BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494166
Length=730
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38110.1 | Symbols: SGA1, SGA01, ASF1B | anti- silencing fun... 939 0.0
AT1G66740.1 | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like hist... 407 8e-113
> AT5G38110.1 | Symbols: SGA1, SGA01, ASF1B | anti- silencing function
1b | chr5:15208470-15210215 FORWARD LENGTH=981
Length=981
Score = 939 bits (508), Expect = 0.0
Identities = 613/664 (92%), Gaps = 5/664 (1%)
Strand=Plus/Plus
Query 1 GGGTCTCTCTAGATTTCGATGAAATTTCGAGAATCTAGGGTTTCAAACTAAAATTGAGTC 60
||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 88 GGGTCTCTCTAGATTTCTTTGAAATTTCGAGAATCTAGGGTTTCAAACTAAAATCGAGTC 147
Query 61 TTTGAGATTTGCCAATTT---TCATTATGAGCTCCATCAATATCACTAACGTCACCGTCT 117
||||| ||| ||||||| || |||||||||| |||||||||||||||||||||||||
Sbjct 148 CTTGAGTTTTCCCAATTTAAATCGTTATGAGCTCTATCAATATCACTAACGTCACCGTCT 207
Query 118 TGGACAATCCAGCGCCATTCGTGAATCCATTCCAGTTCGAGATCTCTTACGAATGCTTGA 177
|||||||||| || || || ||||||||||||||||||||||| ||||||||||||||||
Sbjct 208 TGGACAATCCTGCTCCGTTTGTGAATCCATTCCAGTTCGAGATTTCTTACGAATGCTTGA 267
Query 178 CTTCTCTCAAAGACGATTTGGAATGGAAGCTTATCTACGTAGGATCAGCTGAAGATGAAA 237
| |||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||
Sbjct 268 CCTCTCTCAAAGACGATTTGGAATGGAAGCTTATATACGTAGGGTCAGCTGAAGACGAAA 327
Query 238 CCTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAATTACCGAT 297
| |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 328 CGTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGTCCTGTTAACGTTGGGAACTATCGAT 387
Query 298 TTGTGTTACAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTG 357
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 388 TTGTGTTGCAGGCTGACTCTCCAGATCCGTTAAAGATTCGTGAGGAAGATATTATTGGTG 447
Query 358 TAACTGTGCTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATTAGAGTTGGCTATT 417
| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 448 TTACTGTGTTATTGTTGACTTGCTCATACATGGATCAAGAGTTTATAAGAGTTGGCTATT 507
Query 418 ATGTCAACAATGACTATGATGATGAACAACTCAGGGAAGAGCCTCCTACCAAGGTTTTGA 477
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 508 ATGTGAACAATGACTATGATGATGAACAGCTCAGGGAAGAGCCTCCTACCAAGGTTTTGA 567
Query 478 TTAATAAAGTCCAAAGGAACATACTCACGGACAAACCTCGAGTCACTAAGTTCCCTGTCA 537
|| |||| |||||||||||||||||||| ||||||||| |||| |||||||||||| |||
Sbjct 568 TTGATAAGGTCCAAAGGAACATACTCACAGACAAACCTAGAGTAACTAAGTTCCCTATCA 627
Query 538 ACTTTCATCCTGCGGATGAGCAGGCTGGTGGTGATGGGCCTCCACCTGCTGAACCATTTG 597
|||||||||||| | |||||||| || ||||||||||||| ||||| ||||||||||||
Sbjct 628 ACTTTCATCCTGAGAATGAGCAGACTCTTGGTGATGGGCCTGCACCTACTGAACCATTTG 687
Query 598 ATGATTCTGTTGTGAATGGAGAAGCTC-GAGTGTTGGTTGAGCAGTCACAAAAACTCCAG 656
|||||||||||| ||||||||||||| | ||||| |||||||| ||||||| || |||
Sbjct 688 CTGATTCTGTTGTAAATGGAGAAGCTCCG-GTGTTTCTTGAGCAGCCACAAAAGCTTCAG 746
Query 657 GAGA 660
||||
Sbjct 747 GAGA 750
> AT1G66740.1 | Symbols: AtSP7, SP7, SGA2, ASF1A | ASF1 like histone
chaperone | chr1:24892340-24893766 FORWARD LENGTH=1055
Length=1055
Score = 407 bits (220), Expect = 8e-113
Identities = 392/476 (82%), Gaps = 8/476 (2%)
Strand=Plus/Plus
Query 93 ATCAATATCACTAACGTCACCGTCTTGGACAATCCAGCGCCATTCGTGAATCCATTCCAG 152
||||| ||||| |||||| | || ||| | ||||| || || || || | || || |||
Sbjct 256 ATCAAAATCACCAACGTCGCTGTATTGCATAATCCTGCTCCTTTTGTTAGCCCTTTTCAG 315
Query 153 TTCGAGATCTCTTACGAATGCTTGACTTCTCTCAAAGACGATTTGGAATGGAAGCTTATC 212
|||||||| |||||||| || |||| ||||||||||||||||||||||||||||||||||
Sbjct 316 TTCGAGATTTCTTACGAGTGTTTGAATTCTCTCAAAGACGATTTGGAATGGAAGCTTATC 375
Query 213 TACGTAGGATCAGCTGAAGATGAAACCTATGATCAAGTTTTGGAAAGTGTTCTTGTTGGT 272
|| ||||| ||||| |||||||| || ||||||||| || | || ||||| ||||| ||
Sbjct 376 TATGTAGGCTCAGCAGAAGATGAGACTTATGATCAACTTCTAGAGAGTGTGCTTGTAGGG 435
Query 273 CCTGTTAACGTTGGGAATTACCGATTTGTGTTACAGGCTGACTC-TCCAGATCCGTTAAA 331
|||||||| ||||| || ||||| ||||| || |||||||| || ||| ||||| | |||
Sbjct 436 CCTGTTAATGTTGGCAACTACCGCTTTGTATTTCAGGCTGA-TCCTCCGGATCCATCAAA 494
Query 332 GATTC-GTGAGGAAGATATTATTGGTGTAACTGTGCTATTGTTGACTTGCTCATACATGG 390
||||| | |||||||| || || ||||| ||||||||||||||||| || || |||||||
Sbjct 495 GATTCAG-GAGGAAGACATCATCGGTGTTACTGTGCTATTGTTGACATGTTCTTACATGG 553
Query 391 ATCAAGAGTTTATT-AGAGTTGGCTATTATGTCAACAATGACTATGATGATGAACAACTC 449
||||||||| || |||||||| ||||| || |||||||| ||||| ||||| ||||||
Sbjct 554 GTCAAGAGTTC-TTGAGAGTTGGATATTACGTGAACAATGATTATGAGGATGAGCAACTC 612
Query 450 AGGGAAGAGCCTCCTACCAAGGTTTTGATTAATAAAGTCCAAAGGAACATACTCACGGAC 509
| |||||||||||| || |||||||||||| ||||||| || ||||||||||| | |||
Sbjct 613 AAGGAAGAGCCTCCAACTAAGGTTTTGATTGATAAAGTTCAGAGGAACATACTTTCCGAC 672
Query 510 AAACCTCGAGTCACTAAGTTCCCTGTCA-ACTTTCATCCTGCGGATGAGCAGGCTG 564
|||||| |||| ||||| || ||| | | | |||||||| | || |||||| |||
Sbjct 673 AAACCTAGAGTTACTAAATTTCCTAT-AGATTTTCATCCAGAAGAAGAGCAGACTG 727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35415073635
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5