTGGTTT 299
||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 272 ATGGCAAGGCCCTAATTTCAAGTTGCATGCAGCATTTACGGCATATGAAGGTGGTGGTTT 331
Query 300 CATAGTTCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGACGGGATCTATTTCAC 359
|||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||
Sbjct 332 GATAGTTCATTATGGTAAAAAGAACTTTTGGGATGTTAGAGATGATGGGATCTATTTCAC 391
Query 360 CCATGGCCAAAAAATGCCCAAGTTAGAGTATAAGTGGAAATAATAATTAACCACTCaaa- 418
|||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||
Sbjct 392 CCATGGCCAAAAAATGCCCAAGTTAGAGTATACGTGGAAGTAATAATTAATCACTCAAAG 451
Query 419 --aaaaGATGGAATTTAACTCATCTTTTTGTTTTAA 452
||||||||||||||||||||||||||||||||||
Sbjct 452 GGAAAAGATGGAATTTAACTCATCTTTTTGTTTTAA 487
> AT5G38440.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr5:15390223-15390624 FORWARD LENGTH=402
Length=402
Score = 429 bits (232), Expect = 1e-119
Identities = 345/398 (87%), Gaps = 13/398 (3%)
Strand=Plus/Plus
Query 13 CTCTCGTGGTTTCTGCTCGTCATTGGATTGTCCGTAGGGTTGAGTAACGC--A---AA-G 66
|||||||| ||||||||||| |||||||||| | |||| ||||||||||| | ||
Sbjct 10 CTCTCGTGTTTTCTGCTCGTTATTGGATTGTGCATAGGATTGAGTAACGCAAATTTAATA 69
Query 67 TGGAATGAGAAAAACGCTGTCTTCTTTAAGAATTCTCTTGGTCGGAACAAAGTCTTGAAA 126
||||||||||||||| |||| ||||| |||| ||| |||||||| ||||| || ||| ||
Sbjct 70 TGGAATGAGAAAAACACTGTATTCTTCAAGAGTTCCCTTGGTCGAAACAATGTTTTG-AA 128
Query 127 G-TAAATTGCATATCAAATGACGACAATCTAGGCTTCCACTTTTTGCGTCCTGGAGAAAC 185
| | |||||| ||| | || ||||||||||| ||||| ||||||||||||||||||||
Sbjct 129 GATTCATTGCACATC--A-GAAGACAATCTAGGTTTCCATTTTTTGCGTCCTGGAGAAAC 185
Query 186 CTACGATTTTAGTTTCCACGATAGTCTTTTCAAATCAGAATTCTATTGTGACCTATGGCA 245
||| |||||||||||||| |||||| || | | |||||| || || ||||| |||||||
Sbjct 186 CTATGATTTTAGTTTCCATGATAGTATTGTGAGATCAGACTTTTACTGTGAATTATGGCA 245
Query 246 AGGCCCTGATTTCAAGTTGCATGCATCATTTATGGCATATGAAGGTGGTGGTTTCATAGT 305
||| ||| |||||||||| ||||||||||||||||||||| ||||||||||| |||||||
Sbjct 246 AGGGCCTAATTTCAAGTTTCATGCATCATTTATGGCATATCAAGGTGGTGGTCTCATAGT 305
Query 306 TCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGACGGGATCTATTTCACCCATGG 365
||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 306 TCATTATGGTAAAAAGAACTTTTGGGATGCTAGAGAAGATGGAATCTATTTCACTCATGG 365
Query 366 CCAAA-AAATGCCCAAGTTAGAGTATAAGTGGAAATAA 402
| ||| ||| ||||||||||||||||||||||||||||
Sbjct 366 C-AAAGAAACGCCCAAGTTAGAGTATAAGTGGAAATAA 402
> AT2G23142.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr2:9850176-9850619 FORWARD LENGTH=444
Length=444
Score = 122 bits (66), Expect = 2e-27
Identities = 111/133 (83%), Gaps = 2/133 (2%)
Strand=Plus/Plus
Query 266 ATGCATCATTTATGGCATATGAAGGTGGTGGTTTCATAGTTCATTATGGTAAAAAGAACT 325
||||| ||||| ||||||| ||||||| ||| | |||||||| || |||||||||||||
Sbjct 272 ATGCAAGATTTAGGGCATATAAAGGTGGAGGTCTGATAGTTCACTACGGTAAAAAGAACT 331
Query 326 TTTGGGATGCTAGAGAAGACGGGATCTATTTCACCCATGGCCAAA-AAATGCCCAAGTTA 384
||||||||||||||||||| || || || ||||| ||||| ||| ||| || || |||
Sbjct 332 TTTGGGATGCTAGAGAAGATGGTATTTACTTCACACATGGT-AAAGAAACACCTAAATTA 390
Query 385 GAGTATAAGTGGA 397
|||||||| ||||
Sbjct 391 GAGTATAAATGGA 403
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5