BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494168
Length=458
Score E
Sequences producing significant alignments: (Bits) Value
AT2G06555.1 | Symbols: | unknown protein; Has 30201 Blast hits... 377 4e-104
> AT2G06555.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:2604148-2604927
REVERSE LENGTH=622
Length=622
Score = 377 bits (204), Expect = 4e-104
Identities = 381/460 (83%), Gaps = 37/460 (8%)
Strand=Plus/Plus
Query 1 TGTTATGAGTTTGCCTCTCGGACTCCTCACAGTGGAGAGAATGAAGATGATATTATCGTG 60
|||||||||||||||| ||||||||||| ||| ||||||| | || |||| ||| |||||
Sbjct 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151
Query 61 CTGGCCTACAAGCTTTACCATCAAGATCaaaaaaaCAAATTCAGTCTTGAGCATGTTTGG 120
|| ||||||||||||||||||||||||| |||| ||| || || ||| || |
Sbjct 152 CTTGCCTACAAGCTTTACCATCAAGATC---AAAA-AAA--CA-AATT---CATCCTT-G 200
Query 121 AGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180
|| || | || || ||| | ||| | | || |||| || ||||||||
Sbjct 201 AG------CATGTTTG--GAG-AATCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245
Query 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTTCAAAGGCCTATAGGTGTGAAG 240
||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||
Sbjct 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305
Query 241 GCAACCAAGGCTTTAGCCAAGTCCAAAGTGAAAGAGAAGGATTTGGCTGCCAAAGAGAGA 300
||| ||||||||| ||||||||| ||| | |||||||||||| ||| ||||||||||
Sbjct 306 GCAGCCAAGGCTTCAGCCAAGTC-AAA---A--GAGAAGGATTTGACTGTCAAAGAGAGA 359
Query 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGT- 358
|||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| |
Sbjct 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTTA-ATAGGTCTAATGGATTGAGTGA-TA 417
Query 359 TGGAAATTCAACTTAAGAACTCTCTTATCCAAGAGTATCTGTCTGGAAGCAATGTGTTTG 418
||||||||||| |||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 418 TGGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTG 477
Query 419 TTTTTGAGAATGAATATTCTGGACCTCCTCTTGGAAGCTA 458
||| ||||||||||||||||| || |||||||||||||||
Sbjct 478 TTTCTGAGAATGAATATTCTG-ACTTCCTCTTGGAAGCTA 516
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21816203066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5