BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494175
Length=1730
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38030.1 | Symbols: | MATE efflux family protein | chr5:151... 2521 0.0
AT3G26590.1 | Symbols: | MATE efflux family protein | chr3:976... 1831 0.0
AT1G12950.1 | Symbols: RSH2 | root hair specific 2 | chr1:44197... 872 0.0
> AT5G38030.1 | Symbols: | MATE efflux family protein | chr5:15171246-15175457
REVERSE LENGTH=1892
Length=1892
Score = 2521 bits (1365), Expect = 0.0
Identities = 1612/1732 (93%), Gaps = 14/1732 (1%)
Strand=Plus/Plus
Query 2 TTTTCTATATAATTCATGTGTGACTAATCCCAAGATCCTCACTCTTTGGTCTTTAGTCTT 61
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 53 TTTTCTATATAATTCATGTATGACTAATCCCAAGATGCTCACTCTTTGGTCTTTAGTCTT 112
Query 62 TTGACATTCTTTAATCTTTCCATCTCTGTCTCTGTCTCGTCGACATGGAAAAAGACAAAA 121
|| |||| ||||||||||||||||| ||||||| |||||| || |||||| |||||||||
Sbjct 113 TT-ACATGCTTTAATCTTTCCATCTTTGTCTCTATCTCGTGGATATGGAAGAAGACAAAA 171
Query 122 ATCTAACGGAGACCCTTCTATCTGCGGCGGAAGAACGACCT-CATCTTCCTTTCTCATCC 180
||| ||||||||||||||||||||||||||||||| |||| | ||||||||||||||||
Sbjct 172 TTCTTACGGAGACCCTTCTATCTGCGGCGGAAGAACCACCTGC-TCTTCCTTTCTCATCC 230
Query 181 GTAGATGATATTCCTCCGATCACCACCGTTCGTGGCTTCCTCAGGGAGTTTAACGTGGAG 240
|| || |||||||||||||||||||||||| |||||||| ||| |||||| |||||||||
Sbjct 231 GTGGAAGATATTCCTCCGATCACCACCGTTGGTGGCTTCGTCAAGGAGTTCAACGTGGAG 290
Query 241 GTCAAAAAGCTATGGTACTTGGCCGGGCCAGCTATTTTCATGTCGT-TAACTCAGTATTC 299
||||||||||||||||||||||| |||||||| ||||||||||| | |||| || |||||
Sbjct 291 GTCAAAAAGCTATGGTACTTGGCAGGGCCAGCCATTTTCATGTC-TATAACCCAATATTC 349
Query 300 TCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACTATCGCTCTGGCGGCCGT 359
|||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||
Sbjct 350 TCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAGCACCATCGCTCTCGCAGCGGT 409
Query 360 CTCCGTCGAAAACTCGGTCATCGCCGGGTTCTCATTTGGCGTCATGCTTGGAATGGGAAG 419
|||||| ||||||||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 410 CTCCGTTGAAAACTCGGTCATCGCTGGATTCTCATTTGGTGTCATGCTTGGAATGGGAAG 469
Query 420 CGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGT 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 470 CGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGGCGT 529
Query 480 TTACTTGCAACGATCATGGGTGATACTTAACGTGACCGCGATT-TTACTCTCTCTCCTAT 538
||||||||||||||||||||||||||| |||||||||||| || || ||||| || || |
Sbjct 530 TTACTTGCAACGATCATGGGTGATACTAAACGTGACCGCGGTTATT-CTCTCGCTTCTTT 588
Query 539 ACATTTTCGCCGCTCCAATCCTGGCGTTCATCGGCCAGACGCCAGCGATCTCTAGCGCCA 598
|||| ||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||
Sbjct 589 ACATCTTCGCCGCTCCAATCCTCGCGTTCATCGGTCAAACGCCGGCGATCTCTAGCGCCA 648
Query 599 CAGGAATATTTTCCATCTACATGATCCCACAGATCTTTGCTTACGCCGTTAATTACCCAA 658
| |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 649 CGGGAATATTTTCCATCTACATGATCCCTCAGATCTTTGCTTACGCTGTTAATTACCCAA 708
Query 659 CCGCTAAATTCTTGCAATCACAAAGCAAAATCATGGTCATGGCTGCGATATCAGCGGTTG 718
| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 709 CGGCTAAGTTCTTGCAATCACAAAGCAAAATCATGGTGATGGCTGCGATATCAGCGGTTG 768
Query 719 CACTTGTTCTACACGTGCTCTTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGG 778
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 769 CACTTGTTCTACACGTGCTCCTCACGTGGTTTGTCATTGAGGGGCTCCAGTGGGGCACGG 828
Query 779 CGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGTGGTTCATTGTCGTCGCACAGCTCGTGT 838
||||||||||||||||||| ||||| |||||||||||||||||||| || ||||| ||||
Sbjct 829 CGGGTCTAGCCGTCGTGCTCAACGCCTCGTGGTGGTTCATTGTCGTGGCGCAGCTTGTGT 888
Query 839 ACATATTTAGTGGCACATGTGGTGAAGCTTGGTCTGGATTCTCCTGGGAAGCCTTCCATA 898
||||||||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||
Sbjct 889 ACATATTTAGTGGTACATGCGGTGAAGCTTGGTCTGGATTCTCATGGGAAGCTTTTCATA 948
Query 899 ATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTGTTATGCTTTGTTTGGAGGTGT 958
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 949 ATTTGTGGAGTTTCGTCAGATTATCTTTGGCTTCTGCTGTTATGCTCTGTTTGGAGGTAT 1008
Query 959 GGTATCTCATGGCAGTCATACTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAG 1018
||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1009 GGTATCTTATGGCAGTCATATTATTTGCTGGATATTTGAAGAATGCTGAGATCTCCGTAG 1068
Query 1019 CCGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGA 1078
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 CTGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCAATGATTGCTATTGGGATGA 1128
Query 1079 ACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGCAAAGCATCCAAGAACCGCGA 1138
|| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
Sbjct 1129 ACGCAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAGCAAAACATCCAAGAACCGCAA 1188
Query 1139 AATTTTCTCTACTAGTGGCAGTGATAACATCGACACTGCTCGGACTTGCTATATCAATTG 1198
|||| || ||||||||||||||||||||||| ||| || |||||||||||||||||||||
Sbjct 1189 AATTCTCACTACTAGTGGCAGTGATAACATCTACAGTGATCGGACTTGCTATATCAATTG 1248
Query 1199 CTCTACTCATCTTTAGAGATCAATATCCATCGTTTTTTGTGGGAGACGAAGAAGTCATCA 1258
|||||||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 1249 CTCTACTCATCTTTAGAGATAAATATCCATCGTTATTTGTGGGAGACGAAGAAGTTATCA 1308
Query 1259 TTGTTGTTAAAGATCTTACACCAATTCTTACACTCTCCATTGTCATCAACAATGTCCAAC 1318
||||||||||||||||||||||||| || || |||| ||||||||||||||||||||||
Sbjct 1309 TTGTTGTTAAAGATCTTACACCAATACTCGCAGTCTCTATTGTCATCAACAATGTCCAAC 1368
Query 1319 CTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGCCGTGGCGTACGTTAACA 1378
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 1369 CTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGCAAGCAGTTGTGGCATACGTTAACA 1428
Query 1379 TAGTCTGCTATTACTTGTTTGGAATCCCATTTGGTCTATTATTAGGATACAAGCTTAACT 1438
|||| || |||||| |||||||||||||||||||||| ||| |||| |||||||||||||
Sbjct 1429 TAGTATGTTATTACGTGTTTGGAATCCCATTTGGTCTGTTACTAGGCTACAAGCTTAACT 1488
Query 1439 TTGGCGTAATGGGAATTTGGTGCGGAATGTTGACGGGAACCGTGGTACAGACAATAGTCT 1498
|||| ||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1489 TTGGTGTAATGGGAATCTGGTGCGGAATGTTGACAGGAACCGTGGTTCAGACAATAGTCT 1548
Query 1499 TAACATTGATGATCTGCAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGA 1558
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 TAACATGGATGATCTGTAGAACAAATTGGGACACAGAGGCTGCAATGGCTGAGGGTAGGA 1608
Query 1559 TAAGAAAGTGGGGAGGAGAAGGATCAGAGCAACTCTTAAACTAAAAAGACATTTTAAGAA 1618
||||| ||||||||||||||| |||||| |||||||||||||||||||||||| ||||||
Sbjct 1609 TAAGAGAGTGGGGAGGAGAAGTATCAGATCAACTCTTAAACTAAAAAGACATTATAAGAA 1668
Query 1619 GTGGTATTTTGTGTTTTTAGTGTTCATTAACCTCGTGATTTGTATTCATGTTGAACCTTT 1678
||| ||| || || | || || ||||| |||||||||||||||||||| ||| ||||
Sbjct 1669 GTGATATA--GT-TTGT--GTTTT-ATTAATCTCGTGATTTGTATTCATGTCGAATCTTT 1722
Query 1679 TGTTGCATCAAAGTTTGTTTTTGTGTCTTTTTGGTTGTATCATGAGTCTTGT 1730
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1723 -GTTGCATCAAAGTTTGTTTTTGTGTCTTTTTGGTTGTACCATGAGTCTTGT 1773
> AT3G26590.1 | Symbols: | MATE efflux family protein | chr3:9761700-9765315
REVERSE LENGTH=1786
Length=1786
Score = 1831 bits (991), Expect = 0.0
Identities = 1391/1583 (88%), Gaps = 31/1583 (2%)
Strand=Plus/Plus
Query 42 ACTCTTTGGTCTTTAGTCTTTTGACATTCTTTAATCTTTCCATCTCTGTCTCTGTCTCGT 101
|||| |||||| |||||| || ||| | ||||||||| ||||||||| | || ||| |
Sbjct 1 ACTCGTTGGTCCTTAGTC-TTCGACCTCCTTTAATCTCTCCATCTCT-T-TC--TCT--T 53
Query 102 CGACATGGAAAAAGACAAAAATCTAACGGAGACCCTTCT-ATCTGCGGCGGAAGAACGAC 160
| |||| |||||||||| || |||||||||| ||||| | ||||||||||||||||
Sbjct 54 -AAGATGGCAAAAGACAAAGATATAACGGAGACGCTTCTCA-CTGCGGCGGAAGAACGTT 111
Query 161 CTCATCTTCCTTTCTCATCCGTAGATGATATTCCTCCGATCACCACCGTTC-GTGGCTTC 219
|| |||||||||||| |||||| || |||||||||||||||||||||| || ||||||||
Sbjct 112 CTGATCTTCCTTTCTTATCCGTCGACGATATTCCTCCGATCACCACCG-TCGGTGGCTTC 170
Query 220 CTCAGGGAGTTTAACGTGGAGGTCAAAAAGCTATGGTACTTGGCCGGGCCAGCTATTTTC 279
| ||||| || |||||||| |||||||||||||||||||||||| || || ||||||
Sbjct 171 GTTAGGGAATTCAACGTGGAAACCAAAAAGCTATGGTACTTGGCCGGTCCCGCCATTTTC 230
Query 280 ATGT-CGTTAACTCAGTATTCTCTCGGCGCTGCTACTCAGGTCTTCGCCGGACACATCAG 338
| | ||| ||| || ||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 231 ACATCCGTGAAC-CAATATTCTCTCGGCGCTATTACTCAGGTCTTCGCCGGTCACATCAG 289
Query 339 CACTATCGCTCTGGCGGCCGTCTCCGTCGAAAACTCGGTCATCGCCGGGTTCTCATTTGG 398
||| |||||||| || || ||||||||||||||||| ||| | ||||| |||||||| ||
Sbjct 290 CACCATCGCTCTTGCCGCTGTCTCCGTCGAAAACTCCGTCGTTGCCGGCTTCTCATTCGG 349
Query 399 CGTCATGCTTGGAATGGGAAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGG 458
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 350 CATCATGCTTGGAATGGGAAGTGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGG 409
Query 459 GAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTTAACGTGACCGC 518
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 410 AAAATTGTCAATGCTTGGCGTTTACTTGCAACGATCATGGGTGATACTAAACGTGACTGC 469
Query 519 GATTTTACTCTCTCTCCTATACATTTTCGCCGCTCCAATCCTGGCGTTCATCGGCCAGAC 578
|| | ||||||||||| |||||||||||||| || ||||| |||| ||| || || ||
Sbjct 470 TCTTATCCTCTCTCTCCTTTACATTTTCGCCGCCCCTATCCTCGCGTCCATTGGTCAAAC 529
Query 579 GCCAGCGATCTCTAGCGCCACAGGAATATTTTCCATCTACATGATCCCACAGATCTTTGC 638
| | || ||||||||||| | |||||||||||||||||||||||||| || ||||||||
Sbjct 530 GGCGGCAATCTCTAGCGCGGCCGGAATATTTTCCATCTACATGATCCCTCAAATCTTTGC 589
Query 639 TTACGCCGTTAATTACCCAACCGCTAAATTCTTGCAATCACAAAGCAAAATCATGGTCAT 698
|||||| | |||| |||||||||||||| |||||||| |||||||| || ||||||||
Sbjct 590 CTACGCCATCAATTTTCCAACCGCTAAATTTTTGCAATCGCAAAGCAAGATAATGGTCAT 649
Query 699 GGCTGCGATATCAGCGGTTGCACTTGTTCTACACGTG-CTCTTCACGTGGTTTGTCATTG 757
||| | |||||| || |||||||||||| |||||||| ||| ||||||||||||||||||
Sbjct 650 GGCCGTGATATCGGCTGTTGCACTTGTTATACACGTGCCTC-TCACGTGGTTTGTCATTG 708
Query 758 AGGGGCTCCAGTGGGGCACGGCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGTGGTTCA 817
| |||||||||||| | | | ||||||||||| |||||||||||||||||||| ||||
Sbjct 709 TGAAGCTCCAGTGGGGTATGCCAGGTCTAGCCGTAGTGCTTAACGCGTCGTGGTGCTTCA 768
Query 818 TTGTCGTCGCACAGCTCGTGTACATATTTAGTGGCACATGTGGTGAAGCTTGGTCTGGAT 877
||| | | || ||||| ||||||||||||||||| || |||||||| ||||||||||| |
Sbjct 769 TTGACATGGCTCAGCTTGTGTACATATTTAGTGGTACGTGTGGTGAGGCTTGGTCTGGTT 828
Query 878 TCTCCTGGGAAGCCTTCCATAATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTG 937
|||| ||||| || || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 TCTCGTGGGAGGCTTTTCATAATTTGTGGAGTTTCGTTAGATTATCTTTGGCTTCTGCTG 888
Query 938 TTATGCTTTGTTTGGAGGTGTGGTATCTCATGGCAGTCATACTATTTGCTGGATATTTGA 997
||||||| ||||||||||| |||||| | |||||| ||||| ||||||||||||||||||
Sbjct 889 TTATGCTCTGTTTGGAGGTTTGGTATTTTATGGCAATCATATTATTTGCTGGATATTTGA 948
Query 998 AGAATGCTGAGATCTCCGTAGCCGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTG 1057
|||||||||| ||||| ||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 949 AGAATGCTGAAATCTCTGTAGCTGCCCTCTCCATCTGCATGAATATTTTGGGATGGACTG 1008
Query 1058 CAATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAG 1117
| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1009 CTATGATTGCTATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAATTAGGAG 1068
Query 1118 CAAAGCATCCAAGAACCGCGAAATTTTCTCTACTAGTGGCAGTGATAACATCGACACTGC 1177
| || |||||||||||||||||||| || ||||| |||||||||||||||||||| ||
Sbjct 1069 CTAACCATCCAAGAACCGCGAAATTCTCACTACTTGTGGCAGTGATAACATCGACGCTAA 1128
Query 1178 TCGGACTTGC-TA-TATCAATTGCT-CTACTCATCTTTAGAGATCAATATCCATCGTTTT 1234
||||| || | | ||||||| | | ||||||||||||||||||||||||||||| |||
Sbjct 1129 TCGGA-TT-CATTGTATCAAT-GATTCTACTCATCTTTAGAGATCAATATCCATCACTTT 1185
Query 1235 TTGTGGGAGACGAAGAAGTCATCATTGTTGTTAAAGATCTTACACCAATTCTTACACTCT 1294
||||| ||||||| ||||||||||| |||||||||| || |||||||| ||| |||| |
Sbjct 1186 TTGTGAAAGACGAAAAAGTCATCATTCTTGTTAAAGAACTCACACCAATACTTGCACTTT 1245
Query 1295 CCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGGATGGC 1354
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1246 CCATTGTCATCAACAATGTCCAACCTGTCTTATCAGGTGTGGCTGTGGGAGCTGGATGGC 1305
Query 1355 AAGCAGCCGTGGCGTACGTTAACATAGTCTGCTATTACTTGTTTGGAATCCCATTTGGTC 1414
|||||| ||||| ||||||||||| | |||||||||| |||||||||||||||||||||
Sbjct 1306 AAGCAGTGGTGGCCTACGTTAACATCGCCTGCTATTACGTGTTTGGAATCCCATTTGGTC 1365
Query 1415 TATTATTAGGATACAAGCTTAACTTTGGCGTAATGGGAATTTGGTGCGGAATGTTGACGG 1474
||||||| || ||||||||||||| ||| ||||||||||| ||||| |||||||||||||
Sbjct 1366 TATTATTGGGGTACAAGCTTAACTATGGTGTAATGGGAATCTGGTGTGGAATGTTGACGG 1425
Query 1475 GAACCGTGGTACAGACAATAGTCTTAACATTGATGATCTGCAGAACAAATTGGGACACAG 1534
| |||||||| ||||||||||| ||||||| ||||||||||| |||||||||||||||||
Sbjct 1426 GGACCGTGGTTCAGACAATAGTTTTAACATGGATGATCTGCAAAACAAATTGGGACACAG 1485
Query 1535 AGGCTGCAATGGCTGAGGGTAGGATAAGA-AAGTGGGGAGGAGAAGGATCAGA------G 1587
||||| |||||||||||| |||||||||| || ||||||||||||| |||||| |
Sbjct 1486 AGGCTTCAATGGCTGAGGATAGGATAAGAGAA-TGGGGAGGAGAAGTATCAGAAATAAAG 1544
Query 1588 CAACTCTTAAACTAAAAAGACAT 1610
|||||| |||||||||| |||||
Sbjct 1545 CAACTCATAAACTAAAA-GACAT 1566
> AT1G12950.1 | Symbols: RSH2 | root hair specific 2 | chr1:4419770-4422638
FORWARD LENGTH=1824
Length=1824
Score = 872 bits (472), Expect = 0.0
Identities = 1043/1312 (79%), Gaps = 66/1312 (5%)
Strand=Plus/Plus
Query 298 TCTCTCGGCGCTGCT-ACTCAGGTCTTCGCCGGACACATCAGCACTATCGCTCTGGCGGC 356
|||||||| || | | ||||| || ||||||||||| || |||||| | ||||| || ||
Sbjct 338 TCTCTCGGAGCCG-TCACTCAAGTTTTCGCCGGACATATTAGCACTCTTGCTCTTGCCGC 396
Query 357 CGTCTCCGTCGAAAACTCGGTCATCGCCGGGTTCTCATTTGGCGTCATGCTTGGAATGGG 416
||||||| | || ||||| ||||||||||| || |||||||| ||||||||||||||||
Sbjct 397 CGTCTCCATTGAGAACTCCGTCATCGCCGGCTTTTCATTTGGTATCATGCTTGGAATGGG 456
Query 417 AAGCGCGTTAGAAACGCTATGTGGACAAGCGTTTGGAGCAGGGAAATTGTCAATGCTTGG 476
||| ||||| ||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct 457 AAGTGCGTTGGAAACGCTATGCGGACAAGCGTTTGGAGCAGGGAAAGTATCAATGCTTGG 516
Query 477 CGTTTACTTGCAACGATCATGGGTGATACTTAA-CGTGACCGCGATTTTACTCTCTCTCC 535
||||||||| ||||| || ||||| || | ||| ||| ||||| | || || |||||
Sbjct 517 CGTTTACTTACAACGCTCGTGGGTTATTC-TAAGCGTAACCGCTCTCTTCCTTTCTCTAA 575
Query 536 TATACATTTTCGCCGCTCCAATCCTGGCGTTCATCGGCCAGA-CGCCAGCGATCTCTAGC 594
| || || ||||| |||||||||||| | || || ||||| | || | || ||||| |
Sbjct 576 TCTATATCTTCGCGGCTCCAATCCTGACCTTTATAGGCCAAACCG-CTGCAATCTC--G- 631
Query 595 GCCA---CAGGAATATTT-TCCATCTACATGATCCCACAGATCTTTGCTTACGCCGTTAA 650
|||| |||| || ||| ||||| |||||||||||||| |||||||| ||||| | ||
Sbjct 632 GCCATGGCAGGGAT-TTTCTCCATTTACATGATCCCACAAATCTTTGCCTACGCTATCAA 690
Query 651 -TTACCCAACCGCTAAATTCTTGCAATCACAAAGCAAAATCATGGTCATGGCTGCG-ATA 708
|| |||||| || || || ||||||||||||||||| |||||||||||||||| | |||
Sbjct 691 CTT-CCCAACGGCGAAGTTTTTGCAATCACAAAGCAAGATCATGGTCATGGCTG-GAATA 748
Query 709 TCAGCGGT-T-GCACTTGT--TCTACACGTGCTCTTCACGTGGTTTGTCATTG-AGGGGC 763
|| |||| | | ||||| || | | || ||||||||||| | |||| || ||
Sbjct 749 TC--CGGTGTGGTTCTTGTGATCCATA-GT-TTCTTCACGTGGCTAGTCA-TGTCTAGGT 803
Query 764 TCCAGTGGGGCAC-GGCGGGTCTAGCCGTCGTGCTTAACGCGTCGTGGTGGTTCATTGTC 822
| || ||||| || | ||| |||| | ||||||||| ||||||||||| |||| ||
Sbjct 804 TACACTGGGG-ACTTCCTGGTTTAGCTTTAGTGCTTAACACGTCGTGGTGGGTCATCGTT 862
Query 823 GTCGCACAGCTCGTGTACATATTTAGTGGCACATGTGGTGAAGCTTGGTCTGGATTCT-C 881
|| ||||| || ||||| || |||| | | || ||||| || |||||||||||||| | |
Sbjct 863 GTTGCACAACTTGTGTATATCTTTAATTGTACGTGTGGAGAGGCTTGGTCTGGATT-TAC 921
Query 882 CTGGGAAGCCTTCCATAATTTGT-GGAGTTTCGTTAGATTATCTTTGGCTTCTGCTGTTA 940
||||| || || || ||||||| || |||| |||| ||| |||||||||||||||| |
Sbjct 922 GTGGGAGGCTTTTCACAATTTGTGGGGGTTT-GTTAAATTGTCTTTGGCTTCTGCTGCCA 980
Query 941 TGCTTTGTTTGGAGGTGTGGTATCTCATGGCAGTCATACTATTTGCTGGATATTTGAAGA 1000
|||| ||||||||| | |||||| | |||||| || || |||||||||||||||||||||
Sbjct 981 TGCTCTGTTTGGAGATTTGGTATTTTATGGCACTCGTATTATTTGCTGGATATTTGAAGA 1040
Query 1001 ATGCTGA-GATCTCCGTAGCCGCTCTCTCCATCTGCATGAACATTTTGGGATGGACTGCA 1059
||||||| | |||||||||| || |||||||| ||||||||||||||||||||| | ||
Sbjct 1041 ATGCTGAAG-TCTCCGTAGCTGCACTCTCCATATGCATGAACATTTTGGGATGGGCAGCT 1099
Query 1060 ATGATTGC-TATTGGGATGAACACAGCCGTAAGTGTGAGAGTGTCTAATGAACTAGGAGC 1118
||| |||| | |||||| ||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 1100 ATGGTTGCGT-TTGGGACAAACGCAGCAGTAAGTGTGAGAGTGTCAAATGAGCTAGGAGC 1158
Query 1119 AAAGC-ATCCAAGAACCGCGAAATTTTCTCTACTAGTGGCAGTGATAACATCGACA-CTG 1176
| || | |||||||| || || ||||||||| | ||||| |||||| |||||| |
Sbjct 1159 TA-GCCACCCAAGAACGGCCAAGTTTTCTCTAGTTGTGGCTGTGATATTGTCGACAGCAA 1217
Query 1177 CTCGGACTTGCT-ATATCAATTG-CTCTACTCATCTTTAG-AGATCAATATCCATCG-TT 1232
| ||| | | | ||| || | | |||||| |||| | | || | || || || ||
Sbjct 1218 TTGGGA-T-GTTTATAGCAGCCGGC-CTACTCTTCTTCCGCA-ATGAGTA-CC--CGGTT 1270
Query 1233 TT-TT-GTGGGAGACGAAGAAGTCATCATTGTTGTTAAAGATCTTACACCAATTCTTACA 1290
|| || |||| ||| |||||||| | | ||| |||| ||| || || ||||| ||| |
Sbjct 1271 TTGTTTGTGGAAGATGAAGAAGTTAGAAATGTGGTTAGAGAACTCACGCCAATGCTTGC- 1329
Query 1291 CTCTC-CATTGTCATCAACAATGTCCAACCTGTCTTATCAGGGGTGGCTGTGGGAGCTGG 1349
|| | |||||||||||||||||| |||||||| || || || |||||||||||||| ||
Sbjct 1330 CTTTTGCATTGTCATCAACAATGTTCAACCTGTATTGTCTGGAGTGGCTGTGGGAGCGGG 1389
Query 1350 ATGGCAAGCAGCCGTGGCGTACGTTAACATAGTC-TGCTATTACTTGTTTGGAATCCCAT 1408
||||||||||| || ||||| || ||||||| | ||||| |||||||| ||| ||||||
Sbjct 1390 ATGGCAAGCAGTTGTAGCGTATGTGAACATAG-CATGCTACTACTTGTTCGGAGTCCCAT 1448
Query 1409 TTGGTCTATTATTAGGATACAAGCTT-AACTTTGGCGTAATGGGAATTTGGTGCGGAATG 1467
||||||||||||| |||| |||||| || | ||| ||||||||||||||||| || |||
Sbjct 1449 TTGGTCTATTATTGGGATTTAAGCTTGAA-TATGGAGTAATGGGAATTTGGTGGGGGATG 1507
Query 1468 TTGACGGGAACCGTGGTACAGA-CAATAGTCTTAACATTG-ATGATCTGCAGAACAAATT 1525
|||||||||| | || || | | |||||| | || ||| |||||||||| ||| ||||
Sbjct 1508 GTGACGGGAACTTTTGTTCA-ATCGATAGTCCTGAC-TTGGATGATCTGCAAAACCAATT 1565
Query 1526 GGGACACAGAGGCTGCAATGGCTGAGGGTAGGATAAGA-AAGTGGGGAGGAG 1576
|||| | ||||||| ||||||| |||| ||||||| | || ||||||||||
Sbjct 1566 GGGAGAAAGAGGCTTCAATGGCAGAGGAAAGGATAAAAGAA-TGGGGAGGAG 1616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85541728680
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5