BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494150
Length=849
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38310.1 | Symbols: | unknown protein; Has 1807 Blast hits ... 1173 0.0
> AT5G38310.1 | Symbols: | unknown protein; Has 1807 Blast hits
to 1807 proteins in 277 species: Archae - 0; Bacteria - 0;
Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other
Eukaryotes - 339 (source: NCBI BLink). | chr5:15310405-15311321
REVERSE LENGTH=917
Length=917
Score = 1173 bits (635), Expect = 0.0
Identities = 688/714 (96%), Gaps = 2/714 (0%)
Strand=Plus/Plus
Query 1 ACCTCACAATTTGTTTATTAAGACATTCGTGaaaaaaaTACTATTTTGTAGCTTTTATTT 60
|||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| |||
Sbjct 3 ACCTCACAATTTGTTTATTAAGACATTCGTGAAAAACATACTATTTGGTAGCCTTT-TTT 61
Query 61 AATAATCTTCACGATGAGTCTTAAAAGCAGAGTAACCTCAACATCTTCTCACAATCTTCA 120
||| ||| |||| |||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 62 AATTATCGTCACAATGAGTCTTAAAAGCAGAGTTACCTCAACATCTTCACACAATCTTCA 121
Query 121 TCATTCGGAAGAAAGAGTCCCTCTCCGATCAGATTCAGACCAGTCATGTCTGAATTCAAG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 122 TCATTCGGAAGAAAGAGTCCCTCTCCGATCAGATTCAGACCAGTCATGTCTGAATTCAAG 181
Query 181 TCCAGAGTTCGACTTTTGTCTCCGTCAAAACTCAAAACAACGGTTTTCTCACGCCGACGA 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 182 TCCAGAGTTCGACTTTTGTCTCCGTCAGAACTCAAAACAACGGTTTTCTCACGCCGACGA 241
Query 241 GCTCTTCTCGGACTGGAGAAACCTCTCTCACACGGCCACCGACACTATTTCGAAGAAGAC 300
|||||||||| |||||| |||||| || ||||||||||||||||||||||||||||||||
Sbjct 242 GCTCTTCTCGTACTGGAAAAACCTTTCCCACACGGCCACCGACACTATTTCGAAGAAGAC 301
Query 301 CGAGATGACTTCTCCGAGAAGCAATCTTCAAACCCTAGCTGCGAAATCCGACACAAGAGA 360
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 CGAGATTACTTCTCCGAGAAGCAATCTTCAAACCCTAGCTGCGAAATCCGACACAAGAGA 361
Query 361 TTCTGACTCAGATGATCCAAGTTTTGGTTGTGGTTTTTGGCTTGTCAGAAGCAAATCTGT 420
|||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 362 TTCTGATTCAGATGATCCAAGTTTTGGGTGTGGTTTTTGGCTTGTAAGAAGCAAATCTGT 421
Query 421 TGGGTACTCAATGAGAAACAAGAAAACAAATTCTTCTTCGGAATATCAACGGAGCAATAG 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 TGGGTACTCAATGAGAAACAAGAAAACAAATTCTTCTTCGGAATATCAACGGAGCAATAG 481
Query 481 TGATCCACATAAAAAGAAGAAGAAGAAGAGTTTGCAGAAGATGAATTCTACAGAGATTAG 540
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 482 TGATCCACATAAAAAGAAGAAGAAGAAGAGTTTGCAGAAAATGAATTCTACAGAGATTAG 541
Query 541 AGCTCCAAGATCAATGAATAGTCCGGCGTTGAATGTCCCATTGGCTGATATATTTTGCCT 600
|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 542 AGCTTCAAGATCCATGAATAGTCCGGCGTTGAATGTCCCATTGGCTGATATATTTTGCTT 601
Query 601 AGGCCCTGTTTTTTCCGGTAGCCGTGATCGAAGAAAATGAAAGTGTGCTCTTATCTTATA 660
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 602 AGGCCCTGTTTTTTCCGGTAGCCGTGATCGTAGAAAATGAA-GTGTGCTCTTATCTTATA 660
Query 661 ACCATGGTCCTGACCTAATTTCTGGAACATGTGAAGAGTTAGGTGTATGATTGG 714
|||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 ACCATGATCCTGACCTAGTTTCTGGAACATGTGAAGAGTTAGGTGTATGATTGG 714
Score = 169 bits (91), Expect = 5e-41
Identities = 125/139 (90%), Gaps = 11/139 (8%)
Strand=Plus/Plus
Query 715 ACTAAGAATCTAATTCGAGtttttttgtttttCATGTTATTGATTTGTTTGTACATTGAT 774
||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 786 ACTAAGAATCTAATTCGAG------T-TTTTTCATGTTATTGATTTGTTTGTACATTGAT 838
Query 775 GTAACATATACGTTGGTTGTA---A-TATAGAAATGTAATTTTCACATCTCATAGGAAGA 830
||||||||||||||||||||| | |||||||||||||||||||||| |||||| ||||
Sbjct 839 GTAACATATACGTTGGTTGTACGTAATATAGAAATGTAATTTTCACATTTCATAGAAAGA 898
Query 831 AATATACTGTACTATTTTG 849
|||| ||||||||||||||
Sbjct 899 AATAGACTGTACTATTTTG 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41392937128
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5