BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494163
Length=788
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38140.1 | Symbols: NF-YC12 | nuclear factor Y, subunit C12 ... 704 0.0
> AT5G38140.1 | Symbols: NF-YC12 | nuclear factor Y, subunit C12
| chr5:15220208-15222272 REVERSE LENGTH=890
Length=890
Score = 704 bits (381), Expect = 0.0
Identities = 472/514 (92%), Gaps = 13/514 (3%)
Strand=Plus/Plus
Query 173 TTCGGTCTAATCATCCTGCGACAAGCAAGAACGAGGGGACCTCTTCATTGGACACAGCTC 232
|||| ||||||||||||| |||||||||| ||||||| |||||| |||||||||||||
Sbjct 216 TTCGATCTAATCATCCTGAAACAAGCAAGATCGAGGGGGTCTCTTCGTTGGACACAGCTC 275
Query 233 TGAAGGTGTTTTGGAATAATCAAAGGGAACAACTAGGAAACTTTGCAGGCCAAACTTATT 292
|||||||||||||||||||||||||||| || |||||||||||||||||||||||| |||
Sbjct 276 TGAAGGTGTTTTGGAATAATCAAAGGGAGCAGCTAGGAAACTTTGCAGGCCAAACTCATT 335
Query 293 TGCCGCTATCTAGGGTCAGAAAGATTTTGAAATCCAATCCTGAAGTCAAGAAGATAAGCT 352
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 336 TGCCGCTATCTAGGGTCAGAAAGATTTTGAAATCTGATCCTGAAGTCAAGAAGATAAGCT 395
Query 353 GTGATGTTCCTGCCTTGTTTTCGAAAGCTTGTGAATACTTTATTCTAGAGCTAACATTAC 412
||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 396 GTGATGTTCCTGCTTTGTTTTCGAAAGCCTGTGAATACTTCATTCTAGAGGTAACATTAC 455
Query 413 GAGCATGGATGAATACTCAATCATGCACTCGTCAGACCATCCGGCGTTGTGATATCTTCC 472
|||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 456 GAGCTTGGATGCATACTCAATCATGCACTCGTGAGACCATCCGGCGTTGTGATATCTTCC 515
Query 473 AGGCCGTAAAGAACTCAGGAACTTATGATTTCCTGATTGATCATGTTCCTTTTGGACCGC 532
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 516 AGGCCGTAAAGAACTCAGGAACTTATGATTTCCTGATTGATCGTGTCCCTTTTGGACCGC 575
Query 533 ACTGTGTCGTCCATCAGGGTGTGCCAAC-TCCTGCTGAAATGATTTTGCCGGACATGAAT 591
|||||||| |||||||||||||| ||| |||||||||||||||||||||||| ||||||
Sbjct 576 ACTGTGTCACCCATCAGGGTGTGC-AACCTCCTGCTGAAATGATTTTGCCGGATATGAAT 634
Query 592 GTTCCAATCGATATGGACCAGATTGAGCAGGAGAATCTGACTG-AAGAGTGCTCTATCAA 650
||||||||||||||||||||||||||| |||||||| ||| || ||||| ||||| ||
Sbjct 635 GTTCCAATCGATATGGACCAGATTGAGGAGGAGAATATGA-TGGAAGAGCGCTCTGTC-- 691
Query 651 TAATAGAGGGTTTGACCTCAACTCTGATCTCCAG 684
| || ||||||||||||| ||||||||||
Sbjct 692 -----G-GG-TTTGACCTCAACTGTGATCTCCAG 718
Score = 272 bits (147), Expect = 3e-72
Identities = 166/175 (95%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 1 TGGTTCTTTCGTATGTACGCCTCACGAGCCCCACGAGGTATATCCTTACTAACGTCTCCA 60
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 TGGTTCTTTCGTATGTATGCCTCACGAGCTCCACGAGGTATATCCTTACTAACGTCTCCA 60
Query 61 TATATAGACACCCCT-GTTCTTGCCAACCTCTACATCTTCAAAGATTTTTCATCATCTCT 119
|||||||| | |||| ||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 61 TATATAGAGAACCCTTGTTCTTGCCAAACTCTACATCTTCAAAGATTTTTCATCATCTGT 120
Query 120 TGTGAAATATAACATGAGGAGGCCAAAGTCATCTCGCATCAGGATGGAACCTGTT 174
||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 121 TGTGAAATATAACATGAGGAGGCCAAAGTCATCTCACGTCAGGATGGAACCTGTT 175
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38328654161
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5