BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg494170

Length=831
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G38080.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   329    2e-89


> AT5G38080.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT5G38090.1); 
Has 1807 Blast hits to 1807 proteins in 277 species: Archae 
- 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; 
Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). 
| chr5:15191715-15192645 REVERSE LENGTH=474
Length=474

 Score =  329 bits (178),  Expect = 2e-89
 Identities = 207/221 (94%), Gaps = 2/221 (1%)
 Strand=Plus/Plus

Query  609  CATATGTCACACGTTCGGCTTTTGTAATTTCTTCAACCTCCTCTATTCGGTTTCTCCTCA  668
            ||| |||||||||||||||||||||| |||| || |||||||||||||||||||||||||
Sbjct  222  CATCTGTCACACGTTCGGCTTTTGTATTTTCGTCCACCTCCTCTATTCGGTTTCTCCTCA  281

Query  669  CTTGGCTCTATACTTCGGCCTCCCTTGTTTGCTAGGTTTCGTAGCCGTCATGATTGCACC  728
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  282  CTTGGCTCTATACTTCGGTCTCCCTTGTTTGCTAGGTTTCGTAGCCGTCATGATTGCACC  341

Query  729  AGGTTGTCCATATCTATGGGAAGGCCTATGCAACAAAGTGCAAGAGTTACGAGA-TAAGT  787
            | ||||||| |||| |||| |||||||||||||||||||||||||||||||||| |  ||
Sbjct  342  AAGTTGTCCGTATCAATGGAAAGGCCTATGCAACAAAGTGCAAGAGTTACGAGACTG-GT  400

Query  788  GGAAGTATGTGAAACGACCACAATCCTCGGTTGTTATTGTT  828
            ||||| ||||||| |||||||||||||||||||||||||||
Sbjct  401  GGAAGCATGTGAATCGACCACAATCCTCGGTTGTTATTGTT  441


 Score =  309 bits (167),  Expect = 3e-83
 Identities = 208/227 (92%), Gaps = 6/227 (3%)
 Strand=Plus/Plus

Query  1    ATGACTAATACTAATGTTGCTGCTA-ATAAGCCTAC-TTCTACTATCGAAGATGAATCTT  58
            ||||||||||||||||||||||||| | |||||| | ||||||||| |  ||||||||| 
Sbjct  1    ATGACTAATACTAATGTTGCTGCTACA-AAGCCT-CTTTCTACTATGGTCGATGAATCTC  58

Query  59   CTAGTCTCCTTCGTGCA-TGGTGTATGAACAAGAACCTACAATACAACTTTGCGATGAAC  117
            |||| || || |||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct  59   CTAGCCTTCTCCGTG-ATTGGTGTATGAACAAGAACCTACAATACAACTTTGCGATGAAC  117

Query  118  ATCTTCATGATAATCATCAACATCGAAGCAATCTTGTATATGAGAAACCACGAAATTCAC  177
             || ||||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||
Sbjct  118  TTCGTCATGATAATCATCAACATTGAAGCAATCTTGTCTATCAGAAACCACGAAAATCAC  177

Query  178  GCAATCGAGAATGTCTTAGCATCTAAAGCTTACTTCGTGGGACGCAT  224
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  178  GCAATCGAGAATGTCTTAGCATCTAAAGCTTACTTCGTGGGACGCAT  224



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 40488722482


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5