BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg494176
Length=1138
Score E
Sequences producing significant alignments: (Bits) Value
AT5G38020.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1753 0.0
> AT5G38020.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr5:15165652-15167729
REVERSE LENGTH=1446
Length=1446
Score = 1753 bits (949), Expect = 0.0
Identities = 1079/1142 (94%), Gaps = 8/1142 (1%)
Strand=Plus/Plus
Query 1 AACATGGGGGTTCTTAGCATGAAAGGG-GGAGATGGAGAACACAGTTATGCCAATAACTC 59
|||||||| ||||| |||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 36 AACATGGGTGTTCTAAGCATG-AAGGGAGGAGATGGAGAACACAGTTATGCTAATAATTC 94
Query 60 CGAGGGGCAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTGAAAGA 119
|||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 95 CGAGGGACAGAAACGTCTTGCTTCTGATGCAAAACCGGTGGTGGTAGAAACCGTAAAAGA 154
Query 120 AATGATAGTGAAAATGA-ATTTTCCTGGTTGTGTAAAAGTGGCTGACTTAGGATGTTCTT 178
|||||||||||||| | |||||||||||||| |||||||||| ||||||||||||||||
Sbjct 155 AATGATAGTGAAAA-CAGATTTTCCTGGTTGTATAAAAGTGGCCGACTTAGGATGTTCTT 213
Query 179 CCGGGGAAAACACGTTATTGGTCATGTCCGAAATCGTCGACACGATCATAACATCATACC 238
|||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||
Sbjct 214 CCGGGGAAAACACGTTATTGGTCATGTCCGAAATAGTCAACACGATCATTACATCATACC 273
Query 239 AACAAAAAGGCAAAAACTTACCAGAGATCAATTGTTGTCTGAACGATCTCCCAGACAACG 298
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 274 AACAAAAAGGCAAAAACTTACCAGAGATCAATTGTTGTTTGAACGATCTCCCAGACAACG 333
Query 299 ATTTCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 334 ATTTCAACACTACTTTCAAGTTGGTCCCTGCCTTCCACAAGTTGCTGAAGATGGATGTTA 393
Query 359 AAGGAAAATGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTATTCCCAAGCA 418
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 394 AAGGGAAATGCTTCATCTCAGGAGTCCCAGGCTCATTCTACTCAAGACTTTTCCCTAGCA 453
Query 419 AGTCTCTTCAtttttttCATTCATCTCTTTGTCTCCACTGGCTTTCCAAAGTTCCTAA-G 477
||||||| |||||| ||||||||||||||||||| || |||||||||||||||||| | |
Sbjct 454 AGTCTCTCCATTTTGTTCATTCATCTCTTTGTCTACATTGGCTTTCCAAAGTTCCTGATG 513
Query 478 GGTCTTGAAGATAACAAGAAGAACGTGTACCTTAGAAGTCCATGCCTTCCAAATGTGTAC 537
|| |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 514 GG-CTTGAAGATAACAAGAAGAATGTGTACCTTAGAAGTCCATGCCCTCCAAATGTGTAC 572
Query 538 AAGAGTTATTTGAGTCAGTTCAAGCATGACTTT-TCGTTATTTCTAAGAATGCGTGCGGA 596
||||||||||||| |||||||||| |||| ||| || || ||||| ||| ||||||||||
Sbjct 573 AAGAGTTATTTGACTCAGTTCAAGAATGA-TTTCTCTTTGTTTCTGAGACTGCGTGCGGA 631
Query 597 TGAGACTGTGTCAAATGGACGTATGGCTCTTACTTTTGTGGGCAGAAAAGCTTTGGACCC 656
|||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||| ||
Sbjct 632 TGAGACTGTGCCAAATGGACGTATGGCTCTTACTTTCGTGGGCAGAAAATCTTTGGATCC 691
Query 657 TTTATCTCAAGATTGTTTCCAAAATTGGTCGTCGATATCTGATTCCCTCCTCGACTTGGT 716
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 692 TTTATCTAAAGATTGTTTCCAAAATTGGTCGTCGATATCTGATTCCCTCCTCGACTTGGT 751
Query 717 TTCTGAGGGTATTGTGAAGGAATCAGATGTAGCTTCTTTTAACTTGCCATTCTACAATCC 776
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 752 TTCTGAGGGTATTGTGAAGGAATCGGATGTAGATTCTTTTAACTTGCCATTCTACAATCC 811
Query 777 TGACGAAAGTGAGGTGAGGGAAGTAATCGAAAGCGAGGGCTCTTTCGAAATCAATAATTT 836
|||||| ||||||||||||||||| ||||||||||||||||| ||| |||||| |||||
Sbjct 812 TGACGAGAGTGAGGTGAGGGAAGTTATCGAAAGCGAGGGCTCGTTCAAAATCAGCAATTT 871
Query 837 CGAGACAATCTTTGGTCTTCTCTTTTCATACAAAACTGGTCGTACCGAAGTGAAAGATGA 896
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 872 TGAGACAATCTTTGGTCTTCTCTTTTCATACAAAACTGGTCGTACTGAAGTGAAAGATGA 931
Query 897 TGATAATAATTTGGACCAATCATGCCAATTTGAAGTCATTAGAAAGAGGACAAGCATCAT 956
|||| ||||||||||||||||||| | ||||||||||||| |||||||| ||||||||||
Sbjct 932 TGATGATAATTTGGACCAATCATGTCGATTTGAAGTCATTCGAAAGAGGGCAAGCATCAT 991
Query 957 AAGATCCATTACTGAACCAATGCTTGCTGCTCATTTTGGAGACGCCATTATGGATCGTCT 1016
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 992 AAGATCCATTACTGAACCAATGCTTGGTGCTCATTTTGGAGACGCCATTATGGATCGTCT 1051
Query 1017 GTTTGAGAGGTATACATACCATCTTTCCCAGCGTTACGATACTTTGCGCAACAAACCAAC 1076
||| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1052 GTTCGAGAGGTATACATACCATCTTGCCGAGCGTTACGATACTTTGCGCAACAAACCAAC 1111
Query 1077 TGTTCAGTTCTTCGTTTCCTTGACAAGGAAGTAACAAACCTATAAGGAGATAGTAAGTGA 1136
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1112 TGTTCAGTTCTTCGTTTCCTTGACAAGGAAGTAACAAACCTATGAGGAGACAGTAAGTGA 1171
Query 1137 AG 1138
||
Sbjct 1172 AG 1173
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55823006040
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5