BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494137
Length=787
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (sm... 1147 0.0
AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 996 0.0
AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (sm... 933 0.0
AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxyla... 741 0.0
> AT5G38410.3 | Symbols: | Ribulose bisphosphate carboxylase (small
chain) family protein | chr5:15377173-15378416 REVERSE
LENGTH=999
Length=999
Score = 1147 bits (621), Expect = 0.0
Identities = 749/807 (93%), Gaps = 24/807 (3%)
Strand=Plus/Plus
Query 1 GGTTCTCACTATATAAAGATGACcaa-accaata-gacaaacaagtaagtaagtgaaaag 58
|||||||| ||||||||||||| ||| |||| || || |||||||| ||||||| ||| |
Sbjct 20 GGTTCTCATTATATAAAGATGA-CAACACCAGTAGGA-AAACAAGTCAGTAAGT-AAACG 76
Query 59 agcaaaagaagaagagaaacaacaagaagaagtAATGGCTTCCTCTATGCTCTCCTCGGC 118
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 77 AGCAAAAGAAGAAGAGAAACAACAAGAAGTAGTAATGGCTTCCTCTATGCTCTCCTCCGC 136
Query 119 CGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 178
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 137 CGCTGTGGTTACATCCCCGGCTCAGGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTC 196
Query 179 ATCCGCTGCTTTCCCGGTCACCCGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAA 238
||||||||| |||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 197 ATCCGCTGCATTCCCGGTCACCCGCAAGACCAACAAGGACATCACTTCCATCGCAAGCAA 256
Query 239 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGAC 298
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 257 CGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACCAATTGGAAAGAAGAAGTTTGAGAC 316
Query 299 TTTATCTTACCTCCCTGACCTTACTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 358
| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 317 TCTATCTTACCTCCCTGACCTTAGTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCT 376
Query 359 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAG--------CAC-------GG 403
|||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 377 CCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTTAGAGGTAATAAACACAAAACACGG 436
Query 404 ATTTGTGTACCGTGAACACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 463
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 437 ATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTACGATGGACGGTACTGGACAAT 496
Query 464 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGT-GCAAG 522
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 497 GTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGAAGTTG-AAG 555
Query 523 AATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCGACAACAACCGTC 582
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 556 AATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATCATCGGATTCGACAACACCCGTC 615
Query 583 AAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCAAGCTTCACCGATGCTTAATTCC 642
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 616 AAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAGCTTAATTTC 675
Query 643 CTTTCTAAAACATTCATATAAATTATCTCTACTCATTTCATT-CCTATTGTCTGTGTTGT 701
|||||||||||||| ||| |||||||||| ||||||||||| ||||||||||||||| |
Sbjct 676 TTTTCTAAAACATTCTTATGAATTATCTCTGCTCATTTCATTTCCTATTGTCTGTGTTCT 735
Query 702 TTT-CTCTTTATGAGACATTTTATATCGGATTGTCAAATGTCTGATTTATGAATATGTAT 760
||| |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 736 TTTTCTCTTTATGAGACAATTTCTATCGGATTGTCAAATGTCTGATTTATGAATATGTAA 795
Query 761 TTTATATATTCTTGCGTCTTGATTTTT 787
||||||||| | |||||||||||||||
Sbjct 796 TTTATATATCCGTGCGTCTTGATTTTT 822
> AT5G38420.1 | Symbols: | Ribulose bisphosphate carboxylase (small
chain) family protein | chr5:15380945-15382035 REVERSE
LENGTH=861
Length=861
Score = 996 bits (539), Expect = 0.0
Identities = 597/625 (96%), Gaps = 3/625 (0%)
Strand=Plus/Plus
Query 35 acaaacaagtaagtaagtgaaaagagcaaaagaagaagagaaacaacaagaagaagtAAT 94
||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||
Sbjct 1 ACAAACAAGTAAGTAAGAGAAAA-ACCAAAAGAAGAAGAGAAACAACAAGAAGAAGTAAT 59
Query 95 GGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGT 154
||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCTTCCTCTATGTTCTCCTCCACCGCTGTGGTTACCTCCCCGGCTCAAGCCACCATGGT 119
Query 155 CGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCGGTCACCCGCAAGGCCAACAA 214
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 120 CGCTCCATTCACCGGCTTGAAGTCATCCGCTTCTTTCCCGGTCACCCGCAAGGCCAACAA 179
Query 215 CGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATGAAGGTGTGGCCACC 274
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 180 CGACATTACTTCCATCACAAGCAACGGAGGAAGAGTTAGCTGCATGAAGGTGTGGCCACC 239
Query 275 AATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTTACTGACGTCGAATT 334
||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||
Sbjct 240 AATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTAGTGACGTTGAATT 299
Query 335 GGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTT 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTGTTGAATTCGAGTT 359
Query 395 AGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATACTACGATGGACGGTA 454
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||
Sbjct 360 GGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACTATGATGGACGATA 419
Query 455 CTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGA 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTCAAGTGTTGAAGGA 479
Query 515 AGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATCATCGGATTCGACA 573
||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 480 AGTTG-AAGAATGCAAGAAGGAGTACCCTGGCGCCTTCATTAGGATCATCGGATTCGACA 538
Query 574 ACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCAAGCTTCACCGATG 633
||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 539 ACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCAAGCTTCACCGAAG 598
Query 634 CTTAATTCCCTTTCTAAAACATTCA 658
|||||| |||||||| || |||||
Sbjct 599 CTTAATCCCCTTTCTGGAATATTCA 623
> AT5G38430.1 | Symbols: | Ribulose bisphosphate carboxylase (small
chain) family protein | chr5:15384117-15385247 REVERSE
LENGTH=808
Length=808
Score = 933 bits (505), Expect = 0.0
Identities = 554/578 (96%), Gaps = 2/578 (0%)
Strand=Plus/Plus
Query 82 aagaagaagtAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 19 AAGAAGAAGTAATGGCTTCCTCTATGCTCTCCTCTGCCGCTGTGGTTACCTCCCCGGCTC 78
Query 142 AAGCCACCATGGTCGCTCCATTCACCGGCTTGAAGTCATCCGCTGCTTTCCCGGTCACCC 201
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||
Sbjct 79 AAGCCACCATGGTCGCTCCATTCACTGGTTTGAAGTCATCCGCTTCTTTCCCGGTCACCC 138
Query 202 GCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATGA 261
||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 139 GCAAGGCCAACAACGACATTACTTCCATCACAAGCAATGGGGGAAGAGTTAGCTGCATGA 198
Query 262 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTTA 321
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 199 AGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTCTATCTTACCTCCCTGACCTTA 258
Query 322 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTGTG 381
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 259 CTGACGTCGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAATGGATTCCTTGTG 318
Query 382 TTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATACT 441
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 319 TTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGAAACACTCCCGGATACT 378
Query 442 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 ACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGCTC 438
Query 502 AAGTGTTGAAGGAAGT-GCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGATC 560
|||||||||||||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 439 AAGTGTTGAAGGAAGTTG-AAGAATGCAAGAAGGAGTACCCGGGCGCCTTCATTAGGATC 497
Query 561 ATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCCA 620
|||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 498 ATCGGATTCGACAACACCCGTCAAGTCCAATGCATCAGTTTCATTGCCTACAAGCCCCCA 557
Query 621 AGCTTCACCGATGCTTAATTCCCTTTCTAAAACATTCA 658
|||||||| ||||||||| ||| ||||| || |||||
Sbjct 558 AGCTTCACTGATGCTTAAATCCTTTTCTGGAATATTCA 595
> AT1G67090.1 | Symbols: RBCS1A | ribulose bisphosphate carboxylase
small chain 1A | chr1:25048158-25049424 REVERSE LENGTH=1025
Length=1025
Score = 741 bits (401), Expect = 0.0
Identities = 514/568 (90%), Gaps = 9/568 (2%)
Strand=Plus/Plus
Query 82 aagaagaagtAATGGCTTCCTCTATGCTCTCCTCGGCCGCTGTGGTTACCTCCCCGGCTC 141
|||||||| ||||||||||||||||||||| || || || ||||| |||| |||||||
Sbjct 166 AAGAAGAA-CAATGGCTTCCTCTATGCTCTCTTCCGCTACTATGGTTGCCTCTCCGGCTC 224
Query 142 AAGCCACCATGGTCGCTCCATTCACCGG-CTTGAAGTCATCCGCTGCTTTCCCGGTCACC 200
| ||||| ||||||||||| |||| ||| ||| ||||| |||||||| ||||| | ||||
Sbjct 225 AGGCCACTATGGTCGCTCCTTTCAACGGACTT-AAGTCCTCCGCTGCCTTCCCAGCCACC 283
Query 201 CGCAAGGCCAACAACGACATTACTTCCATCGCAAGCAACGGGGGAAGAGTTAGCTGCATG 260
|||||||| ||||||||||||||||||||| |||||||||| |||||||||| |||||||
Sbjct 284 CGCAAGGCTAACAACGACATTACTTCCATCACAAGCAACGGCGGAAGAGTTAACTGCATG 343
Query 261 AAGGTGTGGCCACCAATCGGAAAGAAGAAGTTTGAGACTTTATCTTACCTCCCTGACCTT 320
|||||||||| || || ||||||||||||||||||||| | |||||||| |||||||||
Sbjct 344 CAGGTGTGGCCTCCGATTGGAAAGAAGAAGTTTGAGACTCTCTCTTACCTTCCTGACCTT 403
Query 321 ACTGACGT-CGAATTGGCTAAGGAAGTTGACTACCTTCTCCGCAACAAGTGGATTCCTTG 379
|| || | |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 404 ACCGA-TTCCGAATTGGCTAAGGAAGTTGACTACCTTATCCGCAACAAGTGGATTCCTTG 462
Query 380 TGTTGAATTCGAGTTAGAGCACGGATTTGTGTACCGTGAACACGGAAACACTCCCGGATA 439
||||||||||||||| ||||||||||||||||||||||| ||||| ||| | ||||||||
Sbjct 463 TGTTGAATTCGAGTTGGAGCACGGATTTGTGTACCGTGAGCACGGTAACTCACCCGGATA 522
Query 440 CTACGATGGACGGTACTGGACAATGTGGAAGCTTCCATTGTTCGGATGCACCGACTCCGC 499
||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 523 CTATGATGGACGGTACTGGACAATGTGGAAGCTTCCCTTGTTCGGTTGCACCGACTCCGC 582
Query 500 TCAAGTGTTGAAGGAAGTGCAAGAATGCAAGAAGGAGTACCCTAATGCCTTCATTAGGAT 559
||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||
Sbjct 583 TCAAGTGTTGAAGGAAGTGGAAGAGTGCAAGAAGGAGTACCCCAATGCCTTCATTAGGAT 642
Query 560 CATCGGATTCGACAACAACCGTCAAGTCCAATGCATCAGTTTCATCGCCTACAAGCCCCC 619
||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 643 CATCGGATTCGACAACACCCGTCAAGTCCAGTGCATCAGTTTCATTGCCTACAAGCCACC 702
Query 620 AAGCTTCACCGATGCTTAATT-CCCTTT 646
||||||||||| | |||||| ||||||
Sbjct 703 AAGCTTCACCG--G-TTAATTTCCCTTT 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38278420014
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5