BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494169
Length=1099
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38100.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1537 0.0
AT5G38096.1 | Symbols: | Pseudogene of AT5G38100; methyltransf... 832 0.0
> AT5G38100.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:15199489-15201197
REVERSE LENGTH=1404
Length=1404
Score = 1537 bits (832), Expect = 0.0
Identities = 1016/1105 (92%), Gaps = 12/1105 (1%)
Strand=Plus/Plus
Query 1 TCACAAAAACGGAGCAATGTCAACATCATCTCACTTGTACCCGATGAGCAGCGGTGACGA 60
||| ||| ||| ||||||||||||||| |||||| |||||||||||||||||||| ||||
Sbjct 14 TCATAAATACGAAGCAATGTCAACATCTTCTCACATGTACCCGATGAGCAGCGGTCACGA 73
Query 61 TCAACACAGTTACATCCATAACTCTTCATACCAGAAAGTAGCTATAAGTGGCGCTGAAGA 120
||||||||||||||||||||| ||||||||||| |||| |||||||||| |||||| |||
Sbjct 74 TCAACACAGTTACATCCATAATTCTTCATACCAAAAAGCAGCTATAAGTAGCGCTGTAGA 133
Query 121 AAAGACAAGACGATGCATCTTGGAAAAGCTCGACCTCCAACTGAGTTCTGATTTTAGTAC 180
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||
Sbjct 134 AAAGACAAGACGATGCATCTTTGAAAAGCTCGACCTCCAACTAAGTTCTGATTTTGGTAC 193
Query 181 TTTTAGAATTGCAGATTTTGGTTGTTCTACTGGACCTAACACGTTTCATGTTGTTCAAAG 240
|||||||||||| |||||||| ||||||| |||||| |||||||| ||||||| ||||||
Sbjct 194 TTTTAGAATTGCGGATTTTGGATGTTCTATTGGACCGAACACGTTCCATGTTGCTCAAAG 253
Query 241 TATCATTGATACGGTCAAATCCAGACACTTTAAAGAAAACAACGAACATAGCCTTGTGCC 300
|||||||||||| || ||||||| || ||| |||||| | |||| |||||||||||||
Sbjct 254 TATCATTGATACAGTGAAATCCAAACGCTTGGAAGAAAGTACCGAAAATAGCCTTGTGCC 313
Query 301 TCTCGAGTTCCAAGTTTTCTTCAACGATC-ACACCACCAATGACTTCAACACACTCTTCA 359
|| |||||||||||||||||||| |||| || ||||||||||||||||||||||||| |
Sbjct 314 ACTAGAGTTCCAAGTTTTCTTCAATGATCAAC-CCACCAATGACTTCAACACACTCTTTA 372
Query 360 AAACCCAACCTCCTTCCCCGGAACGCGAATATTTCTCTGTCGGAGTTCCAGGCTCTTTCT 419
||||||||||| ||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 373 GAACCCAACCTCTTTCTCCAGAACGCGAATATTTCTCAGTCGGAGTTCCAGGCTCTTTCT 432
Query 420 ATGGTCGGCTGTTACCAAGAAACAGCATCCACATTGGACACACTTCATACACGATTCACT 479
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct 433 ATGGTCGGGTGTTACCAAGAAACAGCATCCACATCGGACACACTTCATACACGACTCACT 492
Query 480 GGCTTTCCAAAGTTCCTGA-ACACGTATGTGACAAGAAATCTATGGCTTGGAACAAAAAT 538
|||| || ||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 493 GGCTCTCGAAAGTTCCTGATA-ACGTATGTGACAAGAAATCTATGGCTTGGAACAAAAAT 551
Query 539 TACAGTCAATGTAATAATTTGTTGGAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATA 598
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 552 TACATTCAATGTAATAATTTGTTGGAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATA 611
Query 599 GAAGACATGGACGCTTTT-CTTGATGCTAGAG-GAGAAGAACTTGTGCCC-GGAGGACTG 655
|||||||||| | |||| ||||||||||||| | || |||||||| ||| ||||||||
Sbjct 612 AAAGACATGGA-GATTTTCCTTGATGCTAGAGCG-GAGGAACTTGT-CCCTGGAGGACTA 668
Query 656 ATGACTGTAATAGGAGAATGTTTGCCTGATGGTGTGTCCTTGTATGAGACATGGCAGGGT 715
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 669 ATGATTGTAATAGGAGAATGTTTGCCTGATGGTGTGTCCTTGTATGAGACATGGCAGGGT 728
Query 716 TTTGTGATGGACACCGTCGGTGATTGTCTTATGGATATGGCCAAATCGGGAATTACGAGC 775
| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 729 TATGTGATGGACACCATCGGTGATTGTCTTATGGATATGGCTAAATCGGGAATAACAAGC 788
Query 776 GAGGAAAAGATCGATGTGTTTAGTTTGCCTGTGTATTTTCCTCAATTTAGTGAATTGAAG 835
||||||||||||||| | ||||||||||| || ||||||||||||||||||||||| |||
Sbjct 789 GAGGAAAAGATCGATTTATTTAGTTTGCCAGTATATTTTCCTCAATTTAGTGAATTAAAG 848
Query 836 GGAGAGATTGAGAGAAATGGAAGCTTTACAATTGAGCTGATGGAGGCCACAAGCCATCCA 895
||||||||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||||
Sbjct 849 GGAGAGATTGAGAAAAATGGAAGCTTTACGATTGAGCTGATGGAGACCACAAGTCATCCA 908
Query 896 TTGGAGGGTATGCCATTAACCAACGAGTTCATCATTTCCACGTTTCGAGCTTTTCTCACT 955
|||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 909 TTGGAGGGTAAGCCATTAACCAACGACTTCATCACTTCCACGTTTCGAGCTTTTCTCACT 968
Query 956 ACAATCATAGAAAAACATTTTGGTGATGGTGTGGTCGATGAGCTATTCGATCGACTTGCT 1015
||||||||||||||||||||||| || |||||||| |||||||||||| |||||||||||
Sbjct 969 ACAATCATAGAAAAACATTTTGGAGACGGTGTGGTTGATGAGCTATTCTATCGACTTGCT 1028
Query 1016 AAAAAACTGTACAAGCACCCAATTGATTTTGAAATGCGGAAGAAA-CAAGTTGTGTATTA 1074
|||||||| | ||| |||||||||||||||||||||||||| ||| ||||| |||||||
Sbjct 1029 AAAAAACTCTCCAATCACCCAATTGATTTTGAAATGCGGAA-AAAGCAAGTGGTGTATTG 1087
Query 1075 TATCGTACTTAAACGAAAATAAATA 1099
||| |||||||||||||||||||||
Sbjct 1088 TATAGTACTTAAACGAAAATAAATA 1112
> AT5G38096.1 | Symbols: | Pseudogene of AT5G38100; methyltransferase-related
protein | chr5:15198468-15204265 REVERSE LENGTH=914
Length=914
Score = 832 bits (450), Expect = 0.0
Identities = 712/838 (85%), Gaps = 20/838 (2%)
Strand=Plus/Plus
Query 265 ACACTTTAAAGAAAACAACGAACATAGCCTTGTGCCTCTCGAGTTCCAAGTTTTCTTCAA 324
|||||| || |||||||||||| |||||||| |||||||||| || ||||||||||||||
Sbjct 87 ACACTTGAAGGAAAACAACGAAAATAGCCTTTTGCCTCTCGAATTTCAAGTTTTCTTCAA 146
Query 325 CGATC-ACACCACCAATGACTTCAACACACTCTTCAAAACCCAACCTCCTTCCCCGGAAC 383
||||| || ||| ||||||||||||||||||||| | |||||| |||||||| ||||||
Sbjct 147 CGATCAAC-CCAACAATGACTTCAACACACTCTTTAGAACCCAGTCTCCTTCCACGGAAC 205
Query 384 GCGAATATTTCTCTGTCGGAGTTCCAGGCTCTTTCTATGGTCG-GCTGTTACCAAGAAAC 442
| ||||||||||| || ||||||||||| || |||||||| || | ||||||||||||||
Sbjct 206 GGGAATATTTCTCGGTTGGAGTTCCAGGGTCCTTCTATGGCCGAG-TGTTACCAAGAAAC 264
Query 443 AGCATCCACATTGGACACACTTCATACACGATTCACTGGCTTTCCAAAGTTCCTGAACAC 502
||||||||||| ||| |||| || ||||| | ||| |||||||| |||||||| || |
Sbjct 265 AGCATCCACATCGGAAACACGTCTTACACAACTCATTGGCTTTCTAAAGTTCCCAAATAT 324
Query 503 GTATGTGACAAGAAATCTATGGCTTGGAACAAAAATTACAGTCAATGTAATAATTTGTTG 562
|||||||||||||||||| ||| ||||||||| |||||| ||| ||||| ||||| ||
Sbjct 325 GTATGTGACAAGAAATCTCCGGCCTGGAACAAACATTACATTCACTGTAACAATTTATTA 384
Query 563 GAAGAAGTTACCAAGGCTTACAAGGTCCAGTTCATAGAAGACATGGACGCTTTTCTTGAT 622
||||| || |||||||||||||| || ||||||||||||||||||| |||||| ||||
Sbjct 385 GAAGATGTGACCAAGGCTTACAAAGTTCAGTTCATAGAAGACATGGGGGCTTTTATTGAC 444
Query 623 GCTAGAG-GAGAAGAACTTGTGCCCGGAGGACTGATGACTGTAATAGGAGAATGTTTGCC 681
||||||| | |||||||||||||| || ||| | |||| | | |||| |||| ||||
Sbjct 445 GCTAGAGCG-GAAGAACTTGTGCCTGGTGGATTAATGATTATTTTAGGTCAATG--TGCC 501
Query 682 TGATGGTGTGTCCTTGTATGAGACATGGCAGGGTTTTGTGATGGACACCGTCGGTGATTG 741
||||| ||| || |||||||||||||||||||| |||| | || ||||||||||||||
Sbjct 502 GGATGGCGTGCCCATGTATGAGACATGGCAGGGTAATGTGTTCGATACCGTCGGTGATTG 561
Query 742 TCTTATGGATATGGCCAAATCGGGAATTACGAGCGAGGAAAAGATCGA-TGTGTTTAGTT 800
||||||||||||||| ||| || | | || ||||||||||||||||| | | || ||||
Sbjct 562 TCTTATGGATATGGCTAAA--GG-AGTAACAAGCGAGGAAAAGATCGAAT-TATTCAGTT 617
Query 801 TGCCTGTGTATTTTCCTCAATTTAGTGAATTGAAGGGAGAGATTGAGAGA-AATGGAAGC 859
||||| ||||||||||||||||||||||| ||| ||||| |||||| | | |||||||||
Sbjct 618 TGCCTATGTATTTTCCTCAATTTAGTGAAGTGAGGGGAGTGATTGA-ACATAATGGAAGC 676
Query 860 TTTACAATTGAGCTGATGGAGGCCACAAGCCATCCATTGGAGGGTATGCCATTAACC-AA 918
|| |||||||||||||||||| | | |||||||||||| || | || |||||||||| ||
Sbjct 677 TTCACAATTGAGCTGATGGAGACTATAAGCCATCCATTAGACGATACGCCATTAACCCAA 736
Query 919 CGAGTTCATCATTTCCACGTTTCGAGCTTTTCTCACTACAATCATAGAAAAACATTTTGG 978
||| || |||| |||||||||||||||||||||||| |||||| | ||||||||||||||
Sbjct 737 CGACTTTATCACTTCCACGTTTCGAGCTTTTCTCACAACAATCGTCGAAAAACATTTTGG 796
Query 979 TGATGGTGTGGTCGATGAGCTATTCGATCGACTTGCTAAAAAACTGTACAA-GCACCCAA 1037
||||||| ||| ||||||||||| ||| ||| ||||| ||||| || | ||||||||
Sbjct 797 AGATGGTGCAGTCAATGAGCTATTCAATCAACTGGCTAAGAAACTC-ACCATGCACCCAA 855
Query 1038 TTGATTTTGAA-ATGCGGAAGAAACAAGTTGTGTATTATATCGTACTTAAACGAAAAT 1094
|||||||| || ||| ||||||||||||| || || ||||||||||||||| ||||||
Sbjct 856 TTGATTTT-AAGATGTGGAAGAAACAAGTGGTATACTATATCGTACTTAAAAGAAAAT 912
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53865184785
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5