BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494151
Length=1090
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1447 0.0
AT1G67035.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 87.9 2e-16
> AT5G38300.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 12
plant structures; EXPRESSED DURING: 6 growth stages; BEST
Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G67035.2);
Has 1807 Blast hits to 1807 proteins in 277 species:
Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source:
NCBI BLink). | chr5:15305932-15307008 FORWARD LENGTH=1077
Length=1077
Score = 1447 bits (783), Expect = 0.0
Identities = 1006/1106 (91%), Gaps = 45/1106 (4%)
Strand=Plus/Plus
Query 1 ATTAAATAAAGTCTTTTTGCAAACAACACAATCTAGTTCACaaaaaaaaaaaaaaGTTCT 60
|||||||||||||||||||||||||||| ||||| ||| || |||| || |||
Sbjct 1 ATTAAATAAAGTCTTTTTGCAAACAACAAAATCTGGTT-------AACCAAAATAGCTCT 53
Query 61 CTCTTTTACTGAAGAAGTGATCGAGAGATTTTATCCAACAATGGCGGATATAATCTCAAA 120
|||||||||||||||||||||| || ||||||| |||| ||||||||||||||||||||
Sbjct 54 CTCTTTTACTGAAGAAGTGATC--GA-ATTTTATTCAACGATGGCGGATATAATCTCAAA 110
Query 121 TCCGGCCATGGAACAACTGTTCTTCTCTGTTGATCCAATGTCTCTTATACTCTCTCAAAA 180
|||| ||||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 111 TCCGACCATGGAACAACTCTTCTTCTCTGTAGATCCGATGTCTCTTATACTCTCTCAAAA 170
Query 181 CTCAGACACACATCAGCTTAAACTCTTGTTAGATGGTTTCTCCGGATTCGAAAGAGGTCC 240
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 171 CTCCGACACACATCAACTTAAACTCTTGTTAGACGGTTTCTCCGGATTCGAAAGAGGTCC 230
Query 241 AAGATACGATGAATACTCGAGATTACGTGAATCAAAGCTTCGTATGAAACGTGATTTTCA 300
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 231 AAGATACGATGAATACTCGAGATTACGTGAATCGAAGCTTCGCATGAAACGTGATTTTCA 290
Query 301 GAAATTCCTCGAGGAAGAAGACGAAGAAGAAGAGCCAAGGATCAAAAAACAAGTGAGGTT 360
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||| || ||
Sbjct 291 GAAATTCCTCGAGGAAGAAGACGAAGTAGAAGAGCCGAGGATCAAAAAACAAGTCAGATT 350
Query 361 CGAGGGTAATTCTGTAATTTCACTAGAA---GATAAGTTCTCGCCGGAGAAGAAGAAACA 417
||||||||||||||||| ||| | |||| |||||||| || |||||||||||||||||
Sbjct 351 CGAGGGTAATTCTGTAAATTCGCAAGAAGGTGATAAGTTTTCTCCGGAGAAGAAGAAACA 410
Query 418 GAGTCGATTCGAGGGTAATTCAGTAATTTCACAAGAAGAAGATAAGTTTACGCCGGAGAA 477
|||||| |||||||||| |||||||||||||| ||||||||| |||| ||||||||||
Sbjct 411 GAGTCGGTTCGAGGGTATTTCAGTAATTTCAC---AAGAAGATAGGTTTTCGCCGGAGAA 467
Query 478 ---GAAGAAACAGAGTCGATTTGGGTTTTCGCCGATGAGAAAAGCTGTTCCGTCTTCGTT 534
||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct 468 GGTGAAGAAACAGAGTCGATTTGGGTTTTCTCCGCTGAAAAAAGCTGTTCCGTCTTCGTT 527
Query 535 GGCTCAATCTGTTCCTGATTTCTCCGCTGTGATACGTAAAGAGAATCGTCGTCCGGTTAA 594
||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 528 GGCACAATCAGTTCCTGATTTCTCTGCTGTGATACGTAAAGAGAATCGTCGTCCGGTTAA 587
Query 595 CT-TCAACACTACTACTCCGCCTCCGCCGACTTCGAAGAGTAAAAACGGCGGCGTTTTGT 653
| ||||||||| ||||||||| || |||||||||||||||| ||||||||||||||||
Sbjct 588 -TATCAACACTATTACTCCGCCACCACCGACTTCGAAGAGTAGAAACGGCGGCGTTTTGA 646
Query 654 CGGGATCGGCTTCGAA-AGGGAGCAAGTCGGCGAGTGCAGGGGAGAAGAAGAGTAAAGGG 712
||||||||||||| || ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 647 CGGGATCGGCTTC-AAGAGGGAGCAAGTCGGCGAGTGCTGGAGAGAAGAAGAGTAAAGGG 705
Query 713 ATGATGATGGGAATGGGAATGGCGCGTAAGAGTTACGCTAATGTTGAGGATCTTAAGAAG 772
|||||||| | ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 706 ATGATGAT--G-ATGGGAATGGCACGTAAGAGTTACGCTAATGTTGAAGATCTTAAGAAG 762
Query 773 ATTTCAATGGCGGCTGCTTCTGCTATTAATGGTGGTGGC---GGCGGAGGAGGAGGGAGA 829
|||||||||||||||||||||||||||||||| |||||| || |||||||||||||||
Sbjct 763 ATTTCAATGGCGGCTGCTTCTGCTATTAATGGCGGTGGCGGTGGAGGAGGAGGAGGGAGA 822
Query 830 AAAGTTGGTGAAGGTGGTGGTGGTCGTCGGACTATTCTTGGTTACAGACAAATTTACTGA 889
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AAAGTTGGTGACTGTGGTGGTGGTCGTCGGACTATTCTTGGTTACAGACAAATTTACTGA 882
Query 890 TTTCGTTC--CAAAAGCTTTGATTTTTACACGATTTTATTAGTTCtttttgtgggttttt 947
||||||| |||||||||||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 883 TTTCGTTTATCAAAAGCTTTGATTTTTACACGATTTTATTAGTT-TTTT-GTGGGATTTT 940
Query 948 gattgatgagaagcaattactttggatttgattgatgattttgggtttttgtggcttttt 1007
|||||||||||| ||||| ||| ||||||||||| |||||| ||||||||||||||||||
Sbjct 941 GATTGATGAGAAACAATT-CTT-GGATTTGATTGTTGATTT-GGGTTTTTGTGGCTTTTT 997
Query 1008 tttttttGGTGTGTTGGTGATTT-GATTTGTTTGTaaaaaaaTAAAGCATAAATTCTTGA 1066
|| |||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 998 TT-----GGTGTGTTGGTGATTTTGATTTGTTTGTAAAAAA-TAAAGCATAAATTCTTGA 1051
Query 1067 TATTG-A-AACTCGTGTGATTTTTTC 1090
|||| | ||||||||||||| ||||
Sbjct 1052 TATTATATAACTCGTGTGATTCTTTC 1077
> AT1G67035.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G38300.1).
| chr1:25018077-25019057 FORWARD LENGTH=981
Length=981
Score = 87.9 bits (47), Expect = 2e-16
Identities = 55/59 (93%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 527 TCTTCGTTGGCTCAATCTGTTCCTGATTTCTCCGCTGTGATACGTAAAGAGAATCGTCG 585
|||||||||||||||||||||||||||||||| || |||| |||||||||||||||||
Sbjct 409 TCTTCGTTGGCTCAATCTGTTCCTGATTTCTCTTCTATGATTCGTAAAGAGAATCGTCG 467
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53413379880
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5