BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494154
Length=2268
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38280.1 | Symbols: PR5K | PR5-like receptor kinase | chr5:1... 2056 0.0
AT4G18250.1 | Symbols: | receptor serine/threonine kinase, put... 761 0.0
> AT5G38280.1 | Symbols: PR5K | PR5-like receptor kinase | chr5:15293121-15297323
REVERSE LENGTH=2316
Length=2316
Score = 2056 bits (1113), Expect = 0.0
Identities = 1328/1432 (93%), Gaps = 13/1432 (1%)
Strand=Plus/Plus
Query 842 CAACGACATAAGCTCAGCGTCTCAACCATCCAAGGAAACTAATGGAGGAACAAAACAAAA 901
|||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 864 CAACGACATAAGTTCAATGTCTCAACCATCCAAGGAAACTAATGGAGGAACGAAACAAAA 923
Query 902 ATCATCATGGAAGTTAAAACTCATACTTGGAGTCTCAGCAGCTTTAACCATGATGATCAT 961
|||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||| |
Sbjct 924 GTCATCATGGAAGTTAAAACTCATAGTTGGAGTCTCAGCAGCTTTGACCCTGATGATCTT 983
Query 962 AATTGTGGTCTTAATAATTGTGAGAACAAAGAATGTGAGAAATAGTGATTGGAATGATCA 1021
|||||||||| ||||||| ||||||||||||||| ||||||||||||| |||||||||||
Sbjct 984 AATTGTGGTCGTAATAATAGTGAGAACAAAGAATATGAGAAATAGTGAGTGGAATGATCA 1043
Query 1022 GAACGTTGAAGCAGTTGCAATGTTGAAACGATATAGTTATACAAGAGTCAAGAAGATGAC 1081
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1044 GAACGTTGAAGCAGTTGCAATGTTGAAACGATACAGTTATACAAGAGTCAAGAAGATGAC 1103
Query 1082 AAAATCATTTGTGCATGTTCTCGGAAAAGGAGGATTTGGAACTGTCTACAAAGGAAAGTT 1141
||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1104 AAACTCATTTGCGCATGTTCTCGGTAAAGGAGGATTTGGAACTGTCTACAAAGGAAAGTT 1163
Query 1142 ACCCGATAGCGGTCGGGATGTTGCAGTGAAGATCTTGAAGGAGACAGAGGGGAATGGGGA 1201
| ||||||||||||||||||| ||||| ||||||||||||| | ||||||| ||||| ||
Sbjct 1164 AGCCGATAGCGGTCGGGATGTCGCAGTTAAGATCTTGAAGGTGTCAGAGGGTAATGGAGA 1223
Query 1202 AGAGTTTATCAATGAAGTAGCTAGCATGAGTAGAACATCTCATGTCAATATCGTTTCTTT 1261
|||||| || ||||||||||| ||||||||||||||||||||||||||||| |||||| |
Sbjct 1224 AGAGTTCATTAATGAAGTAGCAAGCATGAGTAGAACATCTCATGTCAATATTGTTTCTCT 1283
Query 1262 GCTTGGATTCTGTTATGAAAGGAACAAGAGAGCTATAGTCTATGAGTTCATGCCTAATGG 1321
|||||||||||||||||||| |||||||||||||||| |||| ||||||||||| |||||
Sbjct 1284 GCTTGGATTCTGTTATGAAAAGAACAAGAGAGCTATAATCTACGAGTTCATGCCGAATGG 1343
Query 1322 ATCCCTCGACAAGTATATTTCTGCGAATATGTCAACCAAGTTGGAATGGGAAAGATTATA 1381
||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1344 GTCCCTCGACAAGTATATTTCTGCGAATATGTCAACAAAGATGGAATGGGAAAGATTATA 1403
Query 1382 TGACATTGCGCTAGGTATCTCTGGCGGCCTAGAGTATTTACACAATCGCTGTGTCACAAG 1441
||| ||||| ||||||||||| ||||||||||||||||||||||||| |||||||| ||
Sbjct 1404 CGACGTTGCGGTAGGTATCTCTCGCGGCCTAGAGTATTTACACAATCGGTGTGTCACGAG 1463
Query 1442 GATTGTACATTTCGACATAAAGCCGCAGAACATACTGATGGACGGAAATCTTTGCCCTAA 1501
|||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1464 GATTGTCCATTTCGACATAAAGCCGCAGAACATACTGATGGACGAAAATCTTTGTCCTAA 1523
Query 1502 GATTTCAGACTTTGGTCTTGCTAAACTCTGCAAAAATAAGGAGAGCATCATATCAATGCT 1561
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1524 GATTTCAGATTTTGGTCTTGCTAAACTCTGCAAAAATAAGGAGAGCATCATATCAATGCT 1583
Query 1562 ACACATGAGAGGAACCTTTGGATACATTGCTCCTGAAATGTTTTCCAAGAATTTTGGAGC 1621
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1584 ACACATGAGAGGGACCTTTGGATACATTGCCCCTGAAATGTTTTCCAAGAATTTTGGAGC 1643
Query 1622 AGTTTCGCATAAGTCAGATGTTTATAGTTATGGAATGGTACTTCTTGAGATGATTGGAGC 1681
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1644 AGTTTCGCATAAGTCAGATGTTTATAGTTATGGGATGGTAGTTCTTGAGATGATTGGAGC 1703
Query 1682 AAAGAATATAGAAAAGGTTGAATATTCTGGATCCAACAATAGTTCAATGTACTTTCCAGA 1741
||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct 1704 AAAGAATATAGAAAAGGTTGAATATTCTGGATCTAACAATGGTTCAATGTACTTTCCAGA 1763
Query 1742 TTGGGTCTATAAAGATTTTGAGAGGGGACAAATCACAAGGATTTTTGGAGATAGTATAAC 1801
|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1764 ATGGGTCTATAAAGATTTTGAGAAGGGAGAAATCACAAGGATTTTTGGAGATAGTATAAC 1823
Query 1802 TGATGAAGAAGAGAAAATTGCAAAGAAATTGGTATTGGTTGCTCTATGGTGTATTCAGAC 1861
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1824 TGATGAAGAAGAGAAAATTGCAAAGAAATTGGTATTGGTTGCTCTATGGTGTATACAGAT 1883
Query 1862 GAATCCATCTGACCGTCCACCAATGATCAAAGTCATTGAAATGTTAGAGGGAAATCTAGA 1921
||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1884 GAATCCATCAGACCGTCCACCAATGATCAAAGTCATTGAGATGTTAGAGGGGAATCTAGA 1943
Query 1922 GGCTCTCCAAGTTCCACCTAATCCTCTCTTGTTTTCACCCGCGGAAACGGTTCCAGAAAT 1981
|||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct 1944 GGCTCTTCAAGTACCACCTAATCCTCTCTTGTTTTCACCCGAGGAAACGGTTCCAGACAC 2003
Query 1982 TCTTGAAGATAGTGATGAGACTTCAACCTTCTTTAATCCAAGTTCCTTTGGAA-GTGATA 2040
|||||||||||||||||| |||||||||||||||||||||||| | ||| ||| | | ||
Sbjct 2004 TCTTGAAGATAGTGATGACACTTCAACCTTCTTTAATCCAAGT-CATTTTGAAAGAGGTA 2062
Query 2041 CTCTCTTA-ACTAGTGAAGATGCTTTACAACATGGGTCAAGGTCCTCCTAAACTAAAGTC 2099
|||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2063 CTCTCTTAGA-TAGTGAAGATGTTTTACAACATGGGTCAAGGTCCTCCTAAACTAAAGTC 2121
Query 2100 AAA-GAATAGCTCAAGATCTTGACAAGTTTTAA-GAG-TTGTAG-TATCTTCTCGATTAG 2155
|| | | ||| | |||| | || || | | || || ||| ||| |||||||||||
Sbjct 2122 AACCGGAGAGCGGATC-TCTTTA-AACTTGTCATGATCTT-TAGCTAT-TTCTCGATTAG 2177
Query 2156 TTTTTAAAAACTTCTGACTTAATAGTGTTGATTCTATGCTTATTAGATGATGTTTATTGA 2215
||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||
Sbjct 2178 TTTTTAATAACTTCTGACTTAATAGTGT-GTTTCTATGCTTATTAGATGATGTTTACTGA 2236
Query 2216 CGCAGACACTCACTATTGTTGGTTAATGAAGAATATTTTATGTTCTTTTTCT 2267
||||| |||||| ||||||||||||||||||| |||||| |||| |||||||
Sbjct 2237 CGCAGGCACTCAATATTGTTGGTTAATGAAGACTATTTTCTGTTGTTTTTCT 2288
Score = 516 bits (279), Expect = 4e-145
Identities = 394/447 (88%), Gaps = 18/447 (4%)
Strand=Plus/Plus
Query 1 ACAAAGGGTAGTCATATATC-T---TCTTCTTCGAGCCAATGGTTACAA-GGTTC-C--- 51
||||||||||||| |||||| | |||||| | ||||||||||| || ||||| |
Sbjct 76 ACAAAGGGTAGTCTTATATCTTCAGTCTTCTACAAGCCAATGGTT-GAAGGGTTCTCATT 134
Query 52 --CATTGATGTTCCTCCTTGTTTCCCATTTATTCGTCTTAGGAGTAATGTCAAGAAACTT 109
|||||||||||||||||||||| ||||| || |||| |||||||||||| ||||||||
Sbjct 135 GTCATTGATGTTCCTCCTTGTTTCACATTTCTTTGTCTCAGGAGTAATGTCGAGAAACTT 194
Query 110 TACTATAGAGAACAAATGCGCTTACACTGTCTGGCCAGGATTCCTAACCATGACTACTGC 169
|||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 195 TACTATAGAGAACAAATGCGATTACACTGTCTGGCCGGGATTCCTAACCATGACTACTGC 254
Query 170 GGTTTCGCTACCCACCACCGGCTTCTCCCTTAAGAAAGGGGAGACGCGTGTCATCAATGT 229
||||||||| ||||||| |||||||||||| |||||||||||| | ||||||||||||||
Sbjct 255 GGTTTCGCTCCCCACCAACGGCTTCTCCCTCAAGAAAGGGGAGTCACGTGTCATCAATGT 314
Query 230 GCCATCGTCATGGTCAGGTCGTTTGTGGGGTAGATCGCTT-TGCTCAACCAGCTCAACAG 288
|||| |||||||||||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 315 GCCACCGTCATGGTCAGGTCGTTTGTGGGGTAGATCG-TTCTGCTCCACCAGCTCAACAG 373
Query 289 GAAATTTCTCATGTGCCACAGGAGACTGCGGCTCTGGAAAAATTGAGTGCTCTGGAGGC- 347
| ||||||||||||||||| |||||||||||||| |||||||| |||||||| | | |
Sbjct 374 GGAATTTCTCATGTGCCACGGGAGACTGCGGCTCCGGAAAAATCGAGTGCTCCG-ATTCC 432
Query 348 GCAGCA-GCGCCTCCAACAACGCTAATCGATTTTACCCTCGACGGTTCCAAAGGTCAAGA 406
| |||| | |||||| || |||||||| ||||||||||| |||| | || | ||||||||
Sbjct 433 GGAGCAAG-GCCTCCTACGACGCTAATTGATTTTACCCTTGACGCTACCGACGGTCAAGA 491
Query 407 CTTCTACGATGTAAGCGTTGTGGATGG 433
|||||||||||||||||| ||||||||
Sbjct 492 CTTCTACGATGTAAGCGTCGTGGATGG 518
Score = 433 bits (234), Expect = 4e-120
Identities = 286/311 (92%), Gaps = 3/311 (1%)
Strand=Plus/Plus
Query 438 AGGGAGAGGCCGGACATGCAGCAGCGTTGGTTGCGTGGTCAAC-TGAACAAGACGTGTCC 496
|||||| ||||||||||| |||| ||||||||| ||||| ||| |||||||||| |||||
Sbjct 555 AGGGAGTGGCCGGACATGTAGCAACGTTGGTTGTGTGGTTAACTTGAACAAGACTTGTCC 614
Query 497 GTCGGAGCTTAAGGTGATGGGAAGCTCTGACAAGGAACATCCCATCGCTTGCATGAACGC 556
|||||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 615 GTCGGAGCTTAAAGTGATGGGAAGCTCTAACAAGGAACATCCCATTGCTTGCATGAACGC 674
Query 557 TTGTGAAAAATTCCGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGCACACCTGAAAA 616
|||| | |||||| |||||||||||||||||||||||||||||||||| | ||||| |||
Sbjct 675 TTGTCAGAAATTCGGGTTGCCGGAGTTCTGCTGCTACGGTGAGTACGGTAAACCTGCAAA 734
Query 617 ATGCCAACCGACGCTTTACTCGAAGAATTTTTCAAGAACGATTGTCCACTCGCTTATAGC 676
||| ||||||||||||||||| | ||| |||||||||||| ||||||||||||||||||
Sbjct 735 ATGTCAACCGACGCTTTACTCTACGAA--TTTCAAGAACGAGTGTCCACTCGCTTATAGC 792
Query 677 TATGCTTATGACAATGAAAACAGCACCGTCAGATGCTCAAACTCACCTGACTATGTCATC 736
|||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||
Sbjct 793 TATGCTTATGACAATGAAAACAACACCTTCAGATGCTCAAACTCACCTAACTATGTCATC 852
Query 737 ACCTTTTGCCC 747
|||||||||||
Sbjct 853 ACCTTTTGCCC 863
> AT4G18250.1 | Symbols: | receptor serine/threonine kinase, putative
| chr4:10087343-10091963 REVERSE LENGTH=2562
Length=2562
Score = 761 bits (412), Expect = 0.0
Identities = 920/1157 (80%), Gaps = 68/1157 (6%)
Strand=Plus/Plus
Query 892 CAAAACAAAAATCATC-ATGGAAGTTAAAACTC-ATACTTGGAGTCTCAGCAGCTTTAAC 949
||||||| || || || | |||||||||||| | |||||||||| ||||||||||||||
Sbjct 1358 CAAAACATAATTC-TCTACGGAAGTTAAAAC-CGATACTTGGAGGCTCAGCAGCTTTAAT 1415
Query 950 CATGATGATCA-TAATTGTGGT-CTT--AATAATTGTGAGAACAAAGAATGTG---AGAA 1002
|| |||||| | ||||| || || || | |||||| | | | ||| | ||||
Sbjct 1416 TGTGTTGATCAGT-ATTGTTGTGATTGCGCTAGTAGTGAGAGCGAGGCATGCGAAAAGAA 1474
Query 1003 ATAGTG-ATTGGAATGATC-AGAACGTTGAAGCAGTTGCAATGTTGAAACGATATAG-TT 1059
| |||| ||| ||| || | ||||| ||||||| |||| ||||||||||| ||||| ||
Sbjct 1475 AGAGTGAATT-GAACGA-CGAGAACATTGAAGCGGTTGTGATGTTGAAACGTTATAGCTT 1532
Query 1060 AT-ACAAGAGTCAAGAAGATGACAAAATCATTTG-TGCATGTTCTCGGAAAAGGAGGATT 1117
| | || |||||||||||||||||| || |||| | |||||| | || |||||||||||
Sbjct 1533 -TGA-AAAAGTCAAGAAGATGACAAACTCGTTTGAT-CATGTTATTGGGAAAGGAGGATT 1589
Query 1118 TGGAACTGTCTACAAAGGAAAGTTACCCGAT---AGCGGTCGGGATGTTGCAGTGAAGAT 1174
|||||||||||| |||||||| |||||||| ||||| || ||| |||| |||||||
Sbjct 1590 TGGAACTGTCTATAAAGGAAAACTACCCGATGCCAGCGGCCGAGATATTGCTCTGAAGAT 1649
Query 1175 CTTGAAGGAGACAGAGGGGAATGGGGAAGAGTTTATCAATGAAGTAGCTAGCATGAGTAG 1234
|||||| ||| || | |||||||| |||||||| ||||||||| ||| ||||||||||||
Sbjct 1650 CTTGAAAGAGTCAAAAGGGAATGGAGAAGAGTTCATCAATGAACTAGTTAGCATGAGTAG 1709
Query 1235 AACATCTCATGTCAATATCGTTTCT-TTGCTTGGATTCTGTTATGAAAGGAACAAGAGAG 1293
| | |||||||| || ||||||||| || ||||||| || |||||| ||| | ||||||
Sbjct 1710 AGCTTCTCATGTTAACATCGTTTCTCTT-TTTGGATTTTGCTATGAAGGGAGCCAGAGAG 1768
Query 1294 CTA-TAGTCTATGAGTTCATGCCTAATGGATCCCTCGACAAGTATATTTCTGCGAATATG 1352
||| || |||| ||||||||||| ||||||||||| ||||||| ||| || | |||||||
Sbjct 1769 CTATTA-TCTACGAGTTCATGCCGAATGGATCCCTTGACAAGTTTATATCCGAGAATATG 1827
Query 1353 TCAACCAAGTTGGAATGGGAAAGATTATATGACATTGCGCTAGGTATCT-CTGGCGGCCT 1411
||||| ||| | || ||| ||| |||||| |||| ||| ||||| | | || | || ||
Sbjct 1828 TCAACAAAGATAGAGTGGAAAACATTATACAACATCGCGGTAGGTGT-TGCTCGTGGGCT 1886
Query 1412 AGAGTATTTACACAATCGCTGTG--TCACAAGGATTGTACATTTCGACATAAAGCCGCAG 1469
||||| || |||||| | |||| || ||| |||||| |||||||| |||||||| |||
Sbjct 1887 CGAGTACTTGCACAATAGTTGTGTATC-CAA-GATTGTGCATTTCGATATAAAGCCACAG 1944
Query 1470 AACATACTGATGGACGGAA-ATCTT-TGCCCTAAGATTTCAGACTTT-GGTCTTGCTAAA 1526
|| ||||| || ||| ||| | ||| ||||| |||||||| || ||| |||||||||||
Sbjct 1945 AATATACTCATAGAC-GAAGA-CTTATGCCCGAAGATTTCGGA-TTTCGGTCTTGCTAAG 2001
Query 1527 CTCTGCAAAAATAAGGAGAGCATCATATCAATGCTACACATGAGAGGAACCTTTGGATAC 1586
|| |||||||| || || || |||||||||||| || || |||||| || | || |||
Sbjct 2002 CTATGCAAAAAGAAAGAAAGTATCATATCAATGTTAGACGCGAGAGGGACAGTAGGGTAC 2061
Query 1587 ATTGCTCCTGAAATGTTTTCCAAGAATTTTGGAGCAGTTTCGCATAAGTCAGATGTTTAT 1646
|||||||||||||||||||||||||| | ||||| ||||||||||||||||||||| |||
Sbjct 2062 ATTGCTCCTGAAATGTTTTCCAAGAACTATGGAGGAGTTTCGCATAAGTCAGATGTGTAT 2121
Query 1647 AGTTATGGAATGGTACTTCTTGAGATGATTGGAGCAAAGAATATAGAA-AAGGTTGAATA 1705
|||||||||||||| |||||||||||||||| |||| ||| | |||| ||| ||||| |
Sbjct 2122 AGTTATGGAATGGTGGTTCTTGAGATGATTGGGGCAACGAAAAGAGAAGAAG-TTGAA-A 2179
Query 1706 -TTCTG-GATCCAACAATAGTTCAATGTACTTTCCAGATTGGGTCTATAAAGATTTTGAG 1763
||||| || || | || ||||||||||||||||| |||||||||||| | ||| |||||
Sbjct 2180 CTTCTGCGA-CCGATAAAAGTTCAATGTACTTTCCTGATTGGGTCTATGAGGATCTTGAG 2238
Query 1764 AGGGGACAAATCACAAGGATTTTTGGA-GAT-AGTATAA-CT--GATGAAGAAGA-GA-A 1816
||| | ||| || || | | || || ||| | ||||| | || |||||||| || |
Sbjct 2239 AGGAAAGAAACCATGAG-ACTATTAGAAGATCA-TATAATCGAAGAAGAAGAAGAAGAGA 2296
Query 1817 A-ATTGCAAAGA-AATTGGTATTGGTTGCTCTATGGTGTATTCAGACGAATCCATCTGAC 1874
| || | |||| ||| | ||| || | | | |||||||| || || |||||||||||
Sbjct 2297 AGATAGTGAAGAGAAT-GACATTAGTGGGTTTGTGGTGTATACAAACCAATCCATCTGAT 2355
Query 1875 CGTCCACCAATGATCAAAGTCATTGAAATGTTAGAGGGAAATC-T--AGAGGCTCTCCAA 1931
||||||||||||| ||||| |||||||||||||||| | || | ||| ||||| ||
Sbjct 2356 CGTCCACCAATGAGAAAAGTTGTTGAAATGTTAGAGGGCAGTCGTCTAGAAGCTCTACAG 2415
Query 1932 GTTCCACCTAATCCTCTCTTGT-TTTCACCCGCGGAAACGG-TTCCAGAAA-TTCTTGAA 1988
||||||||||| ||||||||| ||| || || | ||||| || |||| |||| |||
Sbjct 2416 GTTCCACCTAAGCCTCTCTTGAATTT-ACACGTAGTAACGGATTGG-GAAACTTCT-GAA 2472
Query 1989 GATAGTGATGAGACTTC 2005
|||||| | |||||||
Sbjct 2473 GATAGTCAACAGACTTC 2489
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112549621890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5