BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494155
Length=1236
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-... 1393 0.0
AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1... 139 6e-32
> AT5G38270.1 | Symbols: | F-box family protein | chr5:15289032-15290252
FORWARD LENGTH=1221
Length=1221
Score = 1393 bits (754), Expect = 0.0
Identities = 1095/1253 (87%), Gaps = 49/1253 (4%)
Strand=Plus/Plus
Query 1 ATGGATACGCCAAACGATTTGATGAAAGAAGAGA-AGAGACGAAAAGTGTCTGAAAATCA 59
||| ||||||||||||||| ||||| |||||||| | || | |||||||| || ||||||
Sbjct 1 ATGTATACGCCAAACGATTCGATGAGAGAAGAGATA-AGCCTAAAAGTGTTTGTAAATCA 59
Query 60 CGATTGGTCCAAACTTTATCCTGATCTTTTACGGTCGATACTCGAAAGCTTGAACTCTAT 119
||||||||||||||||| ||| ||| | ||||||||||| ||||||||||||| |||||
Sbjct 60 CGATTGGTCCAAACTTTGTCCCGATATCTTACGGTCGATCCTCGAAAGCTTGAGCTCTAC 119
Query 120 TGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAATTTGGAAAACATGCGT 179
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 TGATTTTCACCGAGCAAAAACTGTTTGCTCAGATTGGTATTCAAATTGGAAAACATGCGT 179
Query 180 GAAGCGTCCTCTTTGTCCATGGCGGATCATATACGTAAAATATTCTTTGATGTTGTTCAA 239
||| | ||||||||||||||||||||||| ||||||||| |||| ||||||||||||||
Sbjct 180 GAA--G-CCTCTTTGTCCATGGCGGATCATGTACGTAAAAGATTCATTGATGTTGTTCAA 236
Query 240 TCCCCGAGAAGACAAGATCTACGAAGGAACAAACGTTGGACTCTCCAAAGACAGCTATTT 299
||| ||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 237 ACCCGGAGAAGACAAGATTTACAAAGGAACAAACGTTGGACTCTCCAACGACAGCTATTA 296
Query 300 TATGGCTGGCTCCGGGAATTGGCTCTTGATGGTAGATTCTCATCTCGATTTTTACATTTT 359
||||||| ||||||| || |||||||||||||||||||||||||||| ||| ||||||||
Sbjct 297 TATGGCTAGCTCCGGAAACTGGCTCTTGATGGTAGATTCTCATCTCGGTTTCTACATTTT 356
Query 360 TAACCTGTTAACGTA-CAAAAGAATCGATCTTCCATCTATGGAGTCTTCAATTCGCGGTG 418
||||||||||||| | ||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 357 TAACCTGTTAACG-AGCAAAAGAATTGATCTTCCATCAATGGAGTCTTCAATTCGCGGTG 415
Query 419 GGAATGTGAGATTCGAGCGAAACCGCGAGCATGGATTCAGCGAGTGGGGACACTTTGTTG 478
| || ||||||||||||| ||||| |||||||||||||| | |||||||||||||| |
Sbjct 416 GAAAAGTGAGATTCGAGCAAAACCACGAGCATGGATTCA---ACTGGGGACACTTTGTCG 472
Query 479 ATCCATGTCGTAAGGATT---GTGTGAGGAAAGACATCATCATATGCCG-AAGAT-CAGC 533
| || | |||||||| || |||| | ||| | | ||||| | | | ||| | |||
Sbjct 473 AACCTTCTCGTAAGG-TTACCGTGTCA-AAAATA-ACCATCACACG-GGAAAG-TAGAGC 527
Query 534 TGTTTTATGGATAGATGAGAAAACAGGAGATTATGTGGTTGCTTGGATTTTCAATTATCA 593
|||| | |||||||| |||| ||||||||||| |||||||||||||||||| || ||||
Sbjct 528 TGTTCTGTGGATAGACGAGAGAACAGGAGATTTTGTGGTTGCTTGGATTTTTAACTATCG 587
Query 594 TTACTTATTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTTGAG 653
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 588 TTACTTGTTCTCATACAAGAAAGGAGATGATTCGTGGTGGAACTGGAATAACCATTGGAA 647
Query 654 TATGGAAAGCCTAAATTTCAGTTTTTTGGACTTGGCTTATAGAAACAGCAAGCTTTATCT 713
|||||||||| | ||||| ||||||||||| |||||||| |||||||||||||||||| |
Sbjct 648 TATGGAAAGCTTGAATTTAAGTTTTTTGGATTTGGCTTACAGAAACAGCAAGCTTTATAT 707
Query 714 CTATACCACTAATG-GTCACATCAAAATTGTTGATTTCTCTGGAAATGATCCCATAGAAG 772
||| | ||||| | ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 708 CTACATTACTAA-GAGTCACATCAAAGTTGTTGATTTCTCTGGAAATGATCCCATAGAAG 766
Query 773 TAATCGGA-AAAAACCCATATTGGGAACATCCGTTTCGATACTTTTCaaaaaaaGGGGAA 831
||||| || |||||||| |||||||||||||||||||||||||| | ||||||||||||
Sbjct 767 TAATC-GATAAAAACCCGTATTGGGAACATCCGTTTCGATACTTAACCAAAAAAGGGGAA 825
Query 832 TACAATTGCAA-AA-A-GAAAATAGTC-ATTCAGAAATCAGGAGACGTTTTGATTATCTT 887
||| ||| || || | || ||||| | ||||||||||||||||||||||||||||||||
Sbjct 826 TAC-ATT--AATAAGAGGAGAATAG-CGATTCAGAAATCAGGAGACGTTTTGATTATCTT 881
Query 888 GAGTGCATTAGTGA-TGAGATCGAAGGACAAAATTTTGTTTTACATCTTTAAGATGAACC 946
||||| ||||| | ||||| || || ||| |||| |||||||||||||||||||| |
Sbjct 882 GAGTGTATTAG-CACAAAGATCAAAAGAGAAAGTTTTATTTTACATCTTTAAGATGAATC 940
Query 947 CTGAGAGTAACATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTG 1006
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 941 TTGCGAGTAAAATATGGGAAAGAGTAGAATCTATTGGAGATGATGAGATGTTGATCTTTG 1000
Query 1007 GTCATGGGGTTACAATAAGAGCACCCGTTCACGATGTTGATGTTGGTGATGATGGAATCA 1066
||||||||||||| ||||||||||| ||||| | | |||||||||||| | |||||
Sbjct 1001 GTCATGGGGTTACGATAAGAGCACCGGTTCA--A-G---ATGTTGGTGATG--G-AATCA 1051
Query 1067 AGAGTGGTTCAATCTATTTCGCTGTAGATGACTTACAGCCA--ATAT-ATTATCATGCTG 1123
||||||||||||| | ||||| | || |||| || |||| |||| ||| || |||||
Sbjct 1052 AGAGTGGTTCAATATGTTTCG-TC-AG-TGACGTATGGCCACCATATTATTCTCCTGCTG 1108
Query 1124 TTTCAAATTGCGGTGTCTTTGATCTTGCAACAAGTATAATCAAATGGCCTAAGGAAGACA 1183
| ||||||| |||||||| ||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1109 CTACAAATTGGGGTGTCTTCGATCTTGCAACAAGTATAATCAAATGGTCTAAGAAAGACA 1168
Query 1184 GTTTTAATAATAGATTTGTTAAAACTCAGTGGTTTGTTCCAGGATTTGCTTAG 1236
||||||||||||||| |||| ||||| | | |||| |||||||||||||||||
Sbjct 1169 GTTTTAATAATAGATATGTTCAAACTTATTTGTTTTTTCCAGGATTTGCTTAG 1221
> AT2G03610.1 | Symbols: | F-box family protein | chr2:1099070-1100202
FORWARD LENGTH=651
Length=651
Score = 139 bits (75), Expect = 6e-32
Identities = 204/260 (78%), Gaps = 33/260 (13%)
Strand=Plus/Plus
Query 985 GATG-ATGAGATGTTGATCTTTGGTCATGGGGTTACAATAAGAGCACCCGTTCACGATGT 1043
|||| |||||||||||||||||||||||||||||||||| ||||||| ||||| ||
Sbjct 417 GATGAATGAGATGTTGATCTTTGGTCATGGGGTTACAATGAGAGCACAAGTTCA---TG- 472
Query 1044 TGATGTTGGTGATGATGGAATCAAGAGTGG-TTCAATCTATTTCGCTGTAGATGA-CTTA 1101
|||||||||||| | ||||||||| || |||||||| ||||| || |||||| |||
Sbjct 473 --ATGTTGGTGATG--G-AATCAAGAG-GGATTCAATCTGTTTCGTTGAAGATGATCTTT 526
Query 1102 CAGCCA-ATATATT-ATCATGCTGTTTCAAATTGCGGTGTCTTTGATCTTGCAACAAGTA 1159
||| || | || ||| | || | ||||||||||| |||| ||||||| |||||||
Sbjct 527 G-GCCGGAT-T-TTGATCGTCCT-T--CAAATTGCGGTATCTTCAATCTTGCCACAAGTA 580
Query 1160 TAATCAA-ATGGCCTAAG-GAAGACAGT-TTTAATAATAGATTTGTTAAAACTCAGTGGT 1216
||| || |||||||||| || || || |||| | ||||| ||||| | ||||
Sbjct 581 GAAT-AACATGGCCTAAGAGAT-ACGGTGTTTAC-A-TAGATCA---AAAACA-A-TGGT 631
Query 1217 TTGTTCCAGGATTTGCTTAG 1236
|| |||||||||||||||||
Sbjct 632 TTCTTCCAGGATTTGCTTAG 651
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60742659450
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5