BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494165
Length=1738
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38120.1 | Symbols: 4CL8 | AMP-dependent synthetase and liga... 2281 0.0
> AT5G38120.1 | Symbols: 4CL8 | AMP-dependent synthetase and ligase
family protein | chr5:15213765-15216205 FORWARD LENGTH=1729
Length=1729
Score = 2281 bits (1235), Expect = 0.0
Identities = 1587/1753 (91%), Gaps = 39/1753 (2%)
Strand=Plus/Plus
Query 1 AAAGAATAATGGCGAATTCCCAAAG------ATCTCTGATCGATCCAAGAAACGGTTTCT 54
||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||
Sbjct 1 AAAGAATAATGGCGAATTCTCAAAGATCATCATCTCTGATCGATCCAAGGAACGGTTTCT 60
Query 55 GCA-ATGCAAACTCCACATTTTACAGTAAACGCAAACCATTAGCCCTTCCATCAAACGAC 113
||| || |||||||||||||||||||||||||||||||||| || ||||| ||||| ||
Sbjct 61 GCACAT-CAAACTCCACATTTTACAGTAAACGCAAACCATTGGCACTTCCTTCAAAAGAA 119
Query 114 TCGCTCGACGTCACAACATTCATCTCCTCCCAAACGCACCGTGGCACAACCGCCTTCATA 173
|| |||||| |||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 120 TCACTCGACATCACAACATTCATCTCCTCCCAAACGTACCGTGGCAAAACCGCCTTCATA 179
Query 174 GACGCTGCCACGGACCACCGCATAAGCTTCTCTGAGTTATGGA-GAGCCGTCGATCGTTT 232
||||| |||||||||||||||||||||||||| || ||||||| | ||||| |||||| |
Sbjct 180 GACGCAGCCACGGACCACCGCATAAGCTTCTCCGATTTATGGATG-GCCGTGGATCGTGT 238
Query 233 GGCTAACTGTCTCCACCACGACGTCGGAATACAGAGAGGTGACGTTGTCCTTGTCCTCTC 292
|| ||||||||| ||||||||| ||||||| |||||||||||| ||||| ||||||||
Sbjct 239 CGCCGACTGTCTCCTCCACGACGTGGGAATACGGAGAGGTGACGTGGTCCTAGTCCTCTC 298
Query 293 TCCCAACTCCATTTCCATCCCCATTGTCTGCCTCTCCGTTATGTCTCTTGGAGCCGT-TG 351
||||||| |||| |||||||||||||||||||||||||| ||||||||||| || || |
Sbjct 299 TCCCAACACCATCTCCATCCCCATTGTCTGCCTCTCCGTGATGTCTCTTGGCGCTGTCT- 357
Query 352 TCACCACTG-TAAATCCTCTCAACACAGCCGGTGAAATCTCT-AGACAAATCGCCGATAG 409
| || || | | |||||||||||||| || ||||||||| | ||||||||||| |||||
Sbjct 358 TAACTACCGCT-AATCCTCTCAACACCGCTAGTGAAATCT-TAAGACAAATCGCGGATAG 415
Query 410 TAATCCAAAGCTCGCTTTCACAACCA-CAGAGCTGGCTTCCAAACTTGCCGGTTCTGATA 468
|||||||| ||||| ||||||| || | || |||||| ||||| | ||| |||| | ||
Sbjct 416 CAATCCAAAACTCGCCTTCACAA-CACCGGAACTGGCTCCCAAAATCGCCAGTTCCGGTA 474
Query 469 TCTCCATCCTCCTCGAGCGCGTAGTAGACACTCTATGCGCTCCAG-GACGACTCAAAGTT 527
|||| ||| ||||||||||||||| |||||||||| ||| ||| | || ||||||||||
Sbjct 475 TCTCTATCGTCCTCGAGCGCGTAGAAGACACTCTACGCGTTCC-GAGAGGACTCAAAGTG 533
Query 528 GTTGGGATTCTAAGTGAGATGATGAAGAAAGAACCTAGGGGACAAGAAGTCATCAGAAAC 587
||||||| ||||| ||| ||||||||||||||||| || ||||||| || ||||||||
Sbjct 534 GTTGGGAATCTAACTGAAATGATGAAGAAAGAACCAAGTGGACAAGCAG---TCAGAAAC 590
Query 588 CGAGTTAACAAAGACGACACAGCGATATTGCTTTACTCGTCCGGGACAACGGGACAAAGC 647
| |||| | ||||||||||| ||||| ||||||||||| || ||||| ||||||| ||||
Sbjct 591 CAAGTTCATAAAGACGACACGGCGATGTTGCTTTACTCCTCGGGGACGACGGGACGAAGC 650
Query 648 AAAGGAGTGAATTCGTCCCACGGGAACTTAATAGCACATGTCGCAAGATACATCGCGGAG 707
||||||||||||||||| |||||||||||||||||||| || || |||||||||||||||
Sbjct 651 AAAGGAGTGAATTCGTCTCACGGGAACTTAATAGCACACGTGGCGAGATACATCGCGGAG 710
Query 708 CCATTCGAGCAGCCACAACAGACCTTCATTTGCACTGTTCCATTTTTCCACACCTTTGGT 767
||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||
Sbjct 711 CCATTCGAGCAGCCACAACAGACCTTCATTTGCACTGTTCCGTTGTTCCACACTTTTGGT 770
Query 768 TTACTAAACTTCGTTTTAGCCACCTTAGCGTTAGGTTCGACCGTTGTCATCCTCCCGAGG 827
||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||
Sbjct 771 TTACTAAACTTCGTTTTGGCCACCTTAGCGTTAGGTACGACCGTTGTCATCCTCCCGAGG 830
Query 828 TTCGACCTCGGGGAGATGATGGCAGCGGCCGAGAAATACAGAGCCACTACTCTGATTCTC 887
|| |||||||| ||||||||||| || | ||||||||||||||| || ||||||||||||
Sbjct 831 TTTGACCTCGGAGAGATGATGGCGGCTGTCGAGAAATACAGAGCGACGACTCTGATTCTC 890
Query 888 GTGCCGCCAGTTTTAGTAACTATGATAAACAGAGCGGATGAGATAATGGCGAAGTACGAC 947
||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||||||
Sbjct 891 GTGCCGCCAGTTTTAGTAACTATGATAAACAAAGCGGATCAAATAATGAAGAAGTACGAC 950
Query 948 GTGAGCTTCTTGAGAACAGTGCGGTGCGGTGGAGCACCGTTAAGCAAGGAAGTTACTGAA 1007
||||||||||||||||| |||||||||||||||||||| || ||||||||||||||| ||
Sbjct 951 GTGAGCTTCTTGAGAACGGTGCGGTGCGGTGGAGCACCTTTGAGCAAGGAAGTTACTCAA 1010
Query 1008 GGGTTTATGAAGAAATATCCAACGGTTGATGTTTATCAAGGATACGCATTGACGGAATCT 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GGGTTTATGAAGAAATATCCAACGGTTGATGTTTATCAAGGATACGCATTGACGGAATCT 1070
Query 1068 AACGGTGCAGGAGCTTCGATAGATTCAGTGGAAGAGAGTCGGAGATACGGTGCGGTGGGG 1127
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1071 AACGGTGCAGGAGCTTCGATAGAATCAGTGGAGGAGAGTCGGAGGTACGGTGCGGTGGGG 1130
Query 1128 TTGTTGTCATGTGGTGTAGAAGCGAGGATTGTGGATCCAAATACGGGTTGGGTCATGGGT 1187
|||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1131 TTGTTGTCATGTGGTGTAGAAGCGAGGATTGTGGATCCGAATACGGGTCAGGTCATGGGT 1190
Query 1188 TTGAACCAAACGGGCGAGCTTTGGCTTAAAGGGCCTTCTATTGCCAAAGGTTATTTTAGG 1247
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1191 TTGAACCAAACGGGCGAACTTTGGCTTAAAGGGCCTTCTATCGCCAAAGGTTATTTCAGG 1250
Query 1248 AACGAAGAAGAACTTATAACTTCAGAAGGATGGCTTAAAACAGGAGATCTTTGCTATATA 1307
|| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1251 AATGAAGAAGAAATTATAACTTCAGAAGGATGGCTTAAAACAGGAGATCTATGCTATATA 1310
Query 1308 GACGACGATGGATTTCTTTTTATCGTTGATCGATTGAAAGAGCTAATCAAATACAAAGGT 1367
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1311 GACAACGATGGATTTCTTTTTATCGTTGATCGATTGAAAGAGCTTATCAAATACAAAGGT 1370
Query 1368 TACCAGGTACCTCCAGCTGAACTAGAGGCTCTTTTACTAAGCCATCCAGATATTCTCGAT 1427
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1371 TACCAGGTACCTCCAGCTGAACTAGAGGCTCTCTTACTAAACCATCCAGATATTCTCGAT 1430
Query 1428 GCAGCCGTTATTCCGTTTCCAGATAAAGAAGCAGGACAATATCCGATGGCTTATGTGGCA 1487
|||||||||||||||||||||||||||||||||||||||| |||||||||||| || |||
Sbjct 1431 GCAGCCGTTATTCCGTTTCCAGATAAAGAAGCAGGACAATTTCCGATGGCTTACGTAGCA 1490
Query 1488 CGAAAGTCTG-GCAGCAATCTCTGTGAGAAGAAAG-TTATTGACTTTATTTCTAAACAGG 1545
|||||| ||| | || ||||| |||||||| |||| |||| |||||||||||||||||||
Sbjct 1491 CGAAAGCCTGAG-AGTAATCTTTGTGAGAA-AAAGGTTATCGACTTTATTTCTAAACAGG 1548
Query 1546 TGGCACCATATAAGAAAATAAGAAAGGTTGCATTTATAGACTCAATACCAAAGACTCCAT 1605
||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1549 TGGCACCATATAAGAAAATAAGAAAAGTCGCATTTATAGACTCTATACCAAAGACTCCAT 1608
Query 1606 CAGGCAAAACACTTCGCAAGGATCTACTCAAATTTGCCATTTCTAAACTTTAAAAGAATT 1665
| |||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||
Sbjct 1609 CGGGCAAAACACTTCGCAAGGATCTAATCAAATTTGCCATTTCAAAAATTTAAAAGAAT- 1667
Query 1666 GCTAGACGCTAGTTTGTCATTTTTATTTGTATGATTTTTATTTGTGACATAATAAAAGAG 1725
| | | || |||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1668 -C-A--C--TATTTTGTCATTTTTATTTGTATGA-----ATTTCTGACATAATAAAAGAG 1716
Query 1726 AATTTATATCCGC 1738
|| ||||||||||
Sbjct 1717 AAGTTATATCCGC 1729
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85943333040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5