BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494136
Length=596
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 913 0.0
AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 902 0.0
AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (sm... 817 0.0
AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxyla... 734 0.0
> AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (small
chain) family protein | chr5:15384117-15385247 REVERSE
LENGTH=808
Length=808
Score = 913 bits (494), Expect = 0.0
Identities = 561/594 (94%), Gaps = 2/594 (0%)
Strand=Plus/Plus
Query 1 AAGAACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 60
||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 13 AAGAAGAAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCC 72
Query 61 CAGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCG 120
| ||||||||||||||||||||||||||||| || ||||||||||||||| ||||||| |
Sbjct 73 CGGCTCAAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGG 132
Query 121 TCACCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCT 180
||||||||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||
Sbjct 133 TCACCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCT 192
Query 181 GCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 240
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 193 GCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTG 252
Query 241 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTC 300
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 253 ACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTC 312
Query 301 CTTGTGTTGAATTCGAGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 360
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 313 CTTGTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCG 372
Query 361 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATT 420
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 373 GATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACT 432
Query 421 CTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATT 479
| |||||||||||||||||||| | |||||||||||||||||||||| |||||||||
Sbjct 433 CCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATT 491
Query 480 AGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 492 AGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAG 551
Query 540 CCCCCAAGCTTCACCGATGCTTAATTCCCTTTCTTGAATGTTCAGCGTTGACTA 593
|||||||||||||| ||||||||| ||| ||||| |||| |||| ||||||||
Sbjct 552 CCCCCAAGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCAATGTTGACTA 605
> AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (small
chain) family protein | chr5:15380945-15382035 REVERSE
LENGTH=861
Length=861
Score = 902 bits (488), Expect = 0.0
Identities = 555/588 (94%), Gaps = 2/588 (0%)
Strand=Plus/Plus
Query 4 AACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAG 63
||||||| | ||| ||||||||||||||| ||||||| ||||||||||||||||||| |
Sbjct 44 AACAAGAAGAAGTAATGGCTTCCTCTATGTTCTCCTCCACCGCTGTGGTTACCTCCCCGG 103
Query 64 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCGTCA 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 104 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTTCTTTCCCGGTCA 163
Query 124 CCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCA 183
|||||||||| ||||||||||||||||| ||| ||||||| || ||||||||||||||||
Sbjct 164 CCCGCAAGGCCAACAACGACATTACTTCCATCACAAGCAACGGAGGAAGAGTTAGCTGCA 223
Query 184 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 243
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 224 TGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 283
Query 244 TTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 303
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 284 TTAGTGACGTTGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 343
Query 304 GTGTTGAATTCGAGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGAT 363
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 344 GTGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGAT 403
Query 364 ACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATTCTG 423
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 404 ACTATGATGGACGATACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCG 463
Query 424 CTCAAGTGTTGAAGGAAG-TGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGG 482
|||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct 464 CTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCTGGCGCCTTCATTAGG 522
Query 483 ATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCC 542
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 523 ATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCC 582
Query 543 CCAAGCTTCACCGATGCTTAATTCCCTTTCTTGAATGTTCAGCGTTGA 590
|||||||||||||| ||||||| |||||||| |||| |||||||||||
Sbjct 583 CCAAGCTTCACCGAAGCTTAATCCCCTTTCTGGAATATTCAGCGTTGA 630
> AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (small
chain) family protein | chr5:15377173-15378416 REVERSE
LENGTH=999
Length=999
Score = 817 bits (442), Expect = 0.0
Identities = 541/586 (92%), Gaps = 17/586 (3%)
Strand=Plus/Plus
Query 4 AACAAGACGTAGTGATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAG 63
||||||| ||||| ||||||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 97 AACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGCCGCTGTGGTTACATCCCCGG 156
Query 64 CTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCCGTCA 123
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 157 CTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCATTCCCGGTCA 216
Query 124 CCCGCAAGGCTAACAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCA 183
|||||||| | ||||| ||||| ||||| ||| ||||||| || ||||||||||||||||
Sbjct 217 CCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCA 276
Query 184 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACC 336
Query 244 TTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 303
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 337 TTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTT 396
Query 304 GTGTTGAATTCGAGTTAGAGC-A-T-------------GGATTTGTGTACCGTGAGCACG 348
|||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct 397 GTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGGATTTGTGTACCGTGAGCACG 456
Query 349 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 457 GAAACACTCCCGGATACTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCG 516
Query 409 GATGCACCGATTCTGCTCAAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCT 467
|||||||||| || |||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 517 GATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCG 575
Query 468 AATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTC 527
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 576 GGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTC 635
Query 528 ATTGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCCCTTTCT 573
||||||||||||||||||||||||||||| |||||||| | |||||
Sbjct 636 ATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTCTTTTCT 681
> AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
small chain 1A | chr1:25048158-25049424 REVERSE LENGTH=1025
Length=1025
Score = 734 bits (397), Expect = 0.0
Identities = 508/561 (91%), Gaps = 9/561 (2%)
Strand=Plus/Plus
Query 18 ATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCAGCTCAAGCCACCATG 77
|||||||||||||||||||| || || || ||||| |||| || ||||| ||||| |||
Sbjct 176 ATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTCAGGCCACTATG 235
Query 78 GTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCTTTCCCCGTCACCCGCAAGGCTAA 136
|||||||| |||| ||| ||| ||||| |||||||| ||||| | |||||||||||||||
Sbjct 236 GTCGCTCCTTTCAACGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACCCGCAAGGCTAA 294
Query 137 CAACGACATTACTTCTATCTCAAGCAATGGCGGAAGAGTTAGCTGCATGAAGGTGTGGCC 196
||||||||||||||| ||| ||||||| ||||||||||||| ||||||| ||||||||||
Sbjct 295 CAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATGCAGGTGTGGCC 354
Query 197 ACCAATTGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTACTGACGT-CG 255
|| |||||||||||||||||||||||||| |||||||| ||||||||||| || | ||
Sbjct 355 TCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTTACCGA-TTCCG 413
Query 256 AATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCG 315
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 414 AATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTGTGTTGAATTCG 473
Query 316 AGTTAGAGCATGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGAC 375
|||| ||||| ||||||||||||||||||||||| ||| | ||||||||||| |||||||
Sbjct 474 AGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATACTATGATGGAC 533
Query 376 GGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGATTCTGCTCAAGTGTTGA 435
||||||||||||||||||||||||| |||||||| |||||||| || |||||||||||||
Sbjct 534 GGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGCTCAAGTGTTGA 593
Query 436 AGGAAGTGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCG 495
|||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 594 AGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGATCATCGGATTCG 653
Query 496 ACAACAACCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCG 555
|||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||
Sbjct 654 ACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACCAAGCTTCACCG 713
Query 556 ATGCTTAATT-CCCTTT-CTT 574
| |||||| |||||| |||
Sbjct 714 --G-TTAATTTCCCTTTGCTT 731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28683697937
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5