BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg494168 Length=458 Score E Sequences producing significant alignments: (Bits) Value AT2G06555.1 | Symbols: | unknown protein; Has 30201 Blast hits... 377 4e-104 > AT2G06555.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr2:2604148-2604927 REVERSE LENGTH=622 Length=622 Score = 377 bits (204), Expect = 4e-104 Identities = 381/460 (83%), Gaps = 37/460 (8%) Strand=Plus/Plus Query 1 TGTTATGAGTTTGCCTCTCGGACTCCTCACAGTGGAGAGAATGAAGATGATATTATCGTG 60 |||||||||||||||| ||||||||||| ||| ||||||| | || |||| ||| ||||| Sbjct 92 TGTTATGAGTTTGCCTGTCGGACTCCTCGCAGGGGAGAGACTCAATATGACATTCTCGTG 151 Query 61 CTGGCCTACAAGCTTTACCATCAAGATCaaaaaaaCAAATTCAGTCTTGAGCATGTTTGG 120 || ||||||||||||||||||||||||| |||| ||| || || ||| || | Sbjct 152 CTTGCCTACAAGCTTTACCATCAAGATC---AAAA-AAA--CA-AATT---CATCCTT-G 200 Query 121 AGAATCCTCAAGACTGATCAGAAATGGTGCAATTGGTGTGAGACCAAACTTCCTGCCAAG 180 || || | || || ||| | ||| | | || |||| || |||||||| Sbjct 201 AG------CATGTTTG--GAG-AATCCT-CAA---GACT--GATCAAAGTTTCTGCCAAG 245 Query 181 AAGAAAGCTAAACTTTCATCTGTAGAAGAAGAGAGTCTTCAAAGGCCTATAGGTGTGAAG 240 ||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||| Sbjct 246 AAGAAAGCTAAACTTTCATCTGTAGAACAAGAAAGTCTTAAAAGGCCTATAGGTGTGAAG 305 Query 241 GCAACCAAGGCTTTAGCCAAGTCCAAAGTGAAAGAGAAGGATTTGGCTGCCAAAGAGAGA 300 ||| ||||||||| ||||||||| ||| | |||||||||||| ||| |||||||||| Sbjct 306 GCAGCCAAGGCTTCAGCCAAGTC-AAA---A--GAGAAGGATTTGACTGTCAAAGAGAGA 359 Query 301 CTCTCCAAGCAGAAGCTACTTGACAGCCTTCTTGGA-AGGTCTGATGGATTGAGTGAGT- 358 |||||||| || ||||||||||||||||| ||| | |||||| ||||||||||||| | Sbjct 360 CTCTCCAAACATAAGCTACTTGACAGCCTACTTA-ATAGGTCTAATGGATTGAGTGA-TA 417 Query 359 TGGAAATTCAACTTAAGAACTCTCTTATCCAAGAGTATCTGTCTGGAAGCAATGTGTTTG 418 ||||||||||| |||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 418 TGGAAATTCAAATTAAAAATTCTCTTATCCAAGAGTATCTTTCTGGAAGCAATGTGTTTG 477 Query 419 TTTTTGAGAATGAATATTCTGGACCTCCTCTTGGAAGCTA 458 ||| ||||||||||||||||| || ||||||||||||||| Sbjct 478 TTTCTGAGAATGAATATTCTG-ACTTCCTCTTGGAAGCTA 516 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 21816203066 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5