BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494159
Length=2141
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38210.1 | Symbols: | Protein kinase family protein | chr5:... 2981 0.0
AT5G38212.1 | Symbols: | Potential natural antisense gene, loc... 907 0.0
> AT5G38210.1 | Symbols: | Protein kinase family protein | chr5:15261005-15265630
FORWARD LENGTH=2345
Length=2345
Score = 2981 bits (1614), Expect = 0.0
Identities = 1962/2125 (92%), Gaps = 43/2125 (2%)
Strand=Plus/Plus
Query 1 AAAAAGAAACTACTTTTCAGATATCAATCATGTTCTCTCCACTACTCTTCAGATTCTCAA 60
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2 AAAAAGAAACTACTTTCCAGATATCAATCATGTTCTCTCCAGTACTCTTCAGATTCTCAA 61
Query 61 AACCTAAttcttttctggtccttctcttcttcttgtccttct-ttaactgtcttccttGT 119
|||||||||||||||||||||||||||||||||| ||| | | || ||| ||||||||||
Sbjct 62 AACCTAATTCTTTTCTGGTCCTTCTCTTCTTCTTATCC-TATATTCACTTTCTTCCTTGT 120
Query 120 GCTCTAAGTCAACGAGAACCATGTGATACTCTGTTTCGTTGTGGGAATCTCACAGCCGGT 179
|||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||
Sbjct 121 GCTCAAAGTCAACGAGAACCATGTGACACTCTGTTTCGTTGTGGGGATCTCACAGCCGGT 180
Query 180 TTCCCTTTCTGGGGAGTGGCTCGGCCCCAACCTTGTGGTCATCCATCTTTAGGGCTTCAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 TTCCCTTTCTGGGGAGTGGCTCGGCCCCAACCTTGTGGTCATCCATCTTTAGGACTTCAC 240
Query 240 TG-CAATAAACAATCGAATTCGACTTCTTCGACTTCTCTAATCATCTCAGGTCTGATGTA 298
|| ||| |||||| | || | |||||||||||||||||||||| ||||||||||
Sbjct 241 TGCCAA-AAACAAAC-AA----A----TTCGACTTCTCTAATCATCTCAAGTCTGATGTA 290
Query 299 CCGTGTTCTCGAAGTAAATATCACAAATAGTACTACTCTTAAATTAGTAAGGCAAGACTT 358
|||||||||||||||||||| | | | || || |||||||||||||||||||||||||||
Sbjct 291 CCGTGTTCTCGAAGTAAATA-C-C-ACTACTAGTACTCTTAAATTAGTAAGGCAAGACTT 347
Query 359 TTCAGGTCCATTCTGCTCGGCTTCATTCAGCGGTGCAACGTTGGCTCCTGAACTCTTTGA 418
||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||
Sbjct 348 TTCAGGTCCATTCTGCTCGGCTTCATTCAGCGGAGCAACGTTGACTCCTGAACTTTTTGA 407
Query 419 GCTTTTGCCGGACTACAAGACCCTCTCCGCTTACTACCTCTGCAACCCTCA-TCTTCATT 477
||||||||| ||||||||||||||||||||||||||||||||||||||| | |||||| |
Sbjct 408 GCTTTTGCCAGACTACAAGACCCTCTCCGCTTACTACCTCTGCAACCCT-AGTCTTCACT 466
Query 478 ATCCTGCGAATTTCACATGTCCAAATAAGGGTGTTGGCTTGATGTATCAGGATGATTTGT 537
|||||||||| |||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 467 ATCCTGCGAAATTCATATGTCCAAATAAGGGTGTTGGCTCAATACATCAGGATGATTTGT 526
Query 538 ATCACAATAACTGTGGTGGGAGTTTCAACATCACTGTTCCGATAGGTTATGCCCCAGAGG 597
|||||||| |||||||||||| |||||||||||||||||| ||||||||||| |||||||
Sbjct 527 ATCACAATCACTGTGGTGGGATTTTCAACATCACTGTTCCCATAGGTTATGCTCCAGAGG 586
Query 598 -AGGAAGGTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGATTCGAGGTGAAG 656
||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 587 AAGG-AGCTTTGAATGTAACCAATTTGGAAAGTGTTCTTAAAAAAGGATTTGAGGTGAAA 645
Query 657 CTGAGTATTGACGAGAGACCGTGTAAAGAATGTAAATCCACTGGTGGAATTTGCGCCTAC 716
|| || || || |||||||||||| ||||||||||| ||| ||||||||| |||||||||
Sbjct 646 CTTAGCATCGATGAGAGACCGTGTCAAGAATGTAAAACCAATGGTGGAATCTGCGCCTAC 705
Query 717 CAGGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAACTCGAA-TGCATC-C 774
|| |||||||||||||||||||||||||||||||||||||||||| || || |||| | |
Sbjct 706 CATGTTGCAACTCCGGTTTGCTGCAAGACAAACTCGTCATCAGAAGTC-AATTGCA-CTC 763
Query 775 CAATGATTCCATCAGGATCTAGTGTTCAAGCAGGTCTCTCCAAAAAAGCGAAAATTGGCA 834
||||||| ||||| |||||||||| ||| ||||||||||||||||||| |||||| ||||
Sbjct 764 CAATGATGCCATCTGGATCTAGTGCTCATGCAGGTCTCTCCAAAAAAGGGAAAATAGGCA 823
Query 835 TTGGATTCGCTTCTGGATTCTTGGGTGCCACTCTTATAGGCGGATGTTTGTTCTGTATCT 894
| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||
Sbjct 824 TCGGATTCGCTTCTGGATTCTTGGGTGCCACACTTATCGGCGGATGTTTACTCTGTATCT 883
Query 895 TCATCCGGCGAAGGAAGAAACTTGCAGCACAATACACAAGCAAAGGCCTATCAACAAC-A 953
|||||||| ||||||||||||| ||| |||||||||||| |||||||||||||||||| |
Sbjct 884 TCATCCGGAGAAGGAAGAAACTAGCAACACAATACACAAACAAAGGCCTATCAACAACAA 943
Query 954 -A-C-GACT-TA-C-----T-CAATGTCAAACACTCCAACTTCCACAACAATATCTGGCA 1002
| | ||| | | | ||||||||||||||||||| ||||||||||| |||||||
Sbjct 944 CACCTTACTCAAGCAATTATACAATGTCAAACACTCCAACCTCCACAACAATCTCTGGCA 1003
Query 1003 GCAATCACTCTCTTATACCTTCAATGTCTAACCTTGCAAATGGAAGCGTCTACTTTGGAG 1062
|||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| ||||
Sbjct 1004 GCAATCACTCTCTTGTACCTTCAATATCTAACCTTGGAAACGGAAGCGTCTACTCTGGAA 1063
Query 1063 TTCAAGTCTTCAGCTACGAAGAACTCGAAGAAGCCACTGAGAATTTCTCTAAAGAGCTTG 1122
|||||||||||||||||||||||||||| ||||||||||| |||||||| ||||| || |
Sbjct 1064 TTCAAGTCTTCAGCTACGAAGAACTCGAGGAAGCCACTGAAAATTTCTCCAAAGAACTCG 1123
Query 1123 GAGATGGAGGCTTCGGTACTGTCTACTACGGTGTACTAAAAGACGGACGAGCTGTAGCTG 1182
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 1124 GAGATGGAGGCTTCGGTACTGTCTACTACGGTACACTAAAAGACGGACGAGCAGTAGCTG 1183
Query 1183 TAAAACGACTCTTCGAAAGATCACTAAAACGCGTGGAACAATTCAAGAACGAAATCGAGA 1242
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1184 TGAAACGACTCTTCGAAAGATCACTAAAACGCGTGGAACAATTCAAGAACGAAATCGATA 1243
Query 1243 TCTTGAAATCCTTAAAACACCCGAACCTAGTGATTCTATACGGATGCACAACAAGACATA 1302
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1244 TCTTGAAATCCCTAAAACACCCGAACCTAGTGATTCTATACGGATGCACAACAAGACATA 1303
Query 1303 GCAGAGAGTTACTCCTAGTCTACGAATACATTTCCAATGGCACACTCGCTGAACATCTCC 1362
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1304 GCAGAGAGTTACTCCTAGTATACGAATACATCTCCAATGGCACACTCGCTGAACATCTCC 1363
Query 1363 ATGGAAACCAAGCACAATCTCGCCCTATTTGTTGGCCTGCTCGACTCCAAATCGCCATCG 1422
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1364 ATGGAAACCAAGCACAATCTCGCCCTATTTGTTGGCCTGCTCGACTCCAAATAGCCATCG 1423
Query 1423 AAACCGCAAGCGCATTGTCCTATCTCCACACCTCAGGGATCATACACAGAGATGTCAAAA 1482
||||||| ||||| ||||||||||||||| |||||||||||||||||||||| || || |
Sbjct 1424 AAACCGCTAGCGCCTTGTCCTATCTCCACGCCTCAGGGATCATACACAGAGACGTTAAGA 1483
Query 1483 CTACTAACATTCTTC-TAGATAGCAATTACCAAGTGAAAGTAGCCGATTTCGGACTTTCG 1541
|||||||||||| || ||||||||||||||||||| |||||||| ||||||||||| ||
Sbjct 1484 CTACTAACATTC-TCTTAGATAGCAATTACCAAGTCAAAGTAGCTGATTTCGGACTCTCA 1542
Query 1542 CGGTTGTTTCCGACGGATCAAACTCATATCTCCACCGCACCACAAGGTACTCCGGGATAT 1601
||||||||||||| |||||||||||| |||||||| || |||||||||||||| ||||||
Sbjct 1543 CGGTTGTTTCCGATGGATCAAACTCACATCTCCACTGCTCCACAAGGTACTCCAGGATAT 1602
Query 1602 GTAGATCCTGAGTATTACCAATGTTACCG-TCTAAACGAGAAGAGCGACGTATACAGCTT 1660
||||||||||||||||||||||||||||| | ||||||||||||| ||||| ||||||||
Sbjct 1603 GTAGATCCTGAGTATTACCAATGTTACCGAT-TAAACGAGAAGAGTGACGTTTACAGCTT 1661
Query 1661 CGGAGTCGTCCTCTCCGAACTAATCTCATCAAAAGAAGCCGTCGATATCACCAGACACCG 1720
||||||||| |||||||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 1662 CGGAGTCGTACTCTCCGAACTAATCTCATCGAAAGAAGCTGTTGATATCACCAGACACCG 1721
Query 1721 CCACGATATTAACCTAGCGAACATGGCGATTTCGAAAATCCAAAACGACGCCGTTCACGA 1780
||||||||||||||| || ||||||||||||||||||||||||||||||||||| || ||
Sbjct 1722 CCACGATATTAACCTCGCCAACATGGCGATTTCGAAAATCCAAAACGACGCCGTACATGA 1781
Query 1781 ACTCGCGGATCTATCACTCGGATTCGCGAGAGATCCTTCGGTGAAGAAGATGATGTCGTC 1840
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1782 GCTCGCGGATCTATCACTCGGATTCGCGAGAGATCCTTCGGTGAAGAAGATGATGTCGTC 1841
Query 1841 GGTTGCTGAATTAGCGTTCCGGTGTTTGCAACAAGAGAGAGAAGTACGACCATCGATGGA 1900
||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||
Sbjct 1842 GGTTGCTGAATTAGCATTCCGATGTTTGCAACAGGAGAGAGACGTACGGCCATCGATGGA 1901
Query 1901 TGAGATCGTTGAGATTTTGAGAGGGATTCAGAAGGAAGGGATTAA-AGATTCGAAGGATG 1959
||||||||||||| ||||||||| |||||||||||| |||| ||| |||||||||||||
Sbjct 1902 TGAGATCGTTGAGGTTTTGAGAGTGATTCAGAAGGATGGGA-TAAGTGATTCGAAGGATG 1960
Query 1960 TGGTGGTGGAGATTGATGTGAACGGTGGTGATGATGTTGGATTGTTGAAGCATGGTGTTC 2019
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1961 TGGTTGTGGAGATTGATGTGAACGGTGGTGATGATGTTGGATTGTTGAAGCATGGTGTTC 2020
Query 2020 CTCCGCCGTTATCGCCGGAGACTGATAAAATGACGGCGAGTAGTTCGAATACGACGGCGA 2079
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 2021 CTCCGCCGTTATCGCCGGAGACTGATAAAACGACGGCGAGTAGTTCGAATACTACGGCGA 2080
Query 2080 GTTCGTTTTGAAAGAGAGTAGGAAG 2104
|||||||||||| ||||||||||||
Sbjct 2081 GTTCGTTTTGAA-GAGAGTAGGAAG 2104
> AT5G38212.1 | Symbols: | Potential natural antisense gene, locus
overlaps with AT5G38210 | chr5:15262454-15265241 REVERSE
LENGTH=2413
Length=2413
Score = 907 bits (491), Expect = 0.0
Identities = 593/641 (93%), Gaps = 12/641 (2%)
Strand=Plus/Minus
Query 831 GGCATTGGATTCGCTTCTGGATTCTTGGGTGCCACTCTTATAGGCGGATGTTTGTTCTGT 890
||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| |||||
Sbjct 1094 GGCATCGGATTCGCTTCTGGATTCTTGGGTGCCACACTTATCGGCGGATGTTTACTCTGT 1035
Query 891 ATCTTCATCCGGCGAAGGAAGAAACTTGCAGCACAATACACAAGCAAAGGCCTATCAACA 950
|||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||||
Sbjct 1034 ATCTTCATCCGGAGAAGGAAGAAACTAGCAACACAATACACAAACAAAGGCCTATCAACA 975
Query 951 AC-A-A-C-GACT-TA-C-----T-CAATGTCAAACACTCCAACTTCCACAACAATATCT 998
|| | | | ||| | | | ||||||||||||||||||| ||||||||||| |||
Sbjct 974 ACAACACCTTACTCAAGCAATTATACAATGTCAAACACTCCAACCTCCACAACAATCTCT 915
Query 999 GGCAGCAATCACTCTCTTATACCTTCAATGTCTAACCTTGCAAATGGAAGCGTCTACTTT 1058
|||||||||||||||||| |||||||||| |||||||||| ||| ||||||||||||| |
Sbjct 914 GGCAGCAATCACTCTCTTGTACCTTCAATATCTAACCTTGGAAACGGAAGCGTCTACTCT 855
Query 1059 GGAGTTCAAGTCTTCAGCTACGAAGAACTCGAAGAAGCCACTGAGAATTTCTCTAAAGAG 1118
||| |||||||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 854 GGAATTCAAGTCTTCAGCTACGAAGAACTCGAGGAAGCCACTGAAAATTTCTCCAAAGAA 795
Query 1119 CTTGGAGATGGAGGCTTCGGTACTGTCTACTACGGTGTACTAAAAGACGGACGAGCTGTA 1178
|| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 794 CTCGGAGATGGAGGCTTCGGTACTGTCTACTACGGTACACTAAAAGACGGACGAGCAGTA 735
Query 1179 GCTGTAAAACGACTCTTCGAAAGATCACTAAAACGCGTGGAACAATTCAAGAACGAAATC 1238
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 734 GCTGTGAAACGACTCTTCGAAAGATCACTAAAACGCGTGGAACAATTCAAGAACGAAATC 675
Query 1239 GAGATCTTGAAATCCTTAAAACACCCGAACCTAGTGATTCTATACGGATGCACAACAAGA 1298
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 GATATCTTGAAATCCCTAAAACACCCGAACCTAGTGATTCTATACGGATGCACAACAAGA 615
Query 1299 CATAGCAGAGAGTTACTCCTAGTCTACGAATACATTTCCAATGGCACACTCGCTGAACAT 1358
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 614 CATAGCAGAGAGTTACTCCTAGTATACGAATACATCTCCAATGGCACACTCGCTGAACAT 555
Query 1359 CTCCATGGAAACCAAGCACAATCTCGCCCTATTTGTTGGCCTGCTCGACTCCAAATCGCC 1418
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 554 CTCCATGGAAACCAAGCACAATCTCGCCCTATTTGTTGGCCTGCTCGACTCCAAATAGCC 495
Query 1419 ATCGAAACCGCAAGCGCATTGTCCTATCTCCACACCTCAGG 1459
||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 494 ATCGAAACCGCTAGCGCCTTGTCCTATCTCCACGCCTCAGG 454
Score = 638 bits (345), Expect = 0.0
Identities = 413/446 (93%), Gaps = 4/446 (1%)
Strand=Plus/Minus
Query 1512 CAAGTGAAAGTAGCCGATTTCGGACTTTCGCGGTTGTTTCCGACGGATCAAACTCATATC 1571
||||| |||||||| ||||||||||| || ||||||||||||| |||||||||||| |||
Sbjct 444 CAAGTCAAAGTAGCTGATTTCGGACTCTCACGGTTGTTTCCGATGGATCAAACTCACATC 385
Query 1572 TCCACCGCACCACAAGGTACTCCGGGATATGTAGATCCTGAGTATTACCAATGTTACCG- 1630
||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 384 TCCACTGCTCCACAAGGTACTCCAGGATATGTAGATCCTGAGTATTACCAATGTTACCGA 325
Query 1631 TCTAAACGAGAAGAGCGACGTATACAGCTTCGGAGTCGTCCTCTCCGAACTAATCTCATC 1690
| ||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 324 T-TAAACGAGAAGAGTGACGTTTACAGCTTCGGAGTCGTACTCTCCGAACTAATCTCATC 266
Query 1691 AAAAGAAGCCGTCGATATCACCAGACACCGCCACGATATTAACCTAGCGAACATGGCGAT 1750
|||||||| || |||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 265 GAAAGAAGCTGTTGATATCACCAGACACCGCCACGATATTAACCTCGCCAACATGGCGAT 206
Query 1751 TTCGAAAATCCAAAACGACGCCGTTCACGAACTCGCGGATCTATCACTCGGATTCGCGAG 1810
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 205 TTCGAAAATCCAAAACGACGCCGTACATGAGCTCGCGGATCTATCACTCGGATTCGCGAG 146
Query 1811 AGATCCTTCGGTGAAGAAGATGATGTCGTCGGTTGCTGAATTAGCGTTCCGGTGTTTGCA 1870
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 145 AGATCCTTCGGTGAAGAAGATGATGTCGTCGGTTGCTGAATTAGCATTCCGATGTTTGCA 86
Query 1871 ACAAGAGAGAGAAGTACGACCATCGATGGATGAGATCGTTGAGATTTTGAGAGGGATTCA 1930
||| |||||||| ||||| |||||||||||||||||||||||| ||||||||| ||||||
Sbjct 85 ACAGGAGAGAGACGTACGGCCATCGATGGATGAGATCGTTGAGGTTTTGAGAGTGATTCA 26
Query 1931 GAAGGAAGGGATTAAA-GATTCGAAG 1955
|||||| ||||| || |||||||||
Sbjct 25 GAAGGATGGGAT-AAGTGATTCGAAG 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 106174152675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5