BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494167
Length=742
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06550.1 | Symbols: | transposable element gene | chr2:2602... 1066 0.0
AT4G01975.1 | Symbols: | transposable element gene | chr4:8586... 355 3e-97
AT5G28888.1 | Symbols: | transposable element gene | chr5:1090... 278 7e-74
> AT2G06550.1 | Symbols: | transposable element gene | chr2:2602742-2603484
REVERSE LENGTH=743
Length=743
Score = 1066 bits (577), Expect = 0.0
Identities = 688/743 (93%), Gaps = 2/743 (0%)
Strand=Plus/Plus
Query 1 ACAGAAATATACTGCCGCAATTAGGCGTTTGACATATGGTCTTGCAAACGATGCGATGGA 60
|||||||| |||| |||||||||||||| || ||||||||||||||||| ||| |||| |
Sbjct 1 ACAGAAATGTACTACCGCAATTAGGCGTCTGGCATATGGTCTTGCAAACAATGTGATGAA 60
Query 61 CGAATACCTCCGCATGGGCGCAACCACTGTGAGCCAATCACTAGAGAATTTTGTAGATGG 120
|| ||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||
Sbjct 61 CGCATACCTCCGCATGGGCGCAACCACTATGAGTCAAGCACTAGAGAATTTTGTAGATGG 120
Query 121 CATAATAAATTTATTCCAAGACGAATATTTGAGGTGGCCAACACGTGAGGATCTAGAACG 180
||||||||||||||||||||| |||||||||||| | || ||||||||||||||||||||
Sbjct 121 CATAATAAATTTATTCCAAGATGAATATTTGAGGCGACCTACACGTGAGGATCTAGAACG 180
Query 181 GTTACTTCATTCTGGAAAGGAACGCGGATTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 181 GTTACTTCATTTTGGAAAAGAACGCGGTTTTCCGGGAATGGTAGGAAGCATTGACTGTAT 240
Query 241 GCATTGGGAGTGGAAGAATTGTCCTACGGCTTGGAAAGGACAGTATTCACGCGGACATGG 300
||||| ||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||
Sbjct 241 GCATTAGGAGTGGAATAATTGTACTACAGCTTGGAAAGGGCAGTATTCACGCGGACATGG 300
Query 301 AAAACCCACTATTGTTTTAGAGGCCGTGGCATCACAAGATTTATGGAGTTGGCATGCttt 360
|||| |||||||| |||||||||||||| ||| |||||| |||||| ||| ||||||||
Sbjct 301 AAAATCCACTATTATTTTAGAGGCCGTGACATTTCAAGATCTATGGATTTGACATGCTTT 360
Query 361 ttttGGGGCTCCAGGTACGTGTAATGATA-AAATGTTCTTGACCGCTCACCGGTGTTTGA 419
|||||||| || || |||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 361 TTTTGGGGTTCAAG-TACGTGTAATGATATAAATGTTCTTGACCGCTCACCGGTGGTTGA 419
Query 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAGGTACGAAGTCAATGGACATCAATACAA 479
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||
Sbjct 420 TGATATATTAGAAGGTCGAGCTCCACGACTCAAGTACGAAATCAATGGACATCAAAACAA 479
Query 480 AATTGGTTATTACCTCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAAT 539
||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 480 AATGGGTTATTACCTCACATATGATATATATCCGAAGTGGGGAACATTCATCCAATCAAT 539
Query 540 TACCCGCCCACAAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAACAGTGAGAAA 599
|||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 540 TACCCGTCCACGAGGACCGAAAGCATCATTATTTGCTAGTTGTCAAGAAGCAGTGAGAAA 599
Query 600 AGATGTCGAGCGTGCTTTAGGAGTCTTGCAGGCTCGGTTTGCTATTATTCGAAACCCAGG 659
||||||||| |||||||| |||||||||||||||| ||||||||||||| |||||| |||
Sbjct 600 AGATGTCGAACGTGCTTTTGGAGTCTTGCAGGCTCAGTTTGCTATTATTTGAAACCTAGG 659
Query 660 TCTGTTTTGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAA 719
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TCTGTTTTGGGATAAAGAGGGAATGGGCAAAATAATGAGAGCATGTATCATATTGCACAA 719
Query 720 TATGATTGTAGAAGATGAACGAG 742
||||||| |||||||| ||||||
Sbjct 720 TATGATTATAGAAGATAAACGAG 742
> AT4G01975.1 | Symbols: | transposable element gene | chr4:858636-862475
REVERSE LENGTH=3840
Length=3840
Score = 355 bits (192), Expect = 3e-97
Identities = 440/556 (79%), Gaps = 31/556 (6%)
Strand=Plus/Plus
Query 203 CGCGGA-TTTCCGGGAATGGTAGGAAGCATTGACTGTATGCATTGGGAGTGGAAGAATTG 261
|||||| |||| ||| ||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 546 CGCGGATTTTCAGGG-ATGATTGGAAGCATCGACTGTATGCATTGGGAGTGGAAGAATTG 604
Query 262 TCCTACGGCTTGGAAAGGACAGTATTCACGCGGA-CATGGAAAACCCACTATTGTTTTAG 320
|| || |||||||||| |||||| | || || | ||||||||| |||||||||||||
Sbjct 605 CCCCACCTCTTGGAAAGGCCAGTATACGCGAGGCTC-TGGAAAACCAACTATTGTTTTAG 663
Query 321 AGGCCGTGGCATCACAAGATTTATGGAGT-TGGCATGCtttttttGGGGCTCCAGGTACG 379
|||| || |||||||||||| | |||| | || || || |||||||| ||| ||||||
Sbjct 664 AGGCAGTCGCATCACAAGATCTCTGGA-TATGACACGCGTTTTTTGGACCTCTAGGTACC 722
Query 380 TGTAAT-GATAA-AATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCG 437
| ||| |||| ||| ||||||| || ||||| || |||||||| || ||| |||||||
Sbjct 723 T-TAAACGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCG 781
Query 438 AGCTCCACGACTCAG-GT-ACGAAGTCAATGGAC-ATCAATACAAAATTGG-TTATTACC 493
||||||| | | | || | || ||||| |||| | | || || |||| ||| || |
Sbjct 782 AGCTCCAA-A-TGTGCGTTATGAGGTCAACGGACGAG-AGTATAAT-TTGGCTTACTATC 837
Query 494 TCACAGATGGTATATATCCGAAGTGGGCAACATTCATCCAATCAATTACC-CGCCCACAA 552
|||||||||||||||| ||||| ||||| || || || ||||| ||| | | ||||||
Sbjct 838 TCACAGATGGTATATAACCGAAATGGGCGACTTTTATACAATCTATT-CGACTTCCACAA 896
Query 553 GGACCGAAAG-CATCATTATTTGC-T-AGTTGTCAAGAAACAGTGAGAAAAGATGTCGAG 609
|| | |||| |||| |||||||| | | | ||||||| | || | ||||||||||||
Sbjct 897 GGTC-GAAAATCATCTTTATTTGCATCA-TA-TCAAGAAGCCGTTCGTAAAGATGTCGAG 953
Query 610 CGTGC-TTTAGGAGTCTTGCAGGCTCGGTTTG-CTATTATTCGAAACCCAGGTCTGT-TT 666
||||| ||| ||||| ||| | ||||||||| | |||||| |||||||| ||| | ||
Sbjct 954 CGTGCATTT-GGAGTATTGTAAGCTCGGTTTCAC-ATTATTAAAAACCCAGCTCT-TATT 1010
Query 667 TGGGATAAAGAGCGAATGGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGATT 726
|||||||| || ||| || || || ||| | |||||||||||||||||||||||||||
Sbjct 1011 TGGGATAAGGAAAAAATAGGAAATATTATGCGGGCATGTATCATATTGCACAATATGATT 1070
Query 727 GTAGAAGATGAACGAG 742
|| ||||| |||||||
Sbjct 1071 GTTGAAGACGAACGAG 1086
> AT5G28888.1 | Symbols: | transposable element gene | chr5:10902105-10903015
REVERSE LENGTH=911
Length=911
Score = 278 bits (150), Expect = 7e-74
Identities = 389/498 (78%), Gaps = 42/498 (8%)
Strand=Plus/Plus
Query 270 CTTGGAAAGGACAGTATTCACGCG-GAC-ATGGAAAACCCACTATTGTTTTAGAGGCCGT 327
|||||||||| ||||| | ||||| | | ||||||||| || |||||||||||||| ||
Sbjct 227 CTTGGAAAGGCCAGTA-T-ACGCGAGGCTCTGGAAAACCAACCATTGTTTTAGAGGCAGT 284
Query 328 GGCATCACAAGATTTATGGAGT-TGGCATGC-tttttttGGGGCTCCAGGTACGTGT-AA 384
|||||||||||| | |||| | ||||| || ||||||||| |||||||||| | | ||
Sbjct 285 CGCATCACAAGATCTCTGGA-TATGGCACGCATTTTTTTGGACCTCCAGGTACCT-TAAA 342
Query 385 TGATA-AAATGTTCTTGACCGCTCACCGGTGTTTGATGATATATTAGAAGGTCGAGCTCC 443
|||| ||| ||||||| || ||||| || |||||||| || ||| |||||||||||||
Sbjct 343 CGATATCAATATTCTTGATCGATCACCAGTTTTTGATGAAATTTTACAAGGTCGAGCTCC 402
Query 444 ACGACTCAG-G-TACGAA-GTCAATGGACATCA-A-TACA--A-AA-TTGG-TTATTACC 493
| | | | | ||| || ||||| | || || | | | | || |||| ||| || |
Sbjct 403 A--AATTTGCGTTAC-AAGGTCAA-CGTCAACAGACGAGAGTATAATTTGGCTTACTATC 458
Query 494 TCACAGATGGTATATATCCGAAGTGGGCA-ACATTCATCCAATCAATTAC-CCGCCCACA 551
|||||||||||||||||||||| | || | || || |||||||| ||| | | |||||
Sbjct 459 TCACAGATGGTATATATCCGAAAT-GGAAGACTTTTATCCAATCTATT-CGACTTCCACA 516
Query 552 AGGACCG-AAAGCATCATTATTTGCTAGT--TGTCAAGAAACAGTGAGAAAAGATGTCGA 608
||| || ||| |||| |||||||| | | | ||||||||| || | |||||||||||
Sbjct 517 AGG-TCGAAAATCATCTTTATTTGC-A-TCATATCAAGAAACCGTCCGTAAAGATGTCGA 573
Query 609 GCGTGC-TTTAGGAGTCTTGCAGGCTCGGTTTGC-TATTATTCGAAACCCAGGTCTGT-T 665
|||||| ||| ||||| ||||| ||||||||| | |||||| ||||||| ||| | |
Sbjct 574 GCGTGCATTT-GGAGTATTGCAAGCTCGGTTT-CACATTATTAAAAACCCAACTCT-TAT 630
Query 666 TTGGGATAAAGAGCGAAT-GGGCAAGATAATGAGAGCATGTATCATATTGCACAATATGA 724
||||||||| || ||| || || || ||| || ||||||||||||||||||||||||
Sbjct 631 TTGGGATAAGGAAAAAATATGG-AATATTATGCGAACATGTATCATATTGCACAATATGA 689
Query 725 TTGTAGAAGATGAACGAG 742
|||| ||||| |||||||
Sbjct 690 TTGTTGAAGACGAACGAG 707
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36017883399
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5