BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494167 Length=742 Score E Sequences producing significant alignments: (Bits) Value AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1066 0.0 AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 355 3e-97 AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 278 7e-74 > AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484 REVERSE LENGTH=743 Length=743 Score = 1066 bits (577), Expect = 0.0 Identities = 688/743 (93%), Gaps = 2/743 (0%) Strand=Plus/Plus Query 1 ACAGAAATATACTGCCGCAATTAGGCGTTTGACATATGGTCTTGCAAACGATGCGATGGA 60 |||||||| |||| |||||||||||||| || ||||||||||||||||| ||| |||| | Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60 Query 61 CGAATACCTCCGCATGGGCGCAACCACTGTGAGCCAATCACTAGAGAATTTTGTAGATGG 120 || ||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||| Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120 Query 121 CATAATAAATTTATTCCAAGACGAATATTTGAGGTGGCCAACACGTGAGGATCTAGAACG 180 ||||||||||||||||||||| |||||||||||| | || |||||||||||||||||||| Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180 Query 181 GTTACTTCATTCTGGAAAGGAACGCGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240 ||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240 Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACGCGGACATGG 300 ||||| ||||||||| |||||| |||| ||||||||||| |||||||||||||||||||| Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300 Query 301 AAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGAGTTGGCATGCttt 360 |||| |||||||| |||||||||||||| ||| |||||| |||||| ||| |||||||| Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360 Query 361 ttttGGGGCTCCAGGTACGTGTAATGATA-AAATGTTCTTGACCGCTCACCGGTGTTTGA 419 |||||||| || || |||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 361 TTTTGGGGTTCAAG-TACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419 Query 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAGGTACGAAGTCAATGGACATCAATACAA 479 |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479 Query 480 AATTGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 539 ||| ||||||||||||||| ||| ||||||||||||||||| |||||||||||||||||| Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539 Query 540 TACCCGCCCACAAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAACAGTGAGAAA 599 |||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599 Query 600 AGATGTCGAGCGTGCTTTAGGAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 659 ||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||| ||| Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659 Query 660 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 719 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719 Query 720 TATGATTGTAGAAGATGAACGAG 742 ||||||| |||||||| |||||| Sbjct 720 TATGATTATAGAAGATAAACGAG 742 > AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475 REVERSE LENGTH=3840 Length=3840 Score = 355 bits (192), Expect = 3e-97 Identities = 440/556 (79%), Gaps = 31/556 (6%) Strand=Plus/Plus Query 203 CGCGGA-TTTCCGGGAATGGTAGGAAGCATTGACTGTATGCATTGGGAGTGGAAGAATTG 261 |||||| |||| ||| ||| | |||||||| ||||||||||||||||||||||||||||| Sbjct 546 CGCGGATTTTCAGGG-ATGATTGGAAGCATCGACTGTATGCATTGGGAGTGGAAGAATTG 604 Query 262 TCCTACGGCTTGGAAAGGACAGTATTCACGCGGA-CATGGAAAACCCACTATTGTTTTAG 320 || || |||||||||| |||||| | || || | ||||||||| ||||||||||||| Sbjct 605 CCCCACCTCTTGGAAAGGCCAGTATACGCGAGGCTC-TGGAAAACCAACTATTGTTTTAG 663 Query 321 AGGCCGTGGCATCACAAGATTTATGGAGT-TGGCATGCtttttttGGGGCTCCAGGTACG 379 |||| || |||||||||||| | |||| | || || || |||||||| ||| |||||| Sbjct 664 AGGCAGTCGCATCACAAGATCTCTGGA-TATGACACGCGTTTTTTGGACCTCTAGGTACC 722 Query 380 TGTAAT-GATAA-AATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCG 437 | ||| |||| ||| ||||||| || ||||| || |||||||| || ||| ||||||| Sbjct 723 T-TAAACGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCG 781 Query 438 AGCTCCACGACTCAG-GT-ACGAAGTCAATGGAC-ATCAATACAAAATTGG-TTATTACC 493 ||||||| | | | || | || ||||| |||| | | || || |||| ||| || | Sbjct 782 AGCTCCAA-A-TGTGCGTTATGAGGTCAACGGACGAG-AGTATAAT-TTGGCTTACTATC 837 Query 494 TCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAATTACC-CGCCCACAA 552 |||||||||||||||| ||||| ||||| || || || ||||| ||| | | |||||| Sbjct 838 TCACAGATGGTATATAACCGAAATGGGCGACTTTTATACAATCTATT-CGACTTCCACAA 896 Query 553 GGACCGAAAG-CATCATTATTTGC-T-AGTTGTCAAGAAACAGTGAGAAAAGATGTCGAG 609 || | |||| |||| |||||||| | | | ||||||| | || | |||||||||||| Sbjct 897 GGTC-GAAAATCATCTTTATTTGCATCA-TA-TCAAGAAGCCGTTCGTAAAGATGTCGAG 953 Query 610 CGTGC-TTTAGGAGTCTTGCAGGCTCGGTTTG-CTATTATTCGAAACCCAGGTCTGT-TT 666 ||||| ||| ||||| ||| | ||||||||| | |||||| |||||||| ||| | || Sbjct 954 CGTGCATTT-GGAGTATTGTAAGCTCGGTTTCAC-ATTATTAAAAACCCAGCTCT-TATT 1010 Query 667 TGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATT 726 |||||||| || ||| || || || ||| | ||||||||||||||||||||||||||| Sbjct 1011 TGGGATAAGGAAAAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATT 1070 Query 727 GTAGAAGATGAACGAG 742 || ||||| ||||||| Sbjct 1071 GTTGAAGACGAACGAG 1086 > AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015 REVERSE LENGTH=911 Length=911 Score = 278 bits (150), Expect = 7e-74 Identities = 389/498 (78%), Gaps = 42/498 (8%) Strand=Plus/Plus Query 270 CTTGGAAAGGACAGTATTCACGCG-GAC-ATGGAAAACCCACTATTGTTTTAGAGGCCGT 327 |||||||||| ||||| | ||||| | | ||||||||| || |||||||||||||| || Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284 Query 328 GGCATCACAAGATTTATGGAGT-TGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AA 384 |||||||||||| | |||| | ||||| || ||||||||| |||||||||| | | || Sbjct 285 CGCATCACAAGATCTCTGGA-TATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAA 342 Query 385 TGATA-AAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCTCC 443 |||| ||| ||||||| || ||||| || |||||||| || ||| ||||||||||||| Sbjct 343 CGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCC 402 Query 444 ACGACTCAG-G-TACGAA-GTCAATGGACATCA-A-TACA--A-AA-TTGG-TTATTACC 493 | | | | | ||| || ||||| | || || | | | | || |||| ||| || | Sbjct 403 A--AATTTGCGTTAC-AAGGTCAA-CGTCAACAGACGAGAGTATAATTTGGCTTACTATC 458 Query 494 TCACAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC-CCGCCCACA 551 |||||||||||||||||||||| | || | || || |||||||| ||| | | ||||| Sbjct 459 TCACAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACTTCCACA 516 Query 552 AGGACCG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAACAGTGAGAAAAGATGTCGA 608 ||| || ||| |||| |||||||| | | | ||||||||| || | ||||||||||| Sbjct 517 AGG-TCGAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGA 573 Query 609 GCGTGC-TTTAGGAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-T 665 |||||| ||| ||||| ||||| ||||||||| | |||||| ||||||| ||| | | Sbjct 574 GCGTGCATTT-GGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TAT 630 Query 666 TTGGGATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGA 724 ||||||||| || ||| || || || ||| || |||||||||||||||||||||||| Sbjct 631 TTGGGATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGA 689 Query 725 TTGTAGAAGATGAACGAG 742 |||| ||||| ||||||| Sbjct 690 TTGTTGAAGACGAACGAG 707 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 36017883399 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5