BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494148
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38320.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1157 0.0
> AT5G38320.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G67050.1);
Has 1807 Blast hits to 1807 proteins in 277 species: Archae
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385;
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
| chr5:15316015-15316834 REVERSE LENGTH=820
Length=820
Score = 1157 bits (626), Expect = 0.0
Identities = 754/815 (93%), Gaps = 11/815 (1%)
Strand=Plus/Plus
Query 1 CTCTAAAAATTTCTTGAGATA-ATTAATAACAATGCCGGAAAATGCTAGTGATAGTCCAA 59
|||||| | ||||| |||| | ||||||||||||||| ||||| |||| ||| |||||||
Sbjct 6 CTCTAATATTTTCTCGAGA-ACATTAATAACAATGCCCGAAAACGCTAATGAAAGTCCAA 64
Query 60 GAATCTCATTTTCTAACGATTTTTCCCACCACGATTCCATACCCATTGAGCAACGTCCAT 119
|||||||||||||||||||||||| ||||||||| |||||||| || ||||| ||| |||
Sbjct 65 GAATCTCATTTTCTAACGATTTTTGCCACCACGAGTCCATACCAATCGAGCAGCGTACAT 124
Query 120 TACAATCTCCGTTTGATATCTCCAACTTTTATTGGGGCTTTCCTTTGGAGTTTTCAATTG 179
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 125 CACAATCTCCGTATGATATCTCCAACTTCTATTGGGGCTTTCCTTTGGAGTTTTCAATAC 184
Query 180 CCCGCGATGCAATCTCCGGCGAGAGCTCGTGGTCCGCCGAAGAGTTCTTCAACGACGGCA 239
|||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 185 CCCGCGGTGCAATCTCCGGCGAGAGCTCCTGGTCCGCGGAAGAGTTCTTCAACGACGGCA 244
Query 240 AAATCCTCCCTATAGAAATGAAAAAGATCCCGGAGCCTATATATCGTTGTAAAAGC-GAG 298
|||||||||||||||||||||||||||||||||| || ||||||||| |||||| | ||
Sbjct 245 AAATCCTCCCTATAGAAATGAAAAAGATCCCGGAACCCATATATCGTAGTAAAA-CAGAT 303
Query 299 AAATATAAAACCGGTTTACCCAAACCGGAGATAAGTCCAATCGATG-TTGTTGAACCGGT 357
|||||||||||||||||||||| ||| ||||||| ||||||||| | || ||||||||||
Sbjct 304 AAATATAAAACCGGTTTACCCAGACCTGAGATAATTCCAATCGAAGATT-TTGAACCGGT 362
Query 358 TTTTGAAATAGAAGAAATTGGAGACCAAGAAGATGAGGTAAAGTTGCCATTACTTCCTTA 417
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 363 TCTTGAAATAGAAGAAATTGGAGACCAAGAATATGAGGTAAAGTTGCCATTACTTCCTTA 422
Query 418 TAACTCGACCGGTTCGAATTCTATGAAGAGTCAGGTTTCGtcttcttcttcttcttcttT 477
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 423 TAACTCGACCGGTTCGAATTCTATCAAGAGTCAGGTTTCGTCTTCTTCTTCTTCTTCTTT 482
Query 478 AAACGGTAGTGTTCCGAAACCGATATTGAAGAAGAACCATGGAGGTTACAACTACAAGGG 537
||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 483 TAACGGTAGTTTTCCGAAACCGATATTGAAGAACAACCATGGAGGTTATAACTACAAGGG 542
Query 538 AAATGGAGGTGTGATTAGGGTGAGCTCATTTCTTGATATGGTTCCTTCGGGGGATTTGTT 597
| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||
Sbjct 543 ACATGGAGGTGTGATTAGGGTGAGCTCATTTCTGGATATGGTACCTTCGGGGAATTTGTT 602
Query 598 TGGTTTAGGTTCGATAAATTTTGATGGTGGAAGAAAGAAGAACAAGATAAGATCAATGtt 657
||| |||||||||||||||||||||||||||||||| || ||||||||| ||||||||||
Sbjct 603 TGGGTTAGGTTCGATAAATTTTGATGGTGGAAGAAACAAAAACAAGATACGATCAATGTT 662
Query 658 tttttATTGGTAAGAATGACTTTTTGTGGAGTTCAGTGAATTAGTAGTGTTTTATTCTCT 717
||| ||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||
Sbjct 663 TTTCTATTGGTAAGAATGACTTTTTGTGGAGTTAAGTGAATTAGT-GT-TTT-ATTCTCT 719
Query 718 TCTCTGTTTCCTTAACTTTTGTATTTCAGAATAAGTATCATTTCTCTTAATTAATACATG 777
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 720 TCTATGTTTCCTTAACTTTTGTATTTCAGAATAAGTATCATTTCTCTTAATTAATCCATA 779
Query 778 AAGAATTGTTTATAAAAC-TCTAAATAAATCTTTT 811
|||||||||||||||| | |||||||||||| |||
Sbjct 780 AAGAATTGTTTATAAA-CGTCTAAATAAATCGTTT 813
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5